TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 72 - 233 | 1.7e-54 | TIR domain |
| TIR_2 | PF13676 | 74 - 170 | 5.3e-14 | TIR domain |
| NB-ARC | PF00931 | 250 - 420 | 3.5e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 492 - 560 | 3.7e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 740 - 832 | 2.5e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 750 - 839 | 3.5e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 887 - 982 | 2.4e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1856, 3420 |
| AccB1I | GGYRCC | 1 cut(s) | 522 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2988 |
| AccII | CGCG | 1 cut(s) | 753 |
| AciI | CCGC | 6 cut(s) | 86, 751, 825, 1683, 2784, 3444 |
| AclI | AACGTT | 1 cut(s) | 2654 |
| AclWI | GGATC | 3 cut(s) | 500, 513, 1460 |
| AcoI | YGGCCR | 1 cut(s) | 485 |
| AcuI | CTGAAG | 3 cut(s) | 146, 2041, 3490 |
| AfaI | GTAC | 4 cut(s) | 134, 519, 1581, 2140 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 423, 519, 932, 2113, 2168, 2503, 2988 |
| AflII | CTTAAG | 2 cut(s) | 767, 2219 |
| AgeI | ACCGGT | 1 cut(s) | 91 |
| AhlI | ACTAGT | 2 cut(s) | 1607, 1972 |
| AjnI | CCWGG | 4 cut(s) | 1017, 1924, 3453, 3492 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 461, 493, 1422, 1454 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 780, 812, 924, 956 |
| Alw21I | GWGCWC | 1 cut(s) | 2673 |
| Alw26I | GTCTC | 2 cut(s) | 2738, 2986 |
| AlwI | GGATC | 3 cut(s) | 500, 513, 1460 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 82, 1691, 3499 |
| AoxI | GGCC | 8 cut(s) | 265, 485, 934, 1321, 1593, 1922, 3048, 3222 |
| ApeKI | GCWGC | 8 cut(s) | 76, 614, 1131, 1388, 2155, 2277, 3373, 3441 |
| AseI | ATTAAT | 2 cut(s) | 300, 1863 |
| AsiGI | ACCGGT | 1 cut(s) | 91 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1250, 1482, 1665 |
| AspS9I | GGNCC | 6 cut(s) | 94, 935, 979, 1594, 3223, 3581 |
| AsuC2I | CCSGG | 1 cut(s) | 2859 |
| AsuHPI | GGTGA | 9 cut(s) | 103, 190, 554, 1033, 1523, 1671, 2539, 3326, 3443 |
| AsuII | TTCGAA | 1 cut(s) | 2435 |
| AvaII | GGWCC | 3 cut(s) | 94, 979, 3581 |
| AxyI | CCTNAGG | 1 cut(s) | 418 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BanI | GGYRCC | 1 cut(s) | 522 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 521, 553 |
| BauI | CACGAG | 1 cut(s) | 2714 |
| BbsI | GAAGAC | 2 cut(s) | 2771, 2822 |
| Bbv12I | GWGCWC | 1 cut(s) | 2673 |
| BbvI | GCAGC | 8 cut(s) | 88, 626, 1143, 1375, 2142, 2264, 3360, 3428 |
| BccI | CCATC | 8 cut(s) | 43, 585, 638, 1391, 1957, 2311, 2363, 2377 |
| BceAI | ACGGC | 4 cut(s) | 154, 536, 615, 1336 |
| BciT130I | CCWGG | 4 cut(s) | 1019, 1926, 3455, 3494 |
| BciVI | GTATCC | 2 cut(s) | 238, 741 |
| BclI | TGATCA | 2 cut(s) | 2638, 3034 |
| BcnI | CCSGG | 1 cut(s) | 2859 |
| BcoDI | GTCTC | 2 cut(s) | 2738, 2986 |
| BcuI | ACTAGT | 2 cut(s) | 1607, 1972 |
| BfaI | CTAG | 6 cut(s) | 1541, 1608, 1973, 2471, 2666, 3251 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BfrI | CTTAAG | 2 cut(s) | 767, 2219 |
| BfuI | GTATCC | 2 cut(s) | 238, 741 |
| BisI | GCNGC | 9 cut(s) | 77, 86, 615, 1132, 1389, 2156, 2278, 3374, 3442 |
| BlsI | GCNGC | 9 cut(s) | 78, 87, 616, 1133, 1390, 2157, 2279, 3375, 3443 |
| BmcAI | AGTACT | 1 cut(s) | 1581 |
| Bme1390I | CCNGG | 5 cut(s) | 1019, 1926, 2859, 3455, 3494 |
| Bme18I | GGWCC | 3 cut(s) | 94, 979, 3581 |
| BmgT120I | GGNCC | 6 cut(s) | 94, 935, 979, 1594, 3223, 3581 |
| BmiI | GGNNCC | 7 cut(s) | 142, 507, 524, 980, 1913, 2856, 3429 |
| BmrFI | CCNGG | 5 cut(s) | 1019, 1926, 2859, 3455, 3494 |
| BmrI | ACTGGG | 1 cut(s) | 932 |
| BmuI | ACTGGG | 1 cut(s) | 932 |
| BpiI | GAAGAC | 2 cut(s) | 2771, 2822 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 586, 618 |
| BpmI | CTGGAG | 5 cut(s) | 699, 1125, 1664, 1899, 2703 |
| Bpu14I | TTCGAA | 1 cut(s) | 2435 |
| BpuEI | CTTGAG | 5 cut(s) | 1831, 2009, 2273, 3553, 3578 |
| BpuMI | CCSGG | 1 cut(s) | 2859 |
| Bsa29I | ATCGAT | 1 cut(s) | 38 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1728, 2637 |
| BsaJI | CCNNGG | 5 cut(s) | 114, 928, 1203, 2858, 3492 |
| BsaWI | WCCGGW | 2 cut(s) | 91, 981 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 125, 155, 924, 954, 2983, 3013, 3396, 3426 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 423, 519, 932, 2113, 2168, 2503, 2988 |
| Bse118I | RCCGGY | 2 cut(s) | 91, 487 |
| Bse1I | ACTGG | 4 cut(s) | 873, 938, 1087, 2508 |
| Bse21I | CCTNAGG | 1 cut(s) | 418 |
| Bse3DI | GCAATG | 1 cut(s) | 1491 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1728, 2637 |
| BseBI | CCWGG | 4 cut(s) | 1019, 1926, 3455, 3494 |
| BseCI | ATCGAT | 1 cut(s) | 38 |
| BseDI | CCNNGG | 5 cut(s) | 114, 928, 1203, 2858, 3492 |
| BseJI | GATNNNNATC | 2 cut(s) | 1728, 2637 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 423, 519, 932, 2113, 2168, 2503, 2988 |
| BseMI | GCAATG | 1 cut(s) | 1491 |
| BseMII | CTCAG | 3 cut(s) | 432, 2461, 3092 |
| BseNI | ACTGG | 4 cut(s) | 873, 938, 1087, 2508 |
| BseRI | GAGGAG | 4 cut(s) | 83, 131, 134, 183 |
| BseXI | GCAGC | 8 cut(s) | 88, 626, 1143, 1375, 2142, 2264, 3360, 3428 |
| BseYI | CCCAGC | 1 cut(s) | 1933 |
| BsgI | GTGCAG | 1 cut(s) | 336 |
| Bsh1236I | CGCG | 1 cut(s) | 753 |
| BshFI | GGCC | 8 cut(s) | 267, 487, 936, 1323, 1595, 1924, 3050, 3224 |
| BshNI | GGYRCC | 1 cut(s) | 522 |
| BshTI | ACCGGT | 1 cut(s) | 91 |
| BshVI | ATCGAT | 1 cut(s) | 38 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2673 |
| BsiSI | CCGG | 4 cut(s) | 92, 488, 982, 2858 |
| BslFI | GGGAC | 2 cut(s) | 733, 992 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 423, 519, 932, 2113, 2168, 2503, 2988 |
| BsmAI | GTCTC | 2 cut(s) | 2738, 2986 |
| BsmBI | CGTCTC | 1 cut(s) | 2738 |
| BsmFI | GGGAC | 2 cut(s) | 733, 992 |
| BsmI | GAATGC | 3 cut(s) | 1252, 2451, 3089 |
| BsnI | GGCC | 8 cut(s) | 267, 487, 936, 1323, 1595, 1924, 3050, 3224 |
| Bsp119I | TTCGAA | 1 cut(s) | 2435 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2673 |
| Bsp1407I | TGTACA | 1 cut(s) | 2138 |
| Bsp19I | CCATGG | 1 cut(s) | 928 |
| BspACI | CCGC | 6 cut(s) | 86, 751, 825, 1683, 2784, 3444 |
| BspANI | GGCC | 8 cut(s) | 267, 487, 936, 1323, 1595, 1924, 3050, 3224 |
| BspCNI | CTCAG | 3 cut(s) | 431, 2460, 3091 |
| BspDI | ATCGAT | 1 cut(s) | 38 |
| BspFNI | CGCG | 1 cut(s) | 753 |
| BspHI | TCATGA | 2 cut(s) | 1717, 2455 |
| BspLI | GGNNCC | 7 cut(s) | 142, 507, 524, 980, 1913, 2856, 3429 |
| BspPI | GGATC | 3 cut(s) | 500, 513, 1460 |
| BspQI | GCTCTTC | 1 cut(s) | 3330 |
| BspT104I | TTCGAA | 1 cut(s) | 2435 |
| BspT107I | GGYRCC | 1 cut(s) | 522 |
| BspTI | CTTAAG | 2 cut(s) | 767, 2219 |
| BsrDI | GCAATG | 1 cut(s) | 1491 |
| BsrFI | RCCGGY | 2 cut(s) | 91, 487 |
| BsrGI | TGTACA | 1 cut(s) | 2138 |
| BsrI | ACTGG | 4 cut(s) | 873, 938, 1087, 2508 |
| BssAI | RCCGGY | 2 cut(s) | 91, 487 |
| BssECI | CCNNGG | 5 cut(s) | 114, 928, 1203, 2858, 3492 |
| BssSI | CACGAG | 1 cut(s) | 2714 |
| BssT1I | CCWWGG | 2 cut(s) | 928, 1203 |
| Bst2BI | CACGAG | 1 cut(s) | 2714 |
| Bst2UI | CCWGG | 4 cut(s) | 1019, 1926, 3455, 3494 |
| Bst4CI | ACNGT | 9 cut(s) | 542, 1997, 2537, 2621, 2627, 2997, 3168, 3381, 3585 |
| Bst6I | CTCTTC | 5 cut(s) | 55, 193, 3062, 3079, 3330 |
| BstAFI | CTTAAG | 2 cut(s) | 767, 2219 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 82, 1639 |
| BstAUI | TGTACA | 1 cut(s) | 2138 |
| BstBI | TTCGAA | 1 cut(s) | 2435 |
| BstC8I | GCNNGC | 6 cut(s) | 1386, 1536, 1693, 1870, 2788, 3238 |
| BstDEI | CTNAG | 8 cut(s) | 326, 418, 1057, 2051, 2075, 2447, 2740, 3078 |
| BstDSI | CCRYGG | 1 cut(s) | 928 |
| BstFNI | CGCG | 1 cut(s) | 753 |
| BstMAI | GTCTC | 2 cut(s) | 2738, 2986 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 82, 85, 831, 1639, 1701, 1987, 2792, 3256 |
| BstNI | CCWGG | 4 cut(s) | 1019, 1926, 3455, 3494 |
| BstNSI | RCATGY | 3 cut(s) | 1388, 1500, 1571 |
| BstSCI | CCNGG | 5 cut(s) | 1017, 1924, 2857, 3453, 3492 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstUI | CGCG | 1 cut(s) | 753 |
| BstV1I | GCAGC | 8 cut(s) | 88, 626, 1143, 1375, 2142, 2264, 3360, 3428 |
| BstV2I | GAAGAC | 2 cut(s) | 2771, 2822 |
| BstX2I | RGATCY | 2 cut(s) | 505, 1465 |
| BstYI | RGATCY | 2 cut(s) | 505, 1465 |
| Bsu15I | ATCGAT | 1 cut(s) | 38 |
| Bsu36I | CCTNAGG | 1 cut(s) | 418 |
| BsuI | GTATCC | 2 cut(s) | 238, 741 |
| BsuRI | GGCC | 8 cut(s) | 267, 487, 936, 1323, 1595, 1924, 3050, 3224 |
| BsuTUI | ATCGAT | 1 cut(s) | 38 |
| BtgI | CCRYGG | 1 cut(s) | 928 |
| BtsI | GCAGTG | 1 cut(s) | 3531 |
| BtsIMutI | CAGTG | 2 cut(s) | 3497, 3531 |
| Cac8I | GCNNGC | 6 cut(s) | 1386, 1536, 1693, 1870, 2788, 3238 |
| CaiI | CAGNNNCTG | 3 cut(s) | 82, 1691, 3499 |
| CciI | TCATGA | 2 cut(s) | 1717, 2455 |
| Cfr10I | RCCGGY | 2 cut(s) | 91, 487 |
| Cfr13I | GGNCC | 6 cut(s) | 94, 935, 979, 1594, 3223, 3581 |
| ClaI | ATCGAT | 1 cut(s) | 38 |
| CseI | GACGC | 3 cut(s) | 2728, 2755, 2827 |
| CsiI | ACCWGGT | 1 cut(s) | 3453 |
| Csp6I | GTAC | 4 cut(s) | 133, 518, 1580, 2139 |
| CspAI | ACCGGT | 1 cut(s) | 91 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2856, 2891 |
| CviQI | GTAC | 4 cut(s) | 133, 518, 1580, 2139 |
| DdeI | CTNAG | 8 cut(s) | 326, 418, 1057, 2051, 2075, 2447, 2740, 3078 |
| DraI | TTTAAA | 3 cut(s) | 717, 1828, 2130 |
| EaeI | YGGCCR | 1 cut(s) | 485 |
| Eam1104I | CTCTTC | 5 cut(s) | 55, 193, 3062, 3079, 3330 |
| EarI | CTCTTC | 5 cut(s) | 55, 193, 3062, 3079, 3330 |
| Eco130I | CCWWGG | 2 cut(s) | 928, 1203 |
| Eco32I | GATATC | 1 cut(s) | 1426 |
| Eco47I | GGWCC | 3 cut(s) | 94, 979, 3581 |
| Eco57I | CTGAAG | 3 cut(s) | 146, 2041, 3490 |
| Eco81I | CCTNAGG | 1 cut(s) | 418 |
| EcoRI | GAATTC | 1 cut(s) | 2081 |
| EcoRII | CCWGG | 4 cut(s) | 1017, 1924, 3453, 3492 |
| EcoRV | GATATC | 1 cut(s) | 1426 |
| EcoT14I | CCWWGG | 2 cut(s) | 928, 1203 |
| EcoT22I | ATGCAT | 2 cut(s) | 1459, 1635 |
| ErhI | CCWWGG | 2 cut(s) | 928, 1203 |
| Esp3I | CGTCTC | 1 cut(s) | 2738 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 750, 782, 3416, 3448 |
| FaqI | GGGAC | 2 cut(s) | 733, 992 |
| FauI | CCCGC | 4 cut(s) | 758, 818, 1690, 2791 |
| FbaI | TGATCA | 2 cut(s) | 2638, 3034 |
| Fnu4HI | GCNGC | 9 cut(s) | 77, 86, 615, 1132, 1389, 2156, 2278, 3374, 3442 |
| Fsp4HI | GCNGC | 9 cut(s) | 77, 86, 615, 1132, 1389, 2156, 2278, 3374, 3442 |
| FspBI | CTAG | 6 cut(s) | 1541, 1608, 1973, 2471, 2666, 3251 |
| GluI | GCNGC | 9 cut(s) | 77, 86, 615, 1132, 1389, 2156, 2278, 3374, 3442 |
| GsaI | CCCAGC | 1 cut(s) | 1937 |
| GsuI | CTGGAG | 5 cut(s) | 699, 1125, 1664, 1899, 2703 |
| HaeIII | GGCC | 8 cut(s) | 267, 487, 936, 1323, 1595, 1924, 3050, 3224 |
| HapII | CCGG | 4 cut(s) | 92, 488, 982, 2858 |
| HgaI | GACGC | 3 cut(s) | 2728, 2755, 2827 |
| HincII | GTYRAC | 2 cut(s) | 2191, 2242 |
| HindII | GTYRAC | 2 cut(s) | 2191, 2242 |
| HindIII | AAGCTT | 3 cut(s) | 770, 2053, 2183 |
| HpaII | CCGG | 4 cut(s) | 92, 488, 982, 2858 |
| HphI | GGTGA | 9 cut(s) | 103, 190, 554, 1033, 1523, 1671, 2539, 3326, 3443 |
| Hpy166II | GTNNAC | 7 cut(s) | 633, 859, 1352, 2191, 2242, 3451, 3529 |
| Hpy8I | GTNNAC | 7 cut(s) | 633, 859, 1352, 2191, 2242, 3451, 3529 |
| Hpy99I | CGWCG | 1 cut(s) | 140 |
| HpyCH4III | ACNGT | 9 cut(s) | 542, 1997, 2537, 2621, 2627, 2997, 3168, 3381, 3585 |
| HpyCH4IV | ACGT | 5 cut(s) | 706, 1699, 2555, 2575, 2654 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 82, 85, 831, 1639, 1701, 1987, 2792, 3256 |
| HpyF3I | CTNAG | 8 cut(s) | 326, 418, 1057, 2051, 2075, 2447, 2740, 3078 |
| HpySE526I | ACGT | 5 cut(s) | 706, 1699, 2555, 2575, 2654 |
| Ksp22I | TGATCA | 2 cut(s) | 2638, 3034 |
| LguI | GCTCTTC | 1 cut(s) | 3330 |
| LmnI | GCTCC | 2 cut(s) | 121, 146 |
| Lsp1109I | GCAGC | 8 cut(s) | 88, 626, 1143, 1375, 2142, 2264, 3360, 3428 |
| MabI | ACCWGGT | 1 cut(s) | 3453 |
| MaeI | CTAG | 6 cut(s) | 1541, 1608, 1973, 2471, 2666, 3251 |
| MaeII | ACGT | 5 cut(s) | 706, 1699, 2555, 2575, 2654 |
| MfeI | CAATTG | 7 cut(s) | 366, 476, 843, 867, 1293, 2376, 2983 |
| MflI | RGATCY | 2 cut(s) | 505, 1465 |
| MhlI | GDGCHC | 1 cut(s) | 2673 |
| MlyI | GAGTC | 6 cut(s) | 755, 1685, 2016, 3510, 3551, 3585 |
| MmeI | TCCRAC | 8 cut(s) | 69, 718, 1071, 1977, 2103, 2149, 2576, 2969 |
| Mph1103I | ATGCAT | 2 cut(s) | 1459, 1635 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1250, 1482, 1665 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1722, 2676 |
| MspCI | CTTAAG | 2 cut(s) | 767, 2219 |
| MspI | CCGG | 4 cut(s) | 92, 488, 982, 2858 |
| MspR9I | CCNGG | 5 cut(s) | 1019, 1926, 2859, 3455, 3494 |
| MunI | CAATTG | 7 cut(s) | 366, 476, 843, 867, 1293, 2376, 2983 |
| Mva1269I | GAATGC | 3 cut(s) | 1252, 2451, 3089 |
| MvaI | CCWGG | 4 cut(s) | 1019, 1926, 3455, 3494 |
| MvnI | CGCG | 1 cut(s) | 753 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 82, 85, 831, 1639, 1701, 1987, 2792, 3256 |
| NciI | CCSGG | 1 cut(s) | 2859 |
| NcoI | CCATGG | 1 cut(s) | 928 |
| NlaIV | GGNNCC | 7 cut(s) | 142, 507, 524, 980, 1913, 2856, 3429 |
| NmeAIII | GCCGAG | 1 cut(s) | 81 |
| NmuCI | GTSAC | 6 cut(s) | 1677, 2615, 2621, 2716, 2999, 3289 |
| NsiI | ATGCAT | 2 cut(s) | 1459, 1635 |
| NspI | RCATGY | 3 cut(s) | 1388, 1500, 1571 |
| NspV | TTCGAA | 1 cut(s) | 2435 |
| PaeI | GCATGC | 1 cut(s) | 1388 |
| PagI | TCATGA | 2 cut(s) | 1717, 2455 |
| PciSI | GCTCTTC | 1 cut(s) | 3330 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 2005, 3377 |
| PctI | GAATGC | 3 cut(s) | 1252, 2451, 3089 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1250, 1482, 1665 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2988 |
| PinAI | ACCGGT | 1 cut(s) | 91 |
| PkrI | GCNGC | 9 cut(s) | 78, 87, 616, 1133, 1390, 2157, 2279, 3375, 3443 |
| PleI | GAGTC | 6 cut(s) | 754, 1684, 2016, 3510, 3551, 3585 |
| PpsI | GAGTC | 6 cut(s) | 754, 1684, 2016, 3510, 3551, 3585 |
| PshBI | ATTAAT | 2 cut(s) | 300, 1863 |
| PsiI | TTATAA | 2 cut(s) | 1856, 3420 |
| Psp1406I | AACGTT | 1 cut(s) | 2654 |
| Psp6I | CCWGG | 4 cut(s) | 1017, 1924, 3453, 3492 |
| PspFI | CCCAGC | 1 cut(s) | 1933 |
| PspGI | CCWGG | 4 cut(s) | 1017, 1924, 3453, 3492 |
| PspN4I | GGNNCC | 7 cut(s) | 142, 507, 524, 980, 1913, 2856, 3429 |
| PspPI | GGNCC | 6 cut(s) | 94, 935, 979, 1594, 3223, 3581 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 589, 621 |
| PstNI | CAGNNNCTG | 3 cut(s) | 82, 1691, 3499 |
| PsuI | RGATCY | 2 cut(s) | 505, 1465 |
| RsaI | GTAC | 4 cut(s) | 134, 519, 1581, 2140 |
| RsaNI | GTAC | 4 cut(s) | 133, 518, 1580, 2139 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1722, 2676 |
| SapI | GCTCTTC | 1 cut(s) | 3330 |
| SatI | GCNGC | 9 cut(s) | 77, 86, 615, 1132, 1389, 2156, 2278, 3374, 3442 |
| Sau96I | GGNCC | 6 cut(s) | 94, 935, 979, 1594, 3223, 3581 |
| ScaI | AGTACT | 1 cut(s) | 1581 |
| SchI | GAGTC | 6 cut(s) | 755, 1685, 2016, 3510, 3551, 3585 |
| ScrFI | CCNGG | 5 cut(s) | 1019, 1926, 2859, 3455, 3494 |
| SduI | GDGCHC | 1 cut(s) | 2673 |
| SexAI | ACCWGGT | 1 cut(s) | 3453 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SfuI | TTCGAA | 1 cut(s) | 2435 |
| SinI | GGWCC | 3 cut(s) | 94, 979, 3581 |
| SmiI | ATTTAAAT | 2 cut(s) | 717, 2130 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1722, 2676 |
| SmlI | CTYRAG | 7 cut(s) | 767, 1810, 2024, 2219, 2288, 3568, 3593 |
| SmoI | CTYRAG | 7 cut(s) | 767, 1810, 2024, 2219, 2288, 3568, 3593 |
| SpeI | ACTAGT | 2 cut(s) | 1607, 1972 |
| SphI | GCATGC | 1 cut(s) | 1388 |
| SsiI | CCGC | 6 cut(s) | 86, 751, 825, 1683, 2784, 3444 |
| SspI | AATATT | 3 cut(s) | 1943, 2263, 2695 |
| SspMI | CTAG | 6 cut(s) | 1541, 1608, 1973, 2471, 2666, 3251 |
| StyD4I | CCNGG | 5 cut(s) | 1017, 1924, 2857, 3453, 3492 |
| StyI | CCWWGG | 2 cut(s) | 928, 1203 |
| SwaI | ATTTAAAT | 2 cut(s) | 717, 2130 |
| TaaI | ACNGT | 9 cut(s) | 542, 1997, 2537, 2621, 2627, 2997, 3168, 3381, 3585 |
| TaiI | ACGT | 5 cut(s) | 709, 1702, 2558, 2578, 2657 |
| TaqI | TCGA | 5 cut(s) | 38, 1488, 2435, 3264, 3391 |
| TaqII | GACCGA | 1 cut(s) | 1013 |
| TatI | WGTACW | 2 cut(s) | 1579, 2138 |
| TauI | GCSGC | 1 cut(s) | 88 |
| TscAI | CASTG | 2 cut(s) | 3504, 3531 |
| TseFI | GTSAC | 6 cut(s) | 1677, 2615, 2621, 2716, 2999, 3289 |
| TseI | GCWGC | 8 cut(s) | 76, 614, 1131, 1388, 2155, 2277, 3373, 3441 |
| Tsp45I | GTSAC | 6 cut(s) | 1677, 2615, 2621, 2716, 2999, 3289 |
| TspGWI | ACGGA | 6 cut(s) | 133, 182, 623, 1458, 3336, 3404 |
| TspRI | CASTG | 2 cut(s) | 3504, 3531 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2988 |
| Vha464I | CTTAAG | 2 cut(s) | 767, 2219 |
| VpaK11BI | GGWCC | 3 cut(s) | 94, 979, 3581 |
| VspI | ATTAAT | 2 cut(s) | 300, 1863 |
| XceI | RCATGY | 3 cut(s) | 1388, 1500, 1571 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1250, 1482, 1665 |
| XspI | CTAG | 6 cut(s) | 1541, 1608, 1973, 2471, 2666, 3251 |
| ZrmI | AGTACT | 1 cut(s) | 1581 |
| Zsp2I | ATGCAT | 2 cut(s) | 1459, 1635 |