TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 89 - 156 | 2.8e-17 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1133 |
| AclWI | GGATC | 2 cut(s) | 1118, 1131 |
| AcsI | RAATTY | 3 cut(s) | 817, 857, 1079 |
| AcvI | CACGTG | 1 cut(s) | 319 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 359, 1133 |
| AflII | CTTAAG | 1 cut(s) | 1111 |
| AgsI | TTSAA | 5 cut(s) | 40, 49, 79, 368, 982 |
| AjnI | CCWGG | 1 cut(s) | 478 |
| AluBI | AGCT | 7 cut(s) | 125, 338, 578, 609, 648, 970, 1029 |
| AluI | AGCT | 7 cut(s) | 125, 338, 578, 609, 648, 970, 1029 |
| Alw26I | GTCTC | 1 cut(s) | 647 |
| AlwI | GGATC | 2 cut(s) | 1118, 1131 |
| AoxI | GGCC | 2 cut(s) | 112, 384 |
| ApeKI | GCWGC | 2 cut(s) | 17, 645 |
| ApoI | RAATTY | 3 cut(s) | 817, 857, 1079 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 44 |
| AspLEI | GCGC | 1 cut(s) | 769 |
| AspS9I | GGNCC | 2 cut(s) | 385, 517 |
| AsuC2I | CCSGG | 1 cut(s) | 353 |
| AsuHPI | GGTGA | 2 cut(s) | 367, 459 |
| AvaII | GGWCC | 1 cut(s) | 517 |
| BamHI | GGATCC | 1 cut(s) | 1123 |
| BanII | GRGCYC | 1 cut(s) | 143 |
| BbrPI | CACGTG | 1 cut(s) | 319 |
| BbsI | GAAGAC | 1 cut(s) | 1046 |
| BbvI | GCAGC | 2 cut(s) | 4, 657 |
| BccI | CCATC | 6 cut(s) | 391, 395, 745, 911, 1096, 1135 |
| BciT130I | CCWGG | 1 cut(s) | 480 |
| BcnI | CCSGG | 1 cut(s) | 353 |
| BcoDI | GTCTC | 1 cut(s) | 647 |
| BfmI | CTRYAG | 1 cut(s) | 579 |
| BfrI | CTTAAG | 1 cut(s) | 1111 |
| BglII | AGATCT | 1 cut(s) | 904 |
| BisI | GCNGC | 2 cut(s) | 18, 646 |
| BlsI | GCNGC | 2 cut(s) | 19, 647 |
| Bme1390I | CCNGG | 2 cut(s) | 353, 480 |
| Bme18I | GGWCC | 1 cut(s) | 517 |
| BmgT120I | GGNCC | 2 cut(s) | 385, 517 |
| BmiI | GGNNCC | 1 cut(s) | 1125 |
| BmrFI | CCNGG | 2 cut(s) | 353, 480 |
| BmsI | GCATC | 6 cut(s) | 4, 235, 408, 466, 570, 798 |
| BpiI | GAAGAC | 1 cut(s) | 1046 |
| BpmI | CTGGAG | 1 cut(s) | 687 |
| BpuMI | CCSGG | 1 cut(s) | 353 |
| BsaAI | YACGTR | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 1 cut(s) | 109 |
| BsaWI | WCCGGW | 2 cut(s) | 250, 539 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 359, 1133 |
| Bse1I | ACTGG | 1 cut(s) | 336 |
| BseBI | CCWGG | 1 cut(s) | 480 |
| BseDI | CCNNGG | 1 cut(s) | 109 |
| BseGI | GGATG | 7 cut(s) | 406, 410, 423, 517, 561, 656, 737 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 359, 1133 |
| BseNI | ACTGG | 1 cut(s) | 336 |
| BseXI | GCAGC | 2 cut(s) | 4, 657 |
| BshFI | GGCC | 2 cut(s) | 114, 386 |
| BsiSI | CCGG | 3 cut(s) | 251, 353, 540 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 359, 1133 |
| BsmAI | GTCTC | 1 cut(s) | 647 |
| BsmI | GAATGC | 2 cut(s) | 44, 46 |
| BsnI | GGCC | 2 cut(s) | 114, 386 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| BspANI | GGCC | 2 cut(s) | 114, 386 |
| BspLI | GGNNCC | 1 cut(s) | 1125 |
| BspPI | GGATC | 2 cut(s) | 1118, 1131 |
| BspTI | CTTAAG | 1 cut(s) | 1111 |
| BsrI | ACTGG | 1 cut(s) | 336 |
| BssECI | CCNNGG | 1 cut(s) | 109 |
| BssMI | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| BssT1I | CCWWGG | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 1 cut(s) | 480 |
| Bst4CI | ACNGT | 2 cut(s) | 191, 310 |
| BstAFI | CTTAAG | 1 cut(s) | 1111 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 92 |
| BstBAI | YACGTR | 1 cut(s) | 319 |
| BstDEI | CTNAG | 2 cut(s) | 230, 629 |
| BstF5I | GGATG | 7 cut(s) | 406, 410, 423, 517, 561, 656, 737 |
| BstHHI | GCGC | 1 cut(s) | 769 |
| BstKTI | GATC | 4 cut(s) | 346, 475, 907, 1126 |
| BstMAI | GTCTC | 1 cut(s) | 647 |
| BstMBI | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 709, 967 |
| BstNI | CCWGG | 1 cut(s) | 480 |
| BstSCI | CCNGG | 2 cut(s) | 351, 478 |
| BstSFI | CTRYAG | 1 cut(s) | 579 |
| BstV1I | GCAGC | 2 cut(s) | 4, 657 |
| BstV2I | GAAGAC | 1 cut(s) | 1046 |
| BstX2I | RGATCY | 2 cut(s) | 904, 1123 |
| BstYI | RGATCY | 2 cut(s) | 904, 1123 |
| BsuRI | GGCC | 2 cut(s) | 114, 386 |
| BtsCI | GGATG | 7 cut(s) | 406, 410, 423, 517, 561, 656, 737 |
| BtsI | GCAGTG | 1 cut(s) | 176 |
| BtsIMutI | CAGTG | 1 cut(s) | 176 |
| CfoI | GCGC | 1 cut(s) | 769 |
| Cfr13I | GGNCC | 2 cut(s) | 385, 517 |
| CviAII | CATG | 1 cut(s) | 422 |
| DdeI | CTNAG | 2 cut(s) | 230, 629 |
| DpnI | GATC | 4 cut(s) | 345, 474, 906, 1125 |
| DpnII | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| DraI | TTTAAA | 1 cut(s) | 597 |
| Eco130I | CCWWGG | 1 cut(s) | 109 |
| Eco147I | AGGCCT | 1 cut(s) | 114 |
| Eco24I | GRGCYC | 1 cut(s) | 143 |
| Eco47I | GGWCC | 1 cut(s) | 517 |
| Eco72I | CACGTG | 1 cut(s) | 319 |
| EcoO109I | RGGNCCY | 1 cut(s) | 385 |
| EcoRI | GAATTC | 1 cut(s) | 857 |
| EcoRII | CCWGG | 1 cut(s) | 478 |
| EcoT14I | CCWWGG | 1 cut(s) | 109 |
| EcoT22I | ATGCAT | 2 cut(s) | 46, 423 |
| EcoT38I | GRGCYC | 1 cut(s) | 143 |
| ErhI | CCWWGG | 1 cut(s) | 109 |
| FaeI | CATG | 1 cut(s) | 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 213, 245 |
| FatI | CATG | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 2 cut(s) | 18, 646 |
| FokI | GGATG | 7 cut(s) | 413, 417, 430, 524, 548, 643, 724 |
| FriOI | GRGCYC | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 2 cut(s) | 18, 646 |
| GlaI | GCGC | 1 cut(s) | 768 |
| GluI | GCNGC | 2 cut(s) | 18, 646 |
| GsuI | CTGGAG | 1 cut(s) | 687 |
| HaeIII | GGCC | 2 cut(s) | 114, 386 |
| HapII | CCGG | 3 cut(s) | 251, 353, 540 |
| HhaI | GCGC | 1 cut(s) | 769 |
| Hin1II | CATG | 1 cut(s) | 425 |
| Hin6I | GCGC | 1 cut(s) | 767 |
| HinP1I | GCGC | 1 cut(s) | 767 |
| HindIII | AAGCTT | 3 cut(s) | 336, 607, 968 |
| HinfI | GANTC | 4 cut(s) | 464, 888, 982, 1071 |
| HpaII | CCGG | 3 cut(s) | 251, 353, 540 |
| HphI | GGTGA | 2 cut(s) | 367, 459 |
| Hpy166II | GTNNAC | 2 cut(s) | 313, 517 |
| Hpy188I | TCNGA | 2 cut(s) | 616, 956 |
| Hpy188III | TCNNGA | 5 cut(s) | 278, 461, 666, 779, 989 |
| Hpy8I | GTNNAC | 2 cut(s) | 313, 517 |
| HpyAV | CCTTC | 2 cut(s) | 125, 248 |
| HpyCH4III | ACNGT | 2 cut(s) | 191, 310 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 487 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 709, 967 |
| HpyF3I | CTNAG | 2 cut(s) | 230, 629 |
| HpySE526I | ACGT | 2 cut(s) | 318, 487 |
| Hsp92II | CATG | 1 cut(s) | 425 |
| HspAI | GCGC | 1 cut(s) | 767 |
| Kzo9I | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| Lsp1109I | GCAGC | 2 cut(s) | 4, 657 |
| LweI | GCATC | 6 cut(s) | 4, 235, 408, 466, 570, 798 |
| MaeII | ACGT | 2 cut(s) | 318, 487 |
| MaeIII | GTNAC | 2 cut(s) | 465, 973 |
| MalI | GATC | 4 cut(s) | 345, 474, 906, 1125 |
| MboI | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| MboII | GAAGA | 3 cut(s) | 446, 977, 1046 |
| MfeI | CAATTG | 2 cut(s) | 1060, 1131 |
| MflI | RGATCY | 2 cut(s) | 904, 1123 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MlyI | GAGTC | 2 cut(s) | 473, 1065 |
| MmeI | TCCRAC | 2 cut(s) | 934, 1126 |
| MnlI | CCTC | 7 cut(s) | 72, 216, 502, 690, 799, 902, 931 |
| Mph1103I | ATGCAT | 2 cut(s) | 46, 423 |
| MroXI | GAANNNNTTC | 1 cut(s) | 44 |
| MslI | CAYNNNNRTG | 3 cut(s) | 566, 799, 915 |
| MspCI | CTTAAG | 1 cut(s) | 1111 |
| MspI | CCGG | 3 cut(s) | 251, 353, 540 |
| MspR9I | CCNGG | 2 cut(s) | 353, 480 |
| MunI | CAATTG | 2 cut(s) | 1060, 1131 |
| Mva1269I | GAATGC | 2 cut(s) | 44, 46 |
| MvaI | CCWGG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 709, 967 |
| NciI | CCSGG | 1 cut(s) | 353 |
| NdeII | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| NlaIII | CATG | 1 cut(s) | 425 |
| NlaIV | GGNNCC | 1 cut(s) | 1125 |
| NmuCI | GTSAC | 1 cut(s) | 465 |
| NsiI | ATGCAT | 2 cut(s) | 46, 423 |
| PceI | AGGCCT | 1 cut(s) | 114 |
| PctI | GAATGC | 2 cut(s) | 44, 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 44 |
| PfeI | GAWTC | 2 cut(s) | 888, 982 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1133 |
| PkrI | GCNGC | 2 cut(s) | 19, 647 |
| PleI | GAGTC | 2 cut(s) | 472, 1065 |
| PmaCI | CACGTG | 1 cut(s) | 319 |
| PmlI | CACGTG | 1 cut(s) | 319 |
| PpsI | GAGTC | 2 cut(s) | 472, 1065 |
| Ppu21I | YACGTR | 1 cut(s) | 319 |
| Psp6I | CCWGG | 1 cut(s) | 478 |
| PspCI | CACGTG | 1 cut(s) | 319 |
| PspGI | CCWGG | 1 cut(s) | 478 |
| PspN4I | GGNNCC | 1 cut(s) | 1125 |
| PspPI | GGNCC | 2 cut(s) | 385, 517 |
| PsuI | RGATCY | 2 cut(s) | 904, 1123 |
| RseI | CAYNNNNRTG | 3 cut(s) | 566, 799, 915 |
| SatI | GCNGC | 2 cut(s) | 18, 646 |
| Sau3AI | GATC | 4 cut(s) | 343, 472, 904, 1123 |
| Sau96I | GGNCC | 2 cut(s) | 385, 517 |
| SchI | GAGTC | 2 cut(s) | 473, 1065 |
| ScrFI | CCNGG | 2 cut(s) | 353, 480 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| SfaNI | GCATC | 6 cut(s) | 4, 235, 408, 466, 570, 798 |
| SfcI | CTRYAG | 1 cut(s) | 579 |
| SinI | GGWCC | 1 cut(s) | 517 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 566, 799, 915 |
| SmlI | CTYRAG | 1 cut(s) | 1111 |
| SmoI | CTYRAG | 1 cut(s) | 1111 |
| SseBI | AGGCCT | 1 cut(s) | 114 |
| SspI | AATATT | 2 cut(s) | 99, 775 |
| StuI | AGGCCT | 1 cut(s) | 114 |
| StyD4I | CCNGG | 2 cut(s) | 351, 478 |
| StyI | CCWWGG | 1 cut(s) | 109 |
| TaaI | ACNGT | 2 cut(s) | 191, 310 |
| TaiI | ACGT | 2 cut(s) | 321, 490 |
| TaqI | TCGA | 1 cut(s) | 1041 |
| TfiI | GAWTC | 2 cut(s) | 888, 982 |
| TscAI | CASTG | 1 cut(s) | 176 |
| TseFI | GTSAC | 1 cut(s) | 465 |
| TseI | GCWGC | 2 cut(s) | 17, 645 |
| Tsp45I | GTSAC | 1 cut(s) | 465 |
| TspDTI | ATGAA | 2 cut(s) | 635, 932 |
| TspRI | CASTG | 1 cut(s) | 176 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1133 |
| Vha464I | CTTAAG | 1 cut(s) | 1111 |
| VpaK11BI | GGWCC | 1 cut(s) | 517 |
| XapI | RAATTY | 3 cut(s) | 817, 857, 1079 |
| XmnI | GAANNNNTTC | 1 cut(s) | 44 |
| Zsp2I | ATGCAT | 2 cut(s) | 46, 423 |