TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 193 | 1.2e-52 | TIR domain |
| TIR_2 | PF13676 | 24 - 116 | 7.9e-15 | TIR domain |
| NB-ARC | PF00931 | 205 - 372 | 1.2e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 441 - 513 | 5e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 700 - 781 | 3e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 703 - 787 | 3.2e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 995, 1715 |
| AccB1I | GGYRCC | 1 cut(s) | 2346 |
| AccII | CGCG | 1 cut(s) | 102 |
| AciI | CCGC | 5 cut(s) | 504, 1653, 1768, 1793, 2203 |
| AclWI | GGATC | 9 cut(s) | 155, 229, 347, 360, 936, 1080, 1989, 2061, 2100 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 4 cut(s) | 1338, 1707, 1912, 1928 |
| AcuI | CTGAAG | 2 cut(s) | 1197, 2345 |
| AfaI | GTAC | 2 cut(s) | 615, 1996 |
| AfeI | AGCGCT | 1 cut(s) | 1194 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 57, 270, 500, 1069, 1280, 1871, 2024, 2374 |
| AgeI | ACCGGT | 1 cut(s) | 50 |
| AhlI | ACTAGT | 1 cut(s) | 286 |
| AjnI | CCWGG | 4 cut(s) | 1783, 1977, 2086, 2342 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 402, 434 |
| AluBI | AGCT | 9 cut(s) | 229, 461, 638, 710, 956, 1085, 1093, 1247, 2041 |
| AluI | AGCT | 9 cut(s) | 229, 461, 638, 710, 956, 1085, 1093, 1247, 2041 |
| Alw21I | GWGCWC | 1 cut(s) | 1095 |
| Alw26I | GTCTC | 5 cut(s) | 55, 594, 1060, 1613, 1874 |
| AlwI | GGATC | 9 cut(s) | 155, 229, 347, 360, 936, 1080, 1989, 2061, 2100 |
| Ama87I | CYCGRG | 1 cut(s) | 499 |
| Aor51HI | AGCGCT | 1 cut(s) | 1194 |
| AoxI | GGCC | 6 cut(s) | 3, 491, 1059, 1180, 1455, 1781 |
| ApeKI | GCWGC | 3 cut(s) | 473, 1560, 1795 |
| ApoI | RAATTY | 4 cut(s) | 1338, 1707, 1912, 1928 |
| AseI | ATTAAT | 3 cut(s) | 557, 2121, 2247 |
| AsiGI | ACCGGT | 1 cut(s) | 50 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 288, 1182 |
| AspLEI | GCGC | 2 cut(s) | 1195, 1560 |
| AspS9I | GGNCC | 5 cut(s) | 937, 962, 1060, 1456, 1759 |
| AsuC2I | CCSGG | 1 cut(s) | 1063 |
| AsuHPI | GGTGA | 3 cut(s) | 401, 2006, 2410 |
| AsuII | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| AvaI | CYCGRG | 1 cut(s) | 499 |
| AvaII | GGWCC | 3 cut(s) | 937, 962, 1759 |
| BamHI | GGATCC | 1 cut(s) | 352 |
| BanI | GGYRCC | 1 cut(s) | 2346 |
| BanII | GRGCYC | 1 cut(s) | 1095 |
| BauI | CACGAG | 2 cut(s) | 609, 1086 |
| BbsI | GAAGAC | 2 cut(s) | 698, 806 |
| Bbv12I | GWGCWC | 1 cut(s) | 1095 |
| BbvI | GCAGC | 3 cut(s) | 485, 1572, 1782 |
| BccI | CCATC | 3 cut(s) | 364, 444, 1250 |
| BciT130I | CCWGG | 4 cut(s) | 1785, 1979, 2088, 2344 |
| BciVI | GTATCC | 4 cut(s) | 88, 305, 1764, 2021 |
| BclI | TGATCA | 1 cut(s) | 859 |
| BcnI | CCSGG | 1 cut(s) | 1063 |
| BcoDI | GTCTC | 5 cut(s) | 55, 594, 1060, 1613, 1874 |
| BcuI | ACTAGT | 1 cut(s) | 286 |
| BfaI | CTAG | 3 cut(s) | 287, 794, 1502 |
| BfoI | RGCGCY | 1 cut(s) | 1196 |
| BfuI | GTATCC | 4 cut(s) | 88, 305, 1764, 2021 |
| BglII | AGATCT | 4 cut(s) | 17, 311, 1126, 2290 |
| BisI | GCNGC | 3 cut(s) | 474, 1561, 1796 |
| BlsI | GCNGC | 3 cut(s) | 475, 1562, 1797 |
| Bme1390I | CCNGG | 5 cut(s) | 1063, 1785, 1979, 2088, 2344 |
| Bme18I | GGWCC | 3 cut(s) | 937, 962, 1759 |
| BmeT110I | CYCGRG | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 5 cut(s) | 937, 962, 1060, 1456, 1759 |
| BmiI | GGNNCC | 3 cut(s) | 354, 963, 2348 |
| BmrFI | CCNGG | 5 cut(s) | 1063, 1785, 1979, 2088, 2344 |
| BmsI | GCATC | 5 cut(s) | 269, 1582, 2070, 2220, 2313 |
| BpiI | GAAGAC | 2 cut(s) | 698, 806 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 3 cut(s) | 699, 2109, 2122 |
| Bpu14I | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| BpuEI | CTTGAG | 2 cut(s) | 1690, 2096 |
| BpuMI | CCSGG | 1 cut(s) | 1063 |
| BsaBI | GATNNNNATC | 2 cut(s) | 168, 927 |
| BsaI | GGTCTC | 1 cut(s) | 1613 |
| BsaJI | CCNNGG | 1 cut(s) | 2190 |
| BsaWI | WCCGGW | 2 cut(s) | 50, 1756 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 57, 270, 500, 1069, 1280, 1871, 2024, 2374 |
| Bse118I | RCCGGY | 1 cut(s) | 50 |
| Bse1I | ACTGG | 8 cut(s) | 682, 940, 1074, 1323, 1762, 2055, 2105, 2212 |
| Bse3DI | GCAATG | 2 cut(s) | 1350, 2219 |
| Bse8I | GATNNNNATC | 2 cut(s) | 168, 927 |
| BseBI | CCWGG | 4 cut(s) | 1785, 1979, 2088, 2344 |
| BseDI | CCNNGG | 1 cut(s) | 2190 |
| BseGI | GGATG | 3 cut(s) | 260, 2186, 2228 |
| BseJI | GATNNNNATC | 2 cut(s) | 168, 927 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 57, 270, 500, 1069, 1280, 1871, 2024, 2374 |
| BseMI | GCAATG | 2 cut(s) | 1350, 2219 |
| BseMII | CTCAG | 1 cut(s) | 68 |
| BseNI | ACTGG | 8 cut(s) | 682, 940, 1074, 1323, 1762, 2055, 2105, 2212 |
| BseRI | GAGGAG | 2 cut(s) | 25, 195 |
| BseXI | GCAGC | 3 cut(s) | 485, 1572, 1782 |
| BseYI | CCCAGC | 1 cut(s) | 956 |
| Bsh1236I | CGCG | 1 cut(s) | 102 |
| BshFI | GGCC | 6 cut(s) | 5, 493, 1061, 1182, 1457, 1783 |
| BshNI | GGYRCC | 1 cut(s) | 2346 |
| BshTI | ACCGGT | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1095 |
| BsiHKCI | CYCGRG | 1 cut(s) | 499 |
| BsiSI | CCGG | 3 cut(s) | 51, 1063, 1757 |
| BslFI | GGGAC | 1 cut(s) | 975 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 57, 270, 500, 1069, 1280, 1871, 2024, 2374 |
| BsmAI | GTCTC | 5 cut(s) | 55, 594, 1060, 1613, 1874 |
| BsmFI | GGGAC | 1 cut(s) | 975 |
| BsmI | GAATGC | 4 cut(s) | 859, 1284, 2069, 2423 |
| BsnI | GGCC | 6 cut(s) | 5, 493, 1061, 1182, 1457, 1783 |
| Bso31I | GGTCTC | 1 cut(s) | 1613 |
| BsoBI | CYCGRG | 1 cut(s) | 499 |
| Bsp119I | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1095 |
| Bsp1407I | TGTACA | 2 cut(s) | 613, 1994 |
| BspACI | CCGC | 5 cut(s) | 504, 1653, 1768, 1793, 2203 |
| BspANI | GGCC | 6 cut(s) | 5, 493, 1061, 1182, 1457, 1783 |
| BspCNI | CTCAG | 1 cut(s) | 69 |
| BspFNI | CGCG | 1 cut(s) | 102 |
| BspHI | TCATGA | 2 cut(s) | 1075, 1528 |
| BspLI | GGNNCC | 3 cut(s) | 354, 963, 2348 |
| BspPI | GGATC | 9 cut(s) | 155, 229, 347, 360, 936, 1080, 1989, 2061, 2100 |
| BspQI | GCTCTTC | 1 cut(s) | 1100 |
| BspT104I | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| BspT107I | GGYRCC | 1 cut(s) | 2346 |
| BspTNI | GGTCTC | 1 cut(s) | 1613 |
| BsrDI | GCAATG | 2 cut(s) | 1350, 2219 |
| BsrFI | RCCGGY | 1 cut(s) | 50 |
| BsrGI | TGTACA | 2 cut(s) | 613, 1994 |
| BsrI | ACTGG | 8 cut(s) | 682, 940, 1074, 1323, 1762, 2055, 2105, 2212 |
| BssAI | RCCGGY | 1 cut(s) | 50 |
| BssECI | CCNNGG | 1 cut(s) | 2190 |
| BssSI | CACGAG | 2 cut(s) | 609, 1086 |
| BssT1I | CCWWGG | 1 cut(s) | 2190 |
| Bst2BI | CACGAG | 2 cut(s) | 609, 1086 |
| Bst2UI | CCWGG | 4 cut(s) | 1785, 1979, 2088, 2344 |
| Bst4CI | ACNGT | 6 cut(s) | 812, 980, 1162, 1580, 1731, 2432 |
| Bst6I | CTCTTC | 5 cut(s) | 534, 1100, 1281, 1527, 2250 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1498, 1804 |
| BstAUI | TGTACA | 2 cut(s) | 613, 1994 |
| BstBI | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| BstC8I | GCNNGC | 2 cut(s) | 1245, 1357 |
| BstDEI | CTNAG | 7 cut(s) | 77, 315, 634, 1252, 1933, 1969, 1985 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1278 |
| BstF5I | GGATG | 3 cut(s) | 260, 2186, 2228 |
| BstFNI | CGCG | 1 cut(s) | 102 |
| BstH2I | RGCGCY | 1 cut(s) | 1196 |
| BstHHI | GCGC | 2 cut(s) | 1195, 1560 |
| BstMAI | GTCTC | 5 cut(s) | 55, 594, 1060, 1613, 1874 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1498, 1804 |
| BstNI | CCWGG | 4 cut(s) | 1785, 1979, 2088, 2344 |
| BstNSI | RCATGY | 3 cut(s) | 1359, 1478, 1648 |
| BstSCI | CCNGG | 5 cut(s) | 1061, 1783, 1977, 2086, 2342 |
| BstUI | CGCG | 1 cut(s) | 102 |
| BstV1I | GCAGC | 3 cut(s) | 485, 1572, 1782 |
| BstV2I | GAAGAC | 2 cut(s) | 698, 806 |
| BstX2I | RGATCY | 8 cut(s) | 17, 311, 352, 1126, 1981, 2053, 2105, 2290 |
| BstYI | RGATCY | 8 cut(s) | 17, 311, 352, 1126, 1981, 2053, 2105, 2290 |
| BsuI | GTATCC | 4 cut(s) | 88, 305, 1764, 2021 |
| BsuRI | GGCC | 6 cut(s) | 5, 493, 1061, 1182, 1457, 1783 |
| BtsCI | GGATG | 3 cut(s) | 260, 2186, 2228 |
| BtsIMutI | CAGTG | 7 cut(s) | 783, 985, 1158, 1244, 1316, 1585, 2205 |
| Cac8I | GCNNGC | 2 cut(s) | 1245, 1357 |
| CciI | TCATGA | 2 cut(s) | 1075, 1528 |
| CfoI | GCGC | 2 cut(s) | 1195, 1560 |
| Cfr10I | RCCGGY | 1 cut(s) | 50 |
| Cfr13I | GGNCC | 5 cut(s) | 937, 962, 1060, 1456, 1759 |
| Csp6I | GTAC | 2 cut(s) | 614, 1995 |
| CspAI | ACCGGT | 1 cut(s) | 50 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2358, 2393 |
| CviQI | GTAC | 2 cut(s) | 614, 1995 |
| DdeI | CTNAG | 7 cut(s) | 77, 315, 634, 1252, 1933, 1969, 1985 |
| DraI | TTTAAA | 1 cut(s) | 2004 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 5 cut(s) | 534, 1100, 1281, 1527, 2250 |
| EarI | CTCTTC | 5 cut(s) | 534, 1100, 1281, 1527, 2250 |
| Ecl136II | GAGCTC | 1 cut(s) | 1093 |
| Eco130I | CCWWGG | 1 cut(s) | 2190 |
| Eco147I | AGGCCT | 1 cut(s) | 1182 |
| Eco24I | GRGCYC | 1 cut(s) | 1095 |
| Eco31I | GGTCTC | 1 cut(s) | 1613 |
| Eco47I | GGWCC | 3 cut(s) | 937, 962, 1759 |
| Eco47III | AGCGCT | 1 cut(s) | 1194 |
| Eco53kI | GAGCTC | 1 cut(s) | 1093 |
| Eco57I | CTGAAG | 2 cut(s) | 1197, 2345 |
| Eco88I | CYCGRG | 1 cut(s) | 499 |
| EcoICRI | GAGCTC | 1 cut(s) | 1093 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1278 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1456 |
| EcoRI | GAATTC | 1 cut(s) | 1928 |
| EcoRII | CCWGG | 4 cut(s) | 1783, 1977, 2086, 2342 |
| EcoT14I | CCWWGG | 1 cut(s) | 2190 |
| EcoT22I | ATGCAT | 2 cut(s) | 262, 1494 |
| EcoT38I | GRGCYC | 1 cut(s) | 1095 |
| ErhI | CCWWGG | 1 cut(s) | 2190 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 609, 641 |
| FaqI | GGGAC | 1 cut(s) | 975 |
| FauI | CCCGC | 2 cut(s) | 497, 2210 |
| FbaI | TGATCA | 1 cut(s) | 859 |
| Fnu4HI | GCNGC | 3 cut(s) | 474, 1561, 1796 |
| FokI | GGATG | 3 cut(s) | 247, 2173, 2215 |
| FriOI | GRGCYC | 1 cut(s) | 1095 |
| Fsp4HI | GCNGC | 3 cut(s) | 474, 1561, 1796 |
| FspBI | CTAG | 3 cut(s) | 287, 794, 1502 |
| GlaI | GCGC | 2 cut(s) | 1194, 1559 |
| GluI | GCNGC | 3 cut(s) | 474, 1561, 1796 |
| GsaI | CCCAGC | 1 cut(s) | 960 |
| GsuI | CTGGAG | 3 cut(s) | 699, 2109, 2122 |
| HaeII | RGCGCY | 1 cut(s) | 1196 |
| HaeIII | GGCC | 6 cut(s) | 5, 493, 1061, 1182, 1457, 1783 |
| HapII | CCGG | 3 cut(s) | 51, 1063, 1757 |
| HhaI | GCGC | 2 cut(s) | 1195, 1560 |
| Hin6I | GCGC | 2 cut(s) | 1193, 1558 |
| HinP1I | GCGC | 2 cut(s) | 1193, 1558 |
| HincII | GTYRAC | 3 cut(s) | 799, 1156, 2098 |
| HindII | GTYRAC | 3 cut(s) | 799, 1156, 2098 |
| HindIII | AAGCTT | 2 cut(s) | 1245, 2039 |
| HpaI | GTTAAC | 1 cut(s) | 1156 |
| HpaII | CCGG | 3 cut(s) | 51, 1063, 1757 |
| HphI | GGTGA | 3 cut(s) | 401, 2006, 2410 |
| Hpy166II | GTNNAC | 9 cut(s) | 614, 715, 799, 1156, 1211, 1642, 2098, 2267, 2380 |
| Hpy8I | GTNNAC | 9 cut(s) | 614, 715, 799, 1156, 1211, 1642, 2098, 2267, 2380 |
| HpyCH4III | ACNGT | 6 cut(s) | 812, 980, 1162, 1580, 1731, 2432 |
| HpyCH4IV | ACGT | 3 cut(s) | 363, 412, 1719 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1498, 1804 |
| HpyF3I | CTNAG | 7 cut(s) | 77, 315, 634, 1252, 1933, 1969, 1985 |
| HpySE526I | ACGT | 3 cut(s) | 363, 412, 1719 |
| HspAI | GCGC | 2 cut(s) | 1193, 1558 |
| Ksp22I | TGATCA | 1 cut(s) | 859 |
| KspAI | GTTAAC | 1 cut(s) | 1156 |
| LguI | GCTCTTC | 1 cut(s) | 1100 |
| Lsp1109I | GCAGC | 3 cut(s) | 485, 1572, 1782 |
| LweI | GCATC | 5 cut(s) | 269, 1582, 2070, 2220, 2313 |
| MaeI | CTAG | 3 cut(s) | 287, 794, 1502 |
| MaeII | ACGT | 3 cut(s) | 363, 412, 1719 |
| MaeIII | GTNAC | 5 cut(s) | 847, 1307, 1412, 2359, 2432 |
| MfeI | CAATTG | 3 cut(s) | 11, 699, 932 |
| MflI | RGATCY | 8 cut(s) | 17, 311, 352, 1126, 1981, 2053, 2105, 2290 |
| MhlI | GDGCHC | 1 cut(s) | 1095 |
| MlyI | GAGTC | 4 cut(s) | 1544, 1681, 2375, 2429 |
| MmeI | TCCRAC | 4 cut(s) | 622, 2005, 2124, 2137 |
| Mph1103I | ATGCAT | 2 cut(s) | 262, 1494 |
| MroXI | GAANNNNTTC | 2 cut(s) | 288, 1182 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1578, 1581, 2274 |
| MspA1I | CMGCKG | 1 cut(s) | 1795 |
| MspI | CCGG | 3 cut(s) | 51, 1063, 1757 |
| MspR9I | CCNGG | 5 cut(s) | 1063, 1785, 1979, 2088, 2344 |
| MunI | CAATTG | 3 cut(s) | 11, 699, 932 |
| Mva1269I | GAATGC | 4 cut(s) | 859, 1284, 2069, 2423 |
| MvaI | CCWGG | 4 cut(s) | 1785, 1979, 2088, 2344 |
| MvnI | CGCG | 1 cut(s) | 102 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1498, 1804 |
| NciI | CCSGG | 1 cut(s) | 1063 |
| NlaIV | GGNNCC | 3 cut(s) | 354, 963, 2348 |
| NmuCI | GTSAC | 1 cut(s) | 2432 |
| NsiI | ATGCAT | 2 cut(s) | 262, 1494 |
| NspI | RCATGY | 3 cut(s) | 1359, 1478, 1648 |
| NspV | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| PaeI | GCATGC | 1 cut(s) | 1359 |
| PagI | TCATGA | 2 cut(s) | 1075, 1528 |
| PceI | AGGCCT | 1 cut(s) | 1182 |
| PciSI | GCTCTTC | 1 cut(s) | 1100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1672 |
| PctI | GAATGC | 4 cut(s) | 859, 1284, 2069, 2423 |
| PdmI | GAANNNNTTC | 2 cut(s) | 288, 1182 |
| PfeI | GAWTC | 9 cut(s) | 417, 512, 531, 605, 904, 1313, 1828, 1881, 2011 |
| PfoI | TCCNGGA | 1 cut(s) | 1977 |
| PinAI | ACCGGT | 1 cut(s) | 50 |
| PkrI | GCNGC | 3 cut(s) | 475, 1562, 1797 |
| PleI | GAGTC | 4 cut(s) | 1543, 1680, 2375, 2429 |
| PpsI | GAGTC | 4 cut(s) | 1543, 1680, 2375, 2429 |
| PshBI | ATTAAT | 3 cut(s) | 557, 2121, 2247 |
| PsiI | TTATAA | 2 cut(s) | 995, 1715 |
| Psp124BI | GAGCTC | 1 cut(s) | 1095 |
| Psp6I | CCWGG | 4 cut(s) | 1783, 1977, 2086, 2342 |
| PspFI | CCCAGC | 1 cut(s) | 956 |
| PspGI | CCWGG | 4 cut(s) | 1783, 1977, 2086, 2342 |
| PspN4I | GGNNCC | 3 cut(s) | 354, 963, 2348 |
| PspPI | GGNCC | 5 cut(s) | 937, 962, 1060, 1456, 1759 |
| PsuI | RGATCY | 8 cut(s) | 17, 311, 352, 1126, 1981, 2053, 2105, 2290 |
| RsaI | GTAC | 2 cut(s) | 615, 1996 |
| RsaNI | GTAC | 2 cut(s) | 614, 1995 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1578, 1581, 2274 |
| SacI | GAGCTC | 1 cut(s) | 1095 |
| SapI | GCTCTTC | 1 cut(s) | 1100 |
| SatI | GCNGC | 3 cut(s) | 474, 1561, 1796 |
| Sau96I | GGNCC | 5 cut(s) | 937, 962, 1060, 1456, 1759 |
| SchI | GAGTC | 4 cut(s) | 1544, 1681, 2375, 2429 |
| ScrFI | CCNGG | 5 cut(s) | 1063, 1785, 1979, 2088, 2344 |
| SduI | GDGCHC | 1 cut(s) | 1095 |
| SfaNI | GCATC | 5 cut(s) | 269, 1582, 2070, 2220, 2313 |
| SfuI | TTCGAA | 3 cut(s) | 139, 738, 1894 |
| SinI | GGWCC | 3 cut(s) | 937, 962, 1759 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1578, 1581, 2274 |
| SmlI | CTYRAG | 2 cut(s) | 1669, 2075 |
| SmoI | CTYRAG | 2 cut(s) | 1669, 2075 |
| SpeI | ACTAGT | 1 cut(s) | 286 |
| SphI | GCATGC | 1 cut(s) | 1359 |
| SseBI | AGGCCT | 1 cut(s) | 1182 |
| SsiI | CCGC | 5 cut(s) | 504, 1653, 1768, 1793, 2203 |
| SspI | AATATT | 1 cut(s) | 1398 |
| SspMI | CTAG | 3 cut(s) | 287, 794, 1502 |
| SstI | GAGCTC | 1 cut(s) | 1095 |
| StuI | AGGCCT | 1 cut(s) | 1182 |
| StyD4I | CCNGG | 5 cut(s) | 1061, 1783, 1977, 2086, 2342 |
| StyI | CCWWGG | 1 cut(s) | 2190 |
| TaaI | ACNGT | 6 cut(s) | 812, 980, 1162, 1580, 1731, 2432 |
| TaiI | ACGT | 3 cut(s) | 366, 415, 1722 |
| TaqI | TCGA | 4 cut(s) | 139, 738, 1894, 2034 |
| TatI | WGTACW | 2 cut(s) | 613, 1994 |
| TfiI | GAWTC | 9 cut(s) | 417, 512, 531, 605, 904, 1313, 1828, 1881, 2011 |
| TscAI | CASTG | 7 cut(s) | 783, 985, 1165, 1244, 1323, 1585, 2212 |
| TseFI | GTSAC | 1 cut(s) | 2432 |
| TseI | GCWGC | 3 cut(s) | 473, 1560, 1795 |
| Tsp45I | GTSAC | 1 cut(s) | 2432 |
| TspRI | CASTG | 7 cut(s) | 783, 985, 1165, 1244, 1323, 1585, 2212 |
| VpaK11BI | GGWCC | 3 cut(s) | 937, 962, 1759 |
| VspI | ATTAAT | 3 cut(s) | 557, 2121, 2247 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1278 |
| XapI | RAATTY | 4 cut(s) | 1338, 1707, 1912, 1928 |
| XceI | RCATGY | 3 cut(s) | 1359, 1478, 1648 |
| XmnI | GAANNNNTTC | 2 cut(s) | 288, 1182 |
| XspI | CTAG | 3 cut(s) | 287, 794, 1502 |
| Zsp2I | ATGCAT | 2 cut(s) | 262, 1494 |