TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 68 - 136 | 2.1e-20 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 433 |
| AciI | CCGC | 1 cut(s) | 549 |
| AclWI | GGATC | 3 cut(s) | 85, 188, 201 |
| AcsI | RAATTY | 5 cut(s) | 523, 579, 688, 761, 816 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 643 |
| AflIII | ACRYGT | 1 cut(s) | 720 |
| AgsI | TTSAA | 6 cut(s) | 158, 544, 568, 578, 760, 811 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 658 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 649, 681 |
| AluBI | AGCT | 5 cut(s) | 62, 164, 252, 276, 555 |
| AluI | AGCT | 5 cut(s) | 62, 164, 252, 276, 555 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 3 cut(s) | 85, 188, 201 |
| AoxI | GGCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 1 cut(s) | 715 |
| ApoI | RAATTY | 5 cut(s) | 523, 579, 688, 761, 816 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 393 |
| AspS9I | GGNCC | 1 cut(s) | 646 |
| AsuHPI | GGTGA | 1 cut(s) | 623 |
| AvaII | GGWCC | 1 cut(s) | 646 |
| BamHI | GGATCC | 1 cut(s) | 193 |
| BbsI | GAAGAC | 1 cut(s) | 381 |
| BbvI | GCAGC | 1 cut(s) | 702 |
| BccI | CCATC | 1 cut(s) | 844 |
| BceAI | ACGGC | 1 cut(s) | 562 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BisI | GCNGC | 1 cut(s) | 716 |
| BlsI | GCNGC | 1 cut(s) | 717 |
| Bme18I | GGWCC | 1 cut(s) | 646 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 1 cut(s) | 646 |
| BmiI | GGNNCC | 2 cut(s) | 195, 647 |
| BmsI | GCATC | 3 cut(s) | 106, 348, 591 |
| BoxI | GACNNNNGTC | 1 cut(s) | 403 |
| BpiI | GAAGAC | 1 cut(s) | 381 |
| BpuEI | CTTGAG | 1 cut(s) | 488 |
| Bsa29I | ATCGAT | 1 cut(s) | 848 |
| BsaJI | CCNNGG | 1 cut(s) | 698 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 643 |
| Bse1I | ACTGG | 2 cut(s) | 637, 659 |
| BseCI | ATCGAT | 1 cut(s) | 848 |
| BseDI | CCNNGG | 1 cut(s) | 698 |
| BseGI | GGATG | 6 cut(s) | 10, 109, 363, 457, 606, 663 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 643 |
| BseNI | ACTGG | 2 cut(s) | 637, 659 |
| BseXI | GCAGC | 1 cut(s) | 702 |
| BsgI | GTGCAG | 1 cut(s) | 701 |
| BshFI | GGCC | 1 cut(s) | 323 |
| BshVI | ATCGAT | 1 cut(s) | 848 |
| BslFI | GGGAC | 2 cut(s) | 391, 796 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 643 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsmFI | GGGAC | 2 cut(s) | 391, 796 |
| BsnI | GGCC | 1 cut(s) | 323 |
| Bsp143I | GATC | 4 cut(s) | 16, 77, 82, 193 |
| BspACI | CCGC | 1 cut(s) | 549 |
| BspANI | GGCC | 1 cut(s) | 323 |
| BspDI | ATCGAT | 1 cut(s) | 848 |
| BspLI | GGNNCC | 2 cut(s) | 195, 647 |
| BspPI | GGATC | 3 cut(s) | 85, 188, 201 |
| BsrI | ACTGG | 2 cut(s) | 637, 659 |
| BssECI | CCNNGG | 1 cut(s) | 698 |
| BssMI | GATC | 4 cut(s) | 16, 77, 82, 193 |
| Bst4CI | ACNGT | 1 cut(s) | 438 |
| BstF5I | GGATG | 6 cut(s) | 10, 109, 363, 457, 606, 663 |
| BstKTI | GATC | 4 cut(s) | 19, 80, 85, 196 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 4 cut(s) | 16, 77, 82, 193 |
| BstNSI | RCATGY | 2 cut(s) | 228, 724 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 403 |
| BstV1I | GCAGC | 1 cut(s) | 702 |
| BstV2I | GAAGAC | 1 cut(s) | 381 |
| BstX2I | RGATCY | 2 cut(s) | 82, 193 |
| BstYI | RGATCY | 2 cut(s) | 82, 193 |
| Bsu15I | ATCGAT | 1 cut(s) | 848 |
| BsuRI | GGCC | 1 cut(s) | 323 |
| BsuTUI | ATCGAT | 1 cut(s) | 848 |
| BtsCI | GGATG | 6 cut(s) | 10, 109, 363, 457, 606, 663 |
| Cfr13I | GGNCC | 1 cut(s) | 646 |
| ClaI | ATCGAT | 1 cut(s) | 848 |
| CviAII | CATG | 6 cut(s) | 225, 313, 362, 379, 721, 745 |
| CviJI | RGCY | 9 cut(s) | 62, 164, 252, 276, 323, 442, 500, 555, 799 |
| CviKI_1 | RGCY | 9 cut(s) | 62, 164, 252, 276, 323, 442, 500, 555, 799 |
| DpnI | GATC | 4 cut(s) | 18, 79, 84, 195 |
| DpnII | GATC | 4 cut(s) | 16, 77, 82, 193 |
| DraI | TTTAAA | 3 cut(s) | 24, 235, 586 |
| DriI | GACNNNNNGTC | 1 cut(s) | 658 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 658 |
| EciI | GGCGGA | 1 cut(s) | 564 |
| Eco147I | AGGCCT | 1 cut(s) | 323 |
| Eco32I | GATATC | 1 cut(s) | 140 |
| Eco47I | GGWCC | 1 cut(s) | 646 |
| EcoO109I | RGGNCCY | 1 cut(s) | 646 |
| EcoRI | GAATTC | 2 cut(s) | 523, 816 |
| EcoRV | GATATC | 1 cut(s) | 140 |
| EcoT22I | ATGCAT | 2 cut(s) | 121, 363 |
| FaeI | CATG | 6 cut(s) | 228, 316, 365, 382, 724, 748 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 198, 230, 588, 620 |
| FaqI | GGGAC | 2 cut(s) | 391, 796 |
| FatI | CATG | 6 cut(s) | 224, 312, 361, 378, 720, 744 |
| FblI | GTMKAC | 1 cut(s) | 433 |
| Fnu4HI | GCNGC | 1 cut(s) | 716 |
| FokI | GGATG | 6 cut(s) | 17, 116, 370, 464, 613, 670 |
| Fsp4HI | GCNGC | 1 cut(s) | 716 |
| GluI | GCNGC | 1 cut(s) | 716 |
| HaeIII | GGCC | 1 cut(s) | 323 |
| Hin1II | CATG | 6 cut(s) | 228, 316, 365, 382, 724, 748 |
| HindIII | AAGCTT | 1 cut(s) | 553 |
| HinfI | GANTC | 3 cut(s) | 52, 154, 404 |
| HphI | GGTGA | 1 cut(s) | 623 |
| Hpy166II | GTNNAC | 2 cut(s) | 434, 843 |
| Hpy188I | TCNGA | 3 cut(s) | 82, 699, 822 |
| Hpy188III | TCNNGA | 2 cut(s) | 467, 631 |
| Hpy8I | GTNNAC | 2 cut(s) | 434, 843 |
| HpyAV | CCTTC | 2 cut(s) | 313, 590 |
| HpyCH4III | ACNGT | 1 cut(s) | 438 |
| HpyCH4IV | ACGT | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 5 cut(s) | 119, 224, 361, 718, 755 |
| HpySE526I | ACGT | 1 cut(s) | 37 |
| Hsp92II | CATG | 6 cut(s) | 228, 316, 365, 382, 724, 748 |
| Kzo9I | GATC | 4 cut(s) | 16, 77, 82, 193 |
| LpnPI | CCDG | 5 cut(s) | 161, 423, 465, 640, 650 |
| Lsp1109I | GCAGC | 1 cut(s) | 702 |
| LweI | GCATC | 3 cut(s) | 106, 348, 591 |
| MaeII | ACGT | 1 cut(s) | 37 |
| MaeIII | GTNAC | 3 cut(s) | 176, 239, 278 |
| MalI | GATC | 4 cut(s) | 18, 79, 84, 195 |
| MboI | GATC | 4 cut(s) | 16, 77, 82, 193 |
| MboII | GAAGA | 3 cut(s) | 206, 386, 566 |
| MfeI | CAATTG | 1 cut(s) | 777 |
| MflI | RGATCY | 2 cut(s) | 82, 193 |
| MluCI | AATT | 9 cut(s) | 333, 390, 492, 523, 579, 688, 761, 777, 816 |
| MlyI | GAGTC | 1 cut(s) | 413 |
| MmeI | TCCRAC | 1 cut(s) | 714 |
| Mph1103I | ATGCAT | 2 cut(s) | 121, 363 |
| MroXI | GAANNNNTTC | 1 cut(s) | 393 |
| MseI | TTAA | 6 cut(s) | 23, 234, 326, 495, 585, 693 |
| MslI | CAYNNNNRTG | 1 cut(s) | 356 |
| MunI | CAATTG | 1 cut(s) | 777 |
| NdeII | GATC | 4 cut(s) | 16, 77, 82, 193 |
| NlaIII | CATG | 6 cut(s) | 228, 316, 365, 382, 724, 748 |
| NlaIV | GGNNCC | 2 cut(s) | 195, 647 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NsiI | ATGCAT | 2 cut(s) | 121, 363 |
| NspI | RCATGY | 2 cut(s) | 228, 724 |
| PceI | AGGCCT | 1 cut(s) | 323 |
| PciI | ACATGT | 1 cut(s) | 720 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 683 |
| PdmI | GAANNNNTTC | 1 cut(s) | 393 |
| PfeI | GAWTC | 2 cut(s) | 52, 154 |
| PkrI | GCNGC | 1 cut(s) | 717 |
| PleI | GAGTC | 1 cut(s) | 412 |
| PpsI | GAGTC | 1 cut(s) | 412 |
| PpuMI | RGGWCCY | 1 cut(s) | 646 |
| PscI | ACATGT | 1 cut(s) | 720 |
| PshAI | GACNNNNGTC | 1 cut(s) | 403 |
| Psp5II | RGGWCCY | 1 cut(s) | 646 |
| PspN4I | GGNNCC | 2 cut(s) | 195, 647 |
| PspPI | GGNCC | 1 cut(s) | 646 |
| PspPPI | RGGWCCY | 1 cut(s) | 646 |
| PsuI | RGATCY | 2 cut(s) | 82, 193 |
| RseI | CAYNNNNRTG | 1 cut(s) | 356 |
| SaqAI | TTAA | 6 cut(s) | 23, 234, 326, 495, 585, 693 |
| SatI | GCNGC | 1 cut(s) | 716 |
| Sau3AI | GATC | 4 cut(s) | 16, 77, 82, 193 |
| Sau96I | GGNCC | 1 cut(s) | 646 |
| SchI | GAGTC | 1 cut(s) | 413 |
| SfaNI | GCATC | 3 cut(s) | 106, 348, 591 |
| SinI | GGWCC | 1 cut(s) | 646 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 356 |
| SmlI | CTYRAG | 1 cut(s) | 467 |
| SmoI | CTYRAG | 1 cut(s) | 467 |
| Sse9I | AATT | 9 cut(s) | 333, 390, 492, 523, 579, 688, 761, 777, 816 |
| SseBI | AGGCCT | 1 cut(s) | 323 |
| SsiI | CCGC | 1 cut(s) | 549 |
| StuI | AGGCCT | 1 cut(s) | 323 |
| TaaI | ACNGT | 1 cut(s) | 438 |
| TaiI | ACGT | 1 cut(s) | 40 |
| TaqI | TCGA | 4 cut(s) | 397, 591, 814, 848 |
| TaqII | GACCGA | 1 cut(s) | 716 |
| TasI | AATT | 9 cut(s) | 333, 390, 492, 523, 579, 688, 761, 777, 816 |
| TfiI | GAWTC | 2 cut(s) | 52, 154 |
| Tru1I | TTAA | 6 cut(s) | 23, 234, 326, 495, 585, 693 |
| Tru9I | TTAA | 6 cut(s) | 23, 234, 326, 495, 585, 693 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 1 cut(s) | 715 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 3 cut(s) | 206, 609, 657 |
| TspGWI | ACGGA | 2 cut(s) | 45, 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 646 |
| XapI | RAATTY | 5 cut(s) | 523, 579, 688, 761, 816 |
| XceI | RCATGY | 2 cut(s) | 228, 724 |
| XmiI | GTMKAC | 1 cut(s) | 433 |
| XmnI | GAANNNNTTC | 1 cut(s) | 393 |
| Zsp2I | ATGCAT | 2 cut(s) | 121, 363 |