TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 3 - 50 | 5.4e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_RPS2 | PF23247 | 168 - 298 | 6.2e-07 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_13 | PF23286 | 329 - 422 | 1.6e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1599 |
| AarI | CACCTGC | 1 cut(s) | 160 |
| Acc36I | ACCTGC | 1 cut(s) | 160 |
| Acc65I | GGTACC | 1 cut(s) | 1962 |
| AccB1I | GGYRCC | 1 cut(s) | 1962 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AccII | CGCG | 1 cut(s) | 1164 |
| AciI | CCGC | 1 cut(s) | 1636 |
| AclWI | GGATC | 5 cut(s) | 268, 1095, 1478, 1929, 2063 |
| AcsI | RAATTY | 7 cut(s) | 577, 1185, 1522, 1537, 1790, 1821, 2104 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AfaI | GTAC | 8 cut(s) | 29, 201, 395, 984, 1339, 1431, 1964, 2070 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 121 |
| AflIII | ACRYGT | 2 cut(s) | 202, 1121 |
| AhlI | ACTAGT | 2 cut(s) | 1837, 2005 |
| AjnI | CCWGG | 3 cut(s) | 1435, 2019, 2093 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1529, 1561 |
| AluBI | AGCT | 4 cut(s) | 652, 762, 1000, 1195 |
| AluI | AGCT | 4 cut(s) | 652, 762, 1000, 1195 |
| Alw21I | GWGCWC | 1 cut(s) | 54 |
| Alw26I | GTCTC | 1 cut(s) | 2132 |
| AlwI | GGATC | 5 cut(s) | 268, 1095, 1478, 1929, 2063 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 891 |
| AoxI | GGCC | 2 cut(s) | 777, 1745 |
| ApeKI | GCWGC | 4 cut(s) | 799, 846, 1230, 1708 |
| ApoI | RAATTY | 7 cut(s) | 577, 1185, 1522, 1537, 1790, 1821, 2104 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1537, 1932 |
| Asp718I | GGTACC | 1 cut(s) | 1962 |
| AspLEI | GCGC | 1 cut(s) | 1983 |
| AspS9I | GGNCC | 2 cut(s) | 1273, 1745 |
| AsuC2I | CCSGG | 3 cut(s) | 162, 557, 1689 |
| AsuHPI | GGTGA | 4 cut(s) | 141, 176, 1941, 2048 |
| AvaII | GGWCC | 1 cut(s) | 1273 |
| BanI | GGYRCC | 1 cut(s) | 1962 |
| BanII | GRGCYC | 1 cut(s) | 1155 |
| BbsI | GAAGAC | 1 cut(s) | 978 |
| Bbv12I | GWGCWC | 1 cut(s) | 54 |
| BbvI | GCAGC | 4 cut(s) | 811, 858, 1217, 1695 |
| BccI | CCATC | 4 cut(s) | 427, 1357, 1571, 2162 |
| BciT130I | CCWGG | 3 cut(s) | 1437, 2021, 2095 |
| BciVI | GTATCC | 1 cut(s) | 2091 |
| BclI | TGATCA | 2 cut(s) | 1393, 1870 |
| BcnI | CCSGG | 3 cut(s) | 162, 557, 1689 |
| BcoDI | GTCTC | 1 cut(s) | 2132 |
| BcuI | ACTAGT | 2 cut(s) | 1837, 2005 |
| BfaI | CTAG | 5 cut(s) | 465, 812, 1631, 1838, 2006 |
| BfmI | CTRYAG | 4 cut(s) | 153, 679, 869, 1709 |
| BfuAI | ACCTGC | 1 cut(s) | 160 |
| BfuI | GTATCC | 1 cut(s) | 2091 |
| BglII | AGATCT | 1 cut(s) | 1885 |
| BisI | GCNGC | 4 cut(s) | 800, 847, 1231, 1709 |
| BlsI | GCNGC | 4 cut(s) | 801, 848, 1232, 1710 |
| Bme1390I | CCNGG | 6 cut(s) | 162, 557, 1437, 1689, 2021, 2095 |
| Bme18I | GGWCC | 1 cut(s) | 1273 |
| BmgT120I | GGNCC | 2 cut(s) | 1273, 1745 |
| BmiI | GGNNCC | 5 cut(s) | 383, 784, 1746, 1964, 1990 |
| BmrFI | CCNGG | 6 cut(s) | 162, 557, 1437, 1689, 2021, 2095 |
| BmrI | ACTGGG | 2 cut(s) | 26, 1750 |
| BmsI | GCATC | 4 cut(s) | 858, 1376, 1483, 1647 |
| BmuI | ACTGGG | 2 cut(s) | 26, 1750 |
| BpiI | GAAGAC | 1 cut(s) | 978 |
| BpmI | CTGGAG | 1 cut(s) | 776 |
| Bpu10I | CCTNAGC | 1 cut(s) | 996 |
| BpuEI | CTTGAG | 2 cut(s) | 899, 1319 |
| BpuMI | CCSGG | 3 cut(s) | 162, 557, 1689 |
| BsaJI | CCNNGG | 6 cut(s) | 786, 1688, 1748, 1984, 1992, 2020 |
| BsaWI | WCCGGW | 2 cut(s) | 1421, 1848 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 121 |
| Bse1I | ACTGG | 3 cut(s) | 32, 726, 1745 |
| BseBI | CCWGG | 3 cut(s) | 1437, 2021, 2095 |
| BseDI | CCNNGG | 6 cut(s) | 786, 1688, 1748, 1984, 1992, 2020 |
| BseGI | GGATG | 6 cut(s) | 10, 199, 419, 929, 1357, 1474 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BseMII | CTCAG | 4 cut(s) | 579, 987, 1479, 2143 |
| BseNI | ACTGG | 3 cut(s) | 32, 726, 1745 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 4 cut(s) | 811, 858, 1217, 1695 |
| Bsh1236I | CGCG | 1 cut(s) | 1164 |
| BshFI | GGCC | 2 cut(s) | 779, 1747 |
| BshNI | GGYRCC | 1 cut(s) | 1962 |
| BsiHKAI | GWGCWC | 1 cut(s) | 54 |
| BsiSI | CCGG | 6 cut(s) | 161, 557, 780, 1422, 1688, 1849 |
| BslFI | GGGAC | 2 cut(s) | 49, 1034 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BsmAI | GTCTC | 1 cut(s) | 2132 |
| BsmFI | GGGAC | 2 cut(s) | 49, 1034 |
| BsmI | GAATGC | 1 cut(s) | 1325 |
| BsnI | GGCC | 2 cut(s) | 779, 1747 |
| Bsp1286I | GDGCHC | 2 cut(s) | 54, 1155 |
| Bsp1407I | TGTACA | 1 cut(s) | 199 |
| Bsp19I | CCATGG | 1 cut(s) | 786 |
| BspACI | CCGC | 1 cut(s) | 1636 |
| BspANI | GGCC | 2 cut(s) | 779, 1747 |
| BspCNI | CTCAG | 4 cut(s) | 578, 988, 1480, 2142 |
| BspFNI | CGCG | 1 cut(s) | 1164 |
| BspHI | TCATGA | 3 cut(s) | 625, 1666, 1924 |
| BspLI | GGNNCC | 5 cut(s) | 383, 784, 1746, 1964, 1990 |
| BspMAI | CTGCAG | 3 cut(s) | 157, 873, 1713 |
| BspMI | ACCTGC | 1 cut(s) | 160 |
| BspPI | GGATC | 5 cut(s) | 268, 1095, 1478, 1929, 2063 |
| BspQI | GCTCTTC | 1 cut(s) | 1755 |
| BspT107I | GGYRCC | 1 cut(s) | 1962 |
| BsrGI | TGTACA | 1 cut(s) | 199 |
| BsrI | ACTGG | 3 cut(s) | 32, 726, 1745 |
| BssECI | CCNNGG | 6 cut(s) | 786, 1688, 1748, 1984, 1992, 2020 |
| BssT1I | CCWWGG | 3 cut(s) | 786, 1984, 1992 |
| Bst2UI | CCWGG | 3 cut(s) | 1437, 2021, 2095 |
| Bst4CI | ACNGT | 2 cut(s) | 489, 1752 |
| Bst6I | CTCTTC | 1 cut(s) | 1755 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1220 |
| BstAUI | TGTACA | 1 cut(s) | 199 |
| BstC8I | GCNNGC | 1 cut(s) | 340 |
| BstDEI | CTNAG | 7 cut(s) | 11, 70, 565, 996, 1488, 1879, 2129 |
| BstDSI | CCRYGG | 2 cut(s) | 786, 1748 |
| BstF5I | GGATG | 6 cut(s) | 10, 199, 419, 929, 1357, 1474 |
| BstFNI | CGCG | 1 cut(s) | 1164 |
| BstHHI | GCGC | 1 cut(s) | 1983 |
| BstMAI | GTCTC | 1 cut(s) | 2132 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 100, 1220, 1556, 1744 |
| BstNI | CCWGG | 3 cut(s) | 1437, 2021, 2095 |
| BstNSI | RCATGY | 2 cut(s) | 206, 1125 |
| BstSCI | CCNGG | 6 cut(s) | 160, 555, 1435, 1687, 2019, 2093 |
| BstSFI | CTRYAG | 4 cut(s) | 153, 679, 869, 1709 |
| BstUI | CGCG | 1 cut(s) | 1164 |
| BstV1I | GCAGC | 4 cut(s) | 811, 858, 1217, 1695 |
| BstV2I | GAAGAC | 1 cut(s) | 978 |
| BstX2I | RGATCY | 4 cut(s) | 273, 1087, 1885, 2055 |
| BstYI | RGATCY | 4 cut(s) | 273, 1087, 1885, 2055 |
| BsuI | GTATCC | 1 cut(s) | 2091 |
| BsuRI | GGCC | 2 cut(s) | 779, 1747 |
| BtgI | CCRYGG | 2 cut(s) | 786, 1748 |
| BtsCI | GGATG | 6 cut(s) | 10, 199, 419, 929, 1357, 1474 |
| BtsI | GCAGTG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 4 cut(s) | 54, 719, 1534, 1738 |
| BveI | ACCTGC | 1 cut(s) | 160 |
| Cac8I | GCNNGC | 1 cut(s) | 340 |
| CaiI | CAGNNNCTG | 1 cut(s) | 891 |
| CciI | TCATGA | 3 cut(s) | 625, 1666, 1924 |
| CfoI | GCGC | 1 cut(s) | 1983 |
| Cfr13I | GGNCC | 2 cut(s) | 1273, 1745 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 8 cut(s) | 28, 200, 394, 983, 1338, 1430, 1963, 2069 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 688, 723, 1797, 1832 |
| CviQI | GTAC | 8 cut(s) | 28, 200, 394, 983, 1338, 1430, 1963, 2069 |
| DdeI | CTNAG | 7 cut(s) | 11, 70, 565, 996, 1488, 1879, 2129 |
| Eam1104I | CTCTTC | 1 cut(s) | 1755 |
| EarI | CTCTTC | 1 cut(s) | 1755 |
| Eco130I | CCWWGG | 3 cut(s) | 786, 1984, 1992 |
| Eco24I | GRGCYC | 1 cut(s) | 1155 |
| Eco47I | GGWCC | 1 cut(s) | 1273 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| EcoRI | GAATTC | 1 cut(s) | 1537 |
| EcoRII | CCWGG | 3 cut(s) | 1435, 2019, 2093 |
| EcoT14I | CCWWGG | 3 cut(s) | 786, 1984, 1992 |
| EcoT22I | ATGCAT | 1 cut(s) | 105 |
| EcoT38I | GRGCYC | 1 cut(s) | 1155 |
| ErhI | CCWWGG | 3 cut(s) | 786, 1984, 1992 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 53, 85, 1752, 1784, 1936, 1968 |
| FaqI | GGGAC | 2 cut(s) | 49, 1034 |
| FbaI | TGATCA | 2 cut(s) | 1393, 1870 |
| Fnu4HI | GCNGC | 4 cut(s) | 800, 847, 1231, 1709 |
| FokI | GGATG | 6 cut(s) | 17, 206, 406, 916, 1364, 1461 |
| FriOI | GRGCYC | 1 cut(s) | 1155 |
| Fsp4HI | GCNGC | 4 cut(s) | 800, 847, 1231, 1709 |
| FspBI | CTAG | 5 cut(s) | 465, 812, 1631, 1838, 2006 |
| GlaI | GCGC | 1 cut(s) | 1982 |
| GluI | GCNGC | 4 cut(s) | 800, 847, 1231, 1709 |
| GsuI | CTGGAG | 1 cut(s) | 776 |
| HaeIII | GGCC | 2 cut(s) | 779, 1747 |
| HapII | CCGG | 6 cut(s) | 161, 557, 780, 1422, 1688, 1849 |
| HgaI | GACGC | 1 cut(s) | 128 |
| HhaI | GCGC | 1 cut(s) | 1983 |
| Hin6I | GCGC | 1 cut(s) | 1981 |
| HinP1I | GCGC | 1 cut(s) | 1981 |
| HincII | GTYRAC | 2 cut(s) | 921, 1141 |
| HindII | GTYRAC | 2 cut(s) | 921, 1141 |
| HindIII | AAGCTT | 1 cut(s) | 650 |
| HinfI | GANTC | 8 cut(s) | 146, 310, 410, 622, 629, 1014, 1051, 1418 |
| HpaI | GTTAAC | 1 cut(s) | 1141 |
| HpaII | CCGG | 6 cut(s) | 161, 557, 780, 1422, 1688, 1849 |
| HphI | GGTGA | 4 cut(s) | 141, 176, 1941, 2048 |
| Hpy166II | GTNNAC | 4 cut(s) | 167, 921, 1071, 1141 |
| Hpy188I | TCNGA | 6 cut(s) | 485, 887, 1036, 1264, 1318, 1729 |
| Hpy8I | GTNNAC | 4 cut(s) | 167, 921, 1071, 1141 |
| HpyAV | CCTTC | 5 cut(s) | 395, 471, 1124, 1809, 2057 |
| HpyCH4III | ACNGT | 2 cut(s) | 489, 1752 |
| HpyCH4IV | ACGT | 1 cut(s) | 478 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 100, 1220, 1556, 1744 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 70, 565, 996, 1488, 1879, 2129 |
| HpySE526I | ACGT | 1 cut(s) | 478 |
| HspAI | GCGC | 1 cut(s) | 1981 |
| KpnI | GGTACC | 1 cut(s) | 1966 |
| Ksp22I | TGATCA | 2 cut(s) | 1393, 1870 |
| KspAI | GTTAAC | 1 cut(s) | 1141 |
| LguI | GCTCTTC | 1 cut(s) | 1755 |
| LmnI | GCTCC | 4 cut(s) | 387, 983, 1305, 1988 |
| Lsp1109I | GCAGC | 4 cut(s) | 811, 858, 1217, 1695 |
| LweI | GCATC | 4 cut(s) | 858, 1376, 1483, 1647 |
| MaeI | CTAG | 5 cut(s) | 465, 812, 1631, 1838, 2006 |
| MaeII | ACGT | 1 cut(s) | 478 |
| MaeIII | GTNAC | 2 cut(s) | 20, 1999 |
| MboII | GAAGA | 6 cut(s) | 227, 983, 1772, 1880, 2039, 2050 |
| MflI | RGATCY | 4 cut(s) | 273, 1087, 1885, 2055 |
| MhlI | GDGCHC | 2 cut(s) | 54, 1155 |
| MlyI | GAGTC | 2 cut(s) | 1023, 1427 |
| MmeI | TCCRAC | 6 cut(s) | 328, 616, 1142, 1226, 1502, 1858 |
| Mph1103I | ATGCAT | 1 cut(s) | 105 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1537, 1932 |
| MslI | CAYNNNNRTG | 3 cut(s) | 192, 282, 1851 |
| MspI | CCGG | 6 cut(s) | 161, 557, 780, 1422, 1688, 1849 |
| MspR9I | CCNGG | 6 cut(s) | 162, 557, 1437, 1689, 2021, 2095 |
| Mva1269I | GAATGC | 1 cut(s) | 1325 |
| MvaI | CCWGG | 3 cut(s) | 1437, 2021, 2095 |
| MvnI | CGCG | 1 cut(s) | 1164 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 100, 1220, 1556, 1744 |
| NciI | CCSGG | 3 cut(s) | 162, 557, 1689 |
| NcoI | CCATGG | 1 cut(s) | 786 |
| NlaIV | GGNNCC | 5 cut(s) | 383, 784, 1746, 1964, 1990 |
| NmuCI | GTSAC | 1 cut(s) | 20 |
| NsiI | ATGCAT | 1 cut(s) | 105 |
| NspI | RCATGY | 2 cut(s) | 206, 1125 |
| PagI | TCATGA | 3 cut(s) | 625, 1666, 1924 |
| PaqCI | CACCTGC | 1 cut(s) | 160 |
| PciI | ACATGT | 2 cut(s) | 202, 1121 |
| PciSI | GCTCTTC | 1 cut(s) | 1755 |
| PctI | GAATGC | 1 cut(s) | 1325 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1537, 1932 |
| PfeI | GAWTC | 6 cut(s) | 146, 310, 410, 622, 629, 1051 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PfoI | TCCNGGA | 2 cut(s) | 555, 1435 |
| PkrI | GCNGC | 4 cut(s) | 801, 848, 1232, 1710 |
| PleI | GAGTC | 2 cut(s) | 1022, 1426 |
| PpsI | GAGTC | 2 cut(s) | 1022, 1426 |
| PscI | ACATGT | 2 cut(s) | 202, 1121 |
| PsiI | TTATAA | 1 cut(s) | 1599 |
| Psp6I | CCWGG | 3 cut(s) | 1435, 2019, 2093 |
| PspGI | CCWGG | 3 cut(s) | 1435, 2019, 2093 |
| PspN4I | GGNNCC | 5 cut(s) | 383, 784, 1746, 1964, 1990 |
| PspPI | GGNCC | 2 cut(s) | 1273, 1745 |
| PstI | CTGCAG | 3 cut(s) | 157, 873, 1713 |
| PstNI | CAGNNNCTG | 1 cut(s) | 891 |
| PsuI | RGATCY | 4 cut(s) | 273, 1087, 1885, 2055 |
| RsaI | GTAC | 8 cut(s) | 29, 201, 395, 984, 1339, 1431, 1964, 2070 |
| RsaNI | GTAC | 8 cut(s) | 28, 200, 394, 983, 1338, 1430, 1963, 2069 |
| RseI | CAYNNNNRTG | 3 cut(s) | 192, 282, 1851 |
| SapI | GCTCTTC | 1 cut(s) | 1755 |
| SatI | GCNGC | 4 cut(s) | 800, 847, 1231, 1709 |
| Sau96I | GGNCC | 2 cut(s) | 1273, 1745 |
| SchI | GAGTC | 2 cut(s) | 1023, 1427 |
| ScrFI | CCNGG | 6 cut(s) | 162, 557, 1437, 1689, 2021, 2095 |
| SduI | GDGCHC | 2 cut(s) | 54, 1155 |
| SfaNI | GCATC | 4 cut(s) | 858, 1376, 1483, 1647 |
| SfcI | CTRYAG | 4 cut(s) | 153, 679, 869, 1709 |
| SinI | GGWCC | 1 cut(s) | 1273 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 192, 282, 1851 |
| SmlI | CTYRAG | 2 cut(s) | 878, 1298 |
| SmoI | CTYRAG | 2 cut(s) | 878, 1298 |
| SpeI | ACTAGT | 2 cut(s) | 1837, 2005 |
| SsiI | CCGC | 1 cut(s) | 1636 |
| SspMI | CTAG | 5 cut(s) | 465, 812, 1631, 1838, 2006 |
| StyD4I | CCNGG | 6 cut(s) | 160, 555, 1435, 1687, 2019, 2093 |
| StyI | CCWWGG | 3 cut(s) | 786, 1984, 1992 |
| TaaI | ACNGT | 2 cut(s) | 489, 1752 |
| TaiI | ACGT | 1 cut(s) | 481 |
| TaqI | TCGA | 7 cut(s) | 238, 331, 528, 1012, 1416, 1541, 2077 |
| TatI | WGTACW | 3 cut(s) | 199, 1337, 1429 |
| TfiI | GAWTC | 6 cut(s) | 146, 310, 410, 622, 629, 1051 |
| TscAI | CASTG | 4 cut(s) | 54, 726, 1534, 1745 |
| TseFI | GTSAC | 1 cut(s) | 20 |
| TseI | GCWGC | 4 cut(s) | 799, 846, 1230, 1708 |
| Tsp45I | GTSAC | 1 cut(s) | 20 |
| TspGWI | ACGGA | 1 cut(s) | 970 |
| TspRI | CASTG | 4 cut(s) | 54, 726, 1534, 1745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 1 cut(s) | 1273 |
| XapI | RAATTY | 7 cut(s) | 577, 1185, 1522, 1537, 1790, 1821, 2104 |
| XbaI | TCTAGA | 1 cut(s) | 811 |
| XceI | RCATGY | 2 cut(s) | 206, 1125 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1537, 1932 |
| XspI | CTAG | 5 cut(s) | 465, 812, 1631, 1838, 2006 |
| Zsp2I | ATGCAT | 1 cut(s) | 105 |