TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 167 | 1.3e-51 | TIR domain |
| TIR_2 | PF13676 | 26 - 121 | 3.2e-14 | TIR domain |
| WHD_ROQ1 | PF23282 | 219 - 287 | 1.4e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 364 - 487 | 1.5e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 478 - 561 | 2.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_At1g61320_AtMIF1 | PF23622 | 479 - 565 | 9.1e-06 | At1g61320/AtMIF1, LRR domain |
| LRR_14 | PF23598 | 486 - 560 | 3.4e-07 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 293 |
| AccI | GTMKAC | 1 cut(s) | 886 |
| AccII | CGCG | 1 cut(s) | 106 |
| AciI | CCGC | 3 cut(s) | 1002, 1469, 1730 |
| AcoI | YGGCCR | 1 cut(s) | 1357 |
| AcsI | RAATTY | 4 cut(s) | 976, 1032, 1141, 1272 |
| AcuI | CTGAAG | 1 cut(s) | 73 |
| AdeI | CACNNNGTG | 1 cut(s) | 1758 |
| AfaI | GTAC | 1 cut(s) | 131 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 23, 1096, 1355 |
| AflII | CTTAAG | 1 cut(s) | 1742 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1111, 1504 |
| AjnI | CCWGG | 3 cut(s) | 387, 1151, 1518 |
| AleI | CACNNNNGTG | 1 cut(s) | 1176 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1102, 1134 |
| Alw21I | GWGCWC | 1 cut(s) | 1682 |
| Alw26I | GTCTC | 5 cut(s) | 758, 1323, 1367, 1491, 1596 |
| AoxI | GGCC | 6 cut(s) | 121, 385, 774, 1181, 1357, 1576 |
| ApaI | GGGCCC | 1 cut(s) | 1185 |
| ApeKI | GCWGC | 5 cut(s) | 455, 470, 1168, 1405, 1732 |
| ApoI | RAATTY | 4 cut(s) | 976, 1032, 1141, 1272 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 846, 1716 |
| AspLEI | GCGC | 1 cut(s) | 108 |
| AspS9I | GGNCC | 4 cut(s) | 385, 1099, 1181, 1182 |
| AsuHPI | GGTGA | 5 cut(s) | 401, 407, 1076, 1381, 1508 |
| AvaII | GGWCC | 1 cut(s) | 1099 |
| BaeGI | GKGCMC | 1 cut(s) | 1185 |
| BamHI | GGATCC | 1 cut(s) | 646 |
| BanII | GRGCYC | 1 cut(s) | 1185 |
| BbsI | GAAGAC | 2 cut(s) | 39, 834 |
| Bbv12I | GWGCWC | 1 cut(s) | 1682 |
| BbvI | GCAGC | 5 cut(s) | 467, 482, 1155, 1392, 1719 |
| BccI | CCATC | 3 cut(s) | 494, 1253, 1633 |
| BceAI | ACGGC | 2 cut(s) | 1015, 1344 |
| BciT130I | CCWGG | 3 cut(s) | 389, 1153, 1520 |
| BciVI | GTATCC | 1 cut(s) | 94 |
| BclI | TGATCA | 1 cut(s) | 1425 |
| BcoDI | GTCTC | 5 cut(s) | 758, 1323, 1367, 1491, 1596 |
| BfaI | CTAG | 1 cut(s) | 1199 |
| BfmI | CTRYAG | 1 cut(s) | 1406 |
| BfrI | CTTAAG | 1 cut(s) | 1742 |
| BfuI | GTATCC | 1 cut(s) | 94 |
| BglII | AGATCT | 2 cut(s) | 300, 535 |
| BisI | GCNGC | 5 cut(s) | 456, 471, 1169, 1406, 1733 |
| BlsI | GCNGC | 5 cut(s) | 457, 472, 1170, 1407, 1734 |
| Bme1390I | CCNGG | 3 cut(s) | 389, 1153, 1520 |
| Bme18I | GGWCC | 1 cut(s) | 1099 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1111, 1504 |
| BmgT120I | GGNCC | 4 cut(s) | 385, 1099, 1181, 1182 |
| BmiI | GGNNCC | 5 cut(s) | 28, 386, 648, 1100, 1183 |
| BmrFI | CCNGG | 3 cut(s) | 389, 1153, 1520 |
| BmsI | GCATC | 4 cut(s) | 275, 388, 801, 1044 |
| BoxI | GACNNNNGTC | 1 cut(s) | 856 |
| BpiI | GAAGAC | 2 cut(s) | 39, 834 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 33 |
| BpmI | CTGGAG | 1 cut(s) | 1676 |
| Bpu10I | CCTNAGC | 1 cut(s) | 413 |
| BpuEI | CTTGAG | 2 cut(s) | 941, 1493 |
| BsaJI | CCNNGG | 1 cut(s) | 1151 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 23, 1096, 1355 |
| Bse1I | ACTGG | 3 cut(s) | 1090, 1112, 1579 |
| BseBI | CCWGG | 3 cut(s) | 389, 1153, 1520 |
| BseDI | CCNNGG | 1 cut(s) | 1151 |
| BseGI | GGATG | 6 cut(s) | 505, 562, 816, 910, 1059, 1116 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 23, 1096, 1355 |
| BseMII | CTCAG | 1 cut(s) | 1572 |
| BseNI | ACTGG | 3 cut(s) | 1090, 1112, 1579 |
| BseRI | GAGGAG | 3 cut(s) | 201, 1185, 1713 |
| BseSI | GKGCMC | 1 cut(s) | 1185 |
| BseXI | GCAGC | 5 cut(s) | 467, 482, 1155, 1392, 1719 |
| BsgI | GTGCAG | 2 cut(s) | 1154, 1171 |
| Bsh1236I | CGCG | 1 cut(s) | 106 |
| BshFI | GGCC | 6 cut(s) | 123, 387, 776, 1183, 1359, 1578 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1682 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 23, 1096, 1355 |
| BsmAI | GTCTC | 5 cut(s) | 758, 1323, 1367, 1491, 1596 |
| BsmBI | CGTCTC | 2 cut(s) | 758, 1367 |
| BsnI | GGCC | 6 cut(s) | 123, 387, 776, 1183, 1359, 1578 |
| Bsp120I | GGGCCC | 1 cut(s) | 1181 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1185, 1682 |
| Bsp1407I | TGTACA | 1 cut(s) | 129 |
| BspACI | CCGC | 3 cut(s) | 1002, 1469, 1730 |
| BspANI | GGCC | 6 cut(s) | 123, 387, 776, 1183, 1359, 1578 |
| BspCNI | CTCAG | 1 cut(s) | 1571 |
| BspFNI | CGCG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 5 cut(s) | 28, 386, 648, 1100, 1183 |
| BspMAI | CTGCAG | 1 cut(s) | 1410 |
| BspTI | CTTAAG | 1 cut(s) | 1742 |
| BsrGI | TGTACA | 1 cut(s) | 129 |
| BsrI | ACTGG | 3 cut(s) | 1090, 1112, 1579 |
| BssECI | CCNNGG | 1 cut(s) | 1151 |
| Bst2UI | CCWGG | 3 cut(s) | 389, 1153, 1520 |
| Bst4CI | ACNGT | 3 cut(s) | 891, 993, 1783 |
| Bst6I | CTCTTC | 2 cut(s) | 37, 43 |
| BstAFI | CTTAAG | 1 cut(s) | 1742 |
| BstAUI | TGTACA | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 1 cut(s) | 1469 |
| BstDEI | CTNAG | 3 cut(s) | 8, 413, 1558 |
| BstF5I | GGATG | 6 cut(s) | 505, 562, 816, 910, 1059, 1116 |
| BstFNI | CGCG | 1 cut(s) | 106 |
| BstHHI | GCGC | 1 cut(s) | 108 |
| BstMAI | GTCTC | 5 cut(s) | 758, 1323, 1367, 1491, 1596 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 263 |
| BstNI | CCWGG | 3 cut(s) | 389, 1153, 1520 |
| BstNSI | RCATGY | 1 cut(s) | 681 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 856 |
| BstSCI | CCNGG | 3 cut(s) | 387, 1151, 1518 |
| BstSFI | CTRYAG | 1 cut(s) | 1406 |
| BstSLI | GKGCMC | 1 cut(s) | 1185 |
| BstUI | CGCG | 1 cut(s) | 106 |
| BstV1I | GCAGC | 5 cut(s) | 467, 482, 1155, 1392, 1719 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 834 |
| BstX2I | RGATCY | 9 cut(s) | 4, 300, 358, 535, 568, 646, 915, 1453, 1522 |
| BstYI | RGATCY | 9 cut(s) | 4, 300, 358, 535, 568, 646, 915, 1453, 1522 |
| BsuI | GTATCC | 1 cut(s) | 94 |
| BsuRI | GGCC | 6 cut(s) | 123, 387, 776, 1183, 1359, 1578 |
| BtsCI | GGATG | 6 cut(s) | 505, 562, 816, 910, 1059, 1116 |
| BtsI | GCAGTG | 1 cut(s) | 1769 |
| BtsIMutI | CAGTG | 4 cut(s) | 1533, 1572, 1769, 1779 |
| Cac8I | GCNNGC | 1 cut(s) | 1469 |
| CfoI | GCGC | 1 cut(s) | 108 |
| Cfr13I | GGNCC | 4 cut(s) | 385, 1099, 1181, 1182 |
| Csp6I | GTAC | 1 cut(s) | 130 |
| CviAII | CATG | 6 cut(s) | 678, 766, 815, 832, 1174, 1501 |
| CviQI | GTAC | 1 cut(s) | 130 |
| DdeI | CTNAG | 3 cut(s) | 8, 413, 1558 |
| DraI | TTTAAA | 2 cut(s) | 688, 1039 |
| DraIII | CACNNNGTG | 1 cut(s) | 1758 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 293 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1111, 1504 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 293 |
| EaeI | YGGCCR | 1 cut(s) | 1357 |
| Eam1104I | CTCTTC | 2 cut(s) | 37, 43 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1111, 1504 |
| EarI | CTCTTC | 2 cut(s) | 37, 43 |
| EciI | GGCGGA | 1 cut(s) | 1017 |
| Eco147I | AGGCCT | 1 cut(s) | 776 |
| Eco24I | GRGCYC | 1 cut(s) | 1185 |
| Eco32I | GATATC | 1 cut(s) | 593 |
| Eco47I | GGWCC | 1 cut(s) | 1099 |
| Eco57I | CTGAAG | 1 cut(s) | 73 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1099, 1182 |
| EcoRI | GAATTC | 2 cut(s) | 976, 1272 |
| EcoRII | CCWGG | 3 cut(s) | 387, 1151, 1518 |
| EcoRV | GATATC | 1 cut(s) | 593 |
| EcoT22I | ATGCAT | 2 cut(s) | 268, 816 |
| EcoT38I | GRGCYC | 1 cut(s) | 1185 |
| Esp3I | CGTCTC | 2 cut(s) | 758, 1367 |
| FaeI | CATG | 6 cut(s) | 681, 769, 818, 835, 1177, 1504 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 266, 298, 651, 683, 1041, 1073 |
| FatI | CATG | 6 cut(s) | 677, 765, 814, 831, 1173, 1500 |
| FauI | CCCGC | 1 cut(s) | 1476 |
| FbaI | TGATCA | 1 cut(s) | 1425 |
| FblI | GTMKAC | 1 cut(s) | 886 |
| Fnu4HI | GCNGC | 5 cut(s) | 456, 471, 1169, 1406, 1733 |
| FokI | GGATG | 6 cut(s) | 512, 569, 823, 917, 1066, 1123 |
| FriOI | GRGCYC | 1 cut(s) | 1185 |
| Fsp4HI | GCNGC | 5 cut(s) | 456, 471, 1169, 1406, 1733 |
| FspBI | CTAG | 1 cut(s) | 1199 |
| GlaI | GCGC | 1 cut(s) | 107 |
| GluI | GCNGC | 5 cut(s) | 456, 471, 1169, 1406, 1733 |
| GsuI | CTGGAG | 1 cut(s) | 1676 |
| HaeIII | GGCC | 6 cut(s) | 123, 387, 776, 1183, 1359, 1578 |
| HhaI | GCGC | 1 cut(s) | 108 |
| Hin1II | CATG | 6 cut(s) | 681, 769, 818, 835, 1177, 1504 |
| Hin6I | GCGC | 1 cut(s) | 106 |
| HinP1I | GCGC | 1 cut(s) | 106 |
| HindIII | AAGCTT | 3 cut(s) | 1006, 1297, 1745 |
| HinfI | GANTC | 7 cut(s) | 317, 509, 607, 857, 1192, 1513, 1712 |
| HphI | GGTGA | 5 cut(s) | 401, 407, 1076, 1381, 1508 |
| Hpy166II | GTNNAC | 3 cut(s) | 66, 337, 887 |
| Hpy188III | TCNNGA | 9 cut(s) | 212, 298, 973, 1084, 1277, 1287, 1364, 1451, 1655 |
| Hpy8I | GTNNAC | 3 cut(s) | 66, 337, 887 |
| Hpy99I | CGWCG | 1 cut(s) | 367 |
| HpyAV | CCTTC | 7 cut(s) | 172, 218, 430, 445, 766, 1043, 1359 |
| HpyCH4III | ACNGT | 3 cut(s) | 891, 993, 1783 |
| HpyCH4IV | ACGT | 1 cut(s) | 1651 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 263 |
| HpyF3I | CTNAG | 3 cut(s) | 8, 413, 1558 |
| HpySE526I | ACGT | 1 cut(s) | 1651 |
| Hsp92II | CATG | 6 cut(s) | 681, 769, 818, 835, 1177, 1504 |
| HspAI | GCGC | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 1 cut(s) | 1425 |
| LmnI | GCTCC | 2 cut(s) | 26, 1312 |
| Lsp1109I | GCAGC | 5 cut(s) | 467, 482, 1155, 1392, 1719 |
| LweI | GCATC | 4 cut(s) | 275, 388, 801, 1044 |
| MaeI | CTAG | 1 cut(s) | 1199 |
| MaeII | ACGT | 1 cut(s) | 1651 |
| MaeIII | GTNAC | 5 cut(s) | 629, 692, 731, 1548, 1690 |
| MfeI | CAATTG | 1 cut(s) | 402 |
| MflI | RGATCY | 9 cut(s) | 4, 300, 358, 535, 568, 646, 915, 1453, 1522 |
| MhlI | GDGCHC | 2 cut(s) | 1185, 1682 |
| MlyI | GAGTC | 2 cut(s) | 866, 1186 |
| MmeI | TCCRAC | 4 cut(s) | 345, 428, 1543, 1724 |
| Mph1103I | ATGCAT | 2 cut(s) | 268, 816 |
| MroXI | GAANNNNTTC | 2 cut(s) | 846, 1716 |
| MslI | CAYNNNNRTG | 3 cut(s) | 809, 1176, 1326 |
| MspA1I | CMGCKG | 1 cut(s) | 1732 |
| MspCI | CTTAAG | 1 cut(s) | 1742 |
| MspR9I | CCNGG | 3 cut(s) | 389, 1153, 1520 |
| MunI | CAATTG | 1 cut(s) | 402 |
| MvaI | CCWGG | 3 cut(s) | 389, 1153, 1520 |
| MvnI | CGCG | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 263 |
| NlaIII | CATG | 6 cut(s) | 681, 769, 818, 835, 1177, 1504 |
| NlaIV | GGNNCC | 5 cut(s) | 28, 386, 648, 1100, 1183 |
| NmuCI | GTSAC | 1 cut(s) | 731 |
| NsiI | ATGCAT | 2 cut(s) | 268, 816 |
| NspI | RCATGY | 1 cut(s) | 681 |
| OliI | CACNNNNGTG | 1 cut(s) | 1176 |
| PceI | AGGCCT | 1 cut(s) | 776 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1136, 1371 |
| PdmI | GAANNNNTTC | 2 cut(s) | 846, 1716 |
| PfeI | GAWTC | 5 cut(s) | 317, 509, 607, 1513, 1712 |
| PkrI | GCNGC | 5 cut(s) | 457, 472, 1170, 1407, 1734 |
| PleI | GAGTC | 2 cut(s) | 865, 1186 |
| PpsI | GAGTC | 2 cut(s) | 865, 1186 |
| PpuMI | RGGWCCY | 1 cut(s) | 1099 |
| PshAI | GACNNNNGTC | 1 cut(s) | 856 |
| Psp5II | RGGWCCY | 1 cut(s) | 1099 |
| Psp6I | CCWGG | 3 cut(s) | 387, 1151, 1518 |
| PspGI | CCWGG | 3 cut(s) | 387, 1151, 1518 |
| PspN4I | GGNNCC | 5 cut(s) | 28, 386, 648, 1100, 1183 |
| PspOMI | GGGCCC | 1 cut(s) | 1181 |
| PspPI | GGNCC | 4 cut(s) | 385, 1099, 1181, 1182 |
| PspPPI | RGGWCCY | 1 cut(s) | 1099 |
| PstI | CTGCAG | 1 cut(s) | 1410 |
| PsuI | RGATCY | 9 cut(s) | 4, 300, 358, 535, 568, 646, 915, 1453, 1522 |
| RsaI | GTAC | 1 cut(s) | 131 |
| RsaNI | GTAC | 1 cut(s) | 130 |
| RseI | CAYNNNNRTG | 3 cut(s) | 809, 1176, 1326 |
| SatI | GCNGC | 5 cut(s) | 456, 471, 1169, 1406, 1733 |
| Sau96I | GGNCC | 4 cut(s) | 385, 1099, 1181, 1182 |
| SchI | GAGTC | 2 cut(s) | 866, 1186 |
| ScrFI | CCNGG | 3 cut(s) | 389, 1153, 1520 |
| SduI | GDGCHC | 2 cut(s) | 1185, 1682 |
| SfaNI | GCATC | 4 cut(s) | 275, 388, 801, 1044 |
| SfcI | CTRYAG | 1 cut(s) | 1406 |
| SinI | GGWCC | 1 cut(s) | 1099 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 809, 1176, 1326 |
| SmlI | CTYRAG | 3 cut(s) | 920, 1472, 1742 |
| SmoI | CTYRAG | 3 cut(s) | 920, 1472, 1742 |
| SseBI | AGGCCT | 1 cut(s) | 776 |
| SsiI | CCGC | 3 cut(s) | 1002, 1469, 1730 |
| SspMI | CTAG | 1 cut(s) | 1199 |
| StuI | AGGCCT | 1 cut(s) | 776 |
| StyD4I | CCNGG | 3 cut(s) | 387, 1151, 1518 |
| TaaI | ACNGT | 3 cut(s) | 891, 993, 1783 |
| TaiI | ACGT | 1 cut(s) | 1654 |
| TaqI | TCGA | 7 cut(s) | 213, 320, 850, 972, 1044, 1365, 1628 |
| TatI | WGTACW | 1 cut(s) | 129 |
| TfiI | GAWTC | 5 cut(s) | 317, 509, 607, 1513, 1712 |
| TscAI | CASTG | 4 cut(s) | 1540, 1579, 1769, 1786 |
| TseFI | GTSAC | 1 cut(s) | 731 |
| TseI | GCWGC | 5 cut(s) | 455, 470, 1168, 1405, 1732 |
| Tsp45I | GTSAC | 1 cut(s) | 731 |
| TspDTI | ATGAA | 6 cut(s) | 30, 154, 659, 1062, 1110, 1517 |
| TspGWI | ACGGA | 3 cut(s) | 351, 502, 953 |
| TspRI | CASTG | 4 cut(s) | 1540, 1579, 1769, 1786 |
| Vha464I | CTTAAG | 1 cut(s) | 1742 |
| VpaK11BI | GGWCC | 1 cut(s) | 1099 |
| XapI | RAATTY | 4 cut(s) | 976, 1032, 1141, 1272 |
| XceI | RCATGY | 1 cut(s) | 681 |
| XmiI | GTMKAC | 1 cut(s) | 886 |
| XmnI | GAANNNNTTC | 2 cut(s) | 846, 1716 |
| XspI | CTAG | 1 cut(s) | 1199 |
| Zsp2I | ATGCAT | 2 cut(s) | 268, 816 |