TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 29 - 194 | 1.5e-50 | TIR domain |
| TIR_2 | PF13676 | 31 - 125 | 3.8e-14 | TIR domain |
| NB-ARC | PF00931 | 207 - 266 | 8.3e-08 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 311 - 377 | 1.9e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 548 - 618 | 1.7e-13 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 567 - 653 | 2.4e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 597 - 654 | 2.9e-06 | Leucine rich repeat |
| LRR_13 | PF23286 | 643 - 714 | 2.8e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2106 |
| AccI | GTMKAC | 1 cut(s) | 1162 |
| AccII | CGCG | 1 cut(s) | 1188 |
| AciI | CCGC | 3 cut(s) | 699, 1275, 1618 |
| AclWI | GGATC | 8 cut(s) | 247, 365, 662, 1643, 1671, 1743, 1881, 1928 |
| AcoI | YGGCCR | 2 cut(s) | 133, 1567 |
| AcsI | RAATTY | 3 cut(s) | 1305, 1420, 1482 |
| AcuI | CTGAAG | 2 cut(s) | 88, 1361 |
| AfaI | GTAC | 2 cut(s) | 143, 1836 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1369, 1565 |
| AflII | CTTAAG | 2 cut(s) | 641, 1970 |
| AhlI | ACTAGT | 1 cut(s) | 1405 |
| AjnI | CCWGG | 3 cut(s) | 399, 1731, 2016 |
| Alw26I | GTCTC | 4 cut(s) | 859, 1577, 1809, 2094 |
| AlwI | GGATC | 8 cut(s) | 247, 365, 662, 1643, 1671, 1743, 1881, 1928 |
| AoxI | GGCC | 6 cut(s) | 133, 397, 1050, 1567, 1789, 2074 |
| ApeKI | GCWGC | 5 cut(s) | 470, 485, 1615, 1890, 2033 |
| ApoI | RAATTY | 3 cut(s) | 1305, 1420, 1482 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 939, 1122, 1182, 2132 |
| AspS9I | GGNCC | 2 cut(s) | 397, 1372 |
| AsuHPI | GGTGA | 5 cut(s) | 122, 413, 419, 980, 1591 |
| AvaII | GGWCC | 1 cut(s) | 1372 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1818, 1851 |
| BalI | TGGCCA | 1 cut(s) | 135 |
| BauI | CACGAG | 1 cut(s) | 624 |
| BbsI | GAAGAC | 3 cut(s) | 639, 1110, 1521 |
| BbvCI | CCTCAGC | 1 cut(s) | 425 |
| BbvI | GCAGC | 5 cut(s) | 482, 497, 1602, 1877, 2020 |
| BccI | CCATC | 5 cut(s) | 404, 1463, 1760, 1846, 2045 |
| BceAI | ACGGC | 2 cut(s) | 1288, 1554 |
| BciT130I | CCWGG | 3 cut(s) | 401, 1733, 2018 |
| BciVI | GTATCC | 1 cut(s) | 1026 |
| BcoDI | GTCTC | 4 cut(s) | 859, 1577, 1809, 2094 |
| BcuI | ACTAGT | 1 cut(s) | 1405 |
| BfaI | CTAG | 2 cut(s) | 1406, 1946 |
| BfrI | CTTAAG | 2 cut(s) | 641, 1970 |
| BfuI | GTATCC | 1 cut(s) | 1026 |
| BglII | AGATCT | 3 cut(s) | 312, 808, 1948 |
| BisI | GCNGC | 5 cut(s) | 471, 486, 1616, 1891, 2034 |
| BlsI | GCNGC | 5 cut(s) | 472, 487, 1617, 1892, 2035 |
| Bme1390I | CCNGG | 3 cut(s) | 401, 1733, 2018 |
| Bme18I | GGWCC | 1 cut(s) | 1372 |
| BmgT120I | GGNCC | 2 cut(s) | 397, 1372 |
| BmiI | GGNNCC | 2 cut(s) | 19, 1373 |
| BmrFI | CCNGG | 3 cut(s) | 401, 1733, 2018 |
| BmsI | GCATC | 4 cut(s) | 287, 1077, 1239, 1854 |
| BpiI | GAAGAC | 3 cut(s) | 639, 1110, 1521 |
| BpmI | CTGGAG | 1 cut(s) | 1889 |
| Bpu10I | CCTNAGC | 1 cut(s) | 425 |
| BpuEI | CTTGAG | 3 cut(s) | 1217, 1387, 1706 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1878 |
| BsaJI | CCNNGG | 1 cut(s) | 13 |
| BsaWI | WCCGGW | 1 cut(s) | 2142 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1369, 1565 |
| Bse1I | ACTGG | 4 cut(s) | 136, 1602, 1792, 2077 |
| Bse3DI | GCAATG | 1 cut(s) | 914 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1878 |
| BseBI | CCWGG | 3 cut(s) | 401, 1733, 2018 |
| BseDI | CCNNGG | 1 cut(s) | 13 |
| BseGI | GGATG | 7 cut(s) | 304, 604, 838, 868, 1092, 1555, 1626 |
| BseJI | GATNNNNATC | 1 cut(s) | 1878 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1369, 1565 |
| BseMI | GCAATG | 1 cut(s) | 914 |
| BseMII | CTCAG | 4 cut(s) | 89, 439, 1785, 2070 |
| BseNI | ACTGG | 4 cut(s) | 136, 1602, 1792, 2077 |
| BseRI | GAGGAG | 2 cut(s) | 213, 2129 |
| BseXI | GCAGC | 5 cut(s) | 482, 497, 1602, 1877, 2020 |
| Bsh1236I | CGCG | 1 cut(s) | 1188 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1397 |
| BshFI | GGCC | 6 cut(s) | 135, 399, 1052, 1569, 1791, 2076 |
| BsiEI | CGRYCG | 1 cut(s) | 1397 |
| BsiSI | CCGG | 1 cut(s) | 2143 |
| BslFI | GGGAC | 1 cut(s) | 2007 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1369, 1565 |
| BsmAI | GTCTC | 4 cut(s) | 859, 1577, 1809, 2094 |
| BsmBI | CGTCTC | 1 cut(s) | 1577 |
| BsmFI | GGGAC | 1 cut(s) | 2007 |
| BsnI | GGCC | 6 cut(s) | 135, 399, 1052, 1569, 1791, 2076 |
| Bsp1407I | TGTACA | 1 cut(s) | 141 |
| Bsp68I | TCGCGA | 1 cut(s) | 1188 |
| BspACI | CCGC | 3 cut(s) | 699, 1275, 1618 |
| BspANI | GGCC | 6 cut(s) | 135, 399, 1052, 1569, 1791, 2076 |
| BspCNI | CTCAG | 4 cut(s) | 90, 438, 1784, 2069 |
| BspFNI | CGCG | 1 cut(s) | 1188 |
| BspLI | GGNNCC | 2 cut(s) | 19, 1373 |
| BspPI | GGATC | 8 cut(s) | 247, 365, 662, 1643, 1671, 1743, 1881, 1928 |
| BspTI | CTTAAG | 2 cut(s) | 641, 1970 |
| BsrDI | GCAATG | 1 cut(s) | 914 |
| BsrGI | TGTACA | 1 cut(s) | 141 |
| BsrI | ACTGG | 4 cut(s) | 136, 1602, 1792, 2077 |
| BssECI | CCNNGG | 1 cut(s) | 13 |
| BssSI | CACGAG | 1 cut(s) | 624 |
| Bst2BI | CACGAG | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 3 cut(s) | 401, 1733, 2018 |
| Bst4CI | ACNGT | 3 cut(s) | 1167, 1466, 2102 |
| Bst6I | CTCTTC | 2 cut(s) | 28, 64 |
| BstAFI | CTTAAG | 2 cut(s) | 641, 1970 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 275 |
| BstAUI | TGTACA | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 1 cut(s) | 1346 |
| BstDEI | CTNAG | 5 cut(s) | 8, 98, 425, 1771, 2056 |
| BstF5I | GGATG | 7 cut(s) | 304, 604, 838, 868, 1092, 1555, 1626 |
| BstFNI | CGCG | 1 cut(s) | 1188 |
| BstMAI | GTCTC | 4 cut(s) | 859, 1577, 1809, 2094 |
| BstMCI | CGRYCG | 1 cut(s) | 1397 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 1272 |
| BstNI | CCWGG | 3 cut(s) | 401, 1733, 2018 |
| BstNSI | RCATGY | 2 cut(s) | 957, 995 |
| BstSCI | CCNGG | 3 cut(s) | 399, 1731, 2016 |
| BstUI | CGCG | 1 cut(s) | 1188 |
| BstV1I | GCAGC | 5 cut(s) | 482, 497, 1602, 1877, 2020 |
| BstV2I | GAAGAC | 3 cut(s) | 639, 1110, 1521 |
| BstX2I | RGATCY | 7 cut(s) | 312, 370, 808, 1663, 1735, 1873, 1948 |
| BstYI | RGATCY | 7 cut(s) | 312, 370, 808, 1663, 1735, 1873, 1948 |
| BsuI | GTATCC | 1 cut(s) | 1026 |
| BsuRI | GGCC | 6 cut(s) | 135, 399, 1052, 1569, 1791, 2076 |
| BtsCI | GGATG | 7 cut(s) | 304, 604, 838, 868, 1092, 1555, 1626 |
| BtsIMutI | CAGTG | 3 cut(s) | 129, 1785, 2070 |
| BtuMI | TCGCGA | 1 cut(s) | 1188 |
| Cac8I | GCNNGC | 1 cut(s) | 1346 |
| Cfr13I | GGNCC | 2 cut(s) | 397, 1372 |
| Csp6I | GTAC | 2 cut(s) | 142, 1835 |
| CviAII | CATG | 9 cut(s) | 524, 676, 797, 954, 992, 1091, 1108, 1714, 1999 |
| CviQI | GTAC | 2 cut(s) | 142, 1835 |
| DdeI | CTNAG | 5 cut(s) | 8, 98, 425, 1771, 2056 |
| DraI | TTTAAA | 1 cut(s) | 964 |
| EaeI | YGGCCR | 2 cut(s) | 133, 1567 |
| Eam1104I | CTCTTC | 2 cut(s) | 28, 64 |
| EarI | CTCTTC | 2 cut(s) | 28, 64 |
| EciI | GGCGGA | 2 cut(s) | 714, 1290 |
| Eco147I | AGGCCT | 1 cut(s) | 1052 |
| Eco32I | GATATC | 1 cut(s) | 561 |
| Eco47I | GGWCC | 1 cut(s) | 1372 |
| Eco57I | CTGAAG | 2 cut(s) | 88, 1361 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1372 |
| EcoRI | GAATTC | 1 cut(s) | 1482 |
| EcoRII | CCWGG | 3 cut(s) | 399, 1731, 2016 |
| EcoRV | GATATC | 1 cut(s) | 561 |
| EcoT22I | ATGCAT | 2 cut(s) | 280, 1092 |
| Esp3I | CGTCTC | 1 cut(s) | 1577 |
| FaeI | CATG | 9 cut(s) | 527, 679, 800, 957, 995, 1094, 1111, 1717, 2002 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 278, 310, 624, 656, 927, 959, 1250, 1282 |
| FaqI | GGGAC | 1 cut(s) | 2007 |
| FatI | CATG | 9 cut(s) | 523, 675, 796, 953, 991, 1090, 1107, 1713, 1998 |
| FblI | GTMKAC | 1 cut(s) | 1162 |
| Fnu4HI | GCNGC | 5 cut(s) | 471, 486, 1616, 1891, 2034 |
| FokI | GGATG | 7 cut(s) | 311, 591, 845, 855, 1099, 1542, 1633 |
| Fsp4HI | GCNGC | 5 cut(s) | 471, 486, 1616, 1891, 2034 |
| FspBI | CTAG | 2 cut(s) | 1406, 1946 |
| GluI | GCNGC | 5 cut(s) | 471, 486, 1616, 1891, 2034 |
| GsuI | CTGGAG | 1 cut(s) | 1889 |
| HaeIII | GGCC | 6 cut(s) | 135, 399, 1052, 1569, 1791, 2076 |
| HapII | CCGG | 1 cut(s) | 2143 |
| Hin1II | CATG | 9 cut(s) | 527, 679, 800, 957, 995, 1094, 1111, 1717, 2002 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HindIII | AAGCTT | 5 cut(s) | 1279, 1328, 1507, 1682, 1967 |
| HinfI | GANTC | 6 cut(s) | 329, 620, 883, 1726, 2011, 2128 |
| HpaI | GTTAAC | 1 cut(s) | 157 |
| HpaII | CCGG | 1 cut(s) | 2143 |
| HphI | GGTGA | 5 cut(s) | 122, 413, 419, 980, 1591 |
| Hpy166II | GTNNAC | 5 cut(s) | 81, 157, 349, 733, 1163 |
| Hpy188I | TCNGA | 7 cut(s) | 17, 99, 107, 379, 927, 1462, 2127 |
| Hpy8I | GTNNAC | 5 cut(s) | 81, 157, 349, 733, 1163 |
| Hpy99I | CGWCG | 1 cut(s) | 379 |
| HpyAV | CCTTC | 8 cut(s) | 184, 230, 388, 445, 460, 1385, 1420, 1569 |
| HpyCH4III | ACNGT | 3 cut(s) | 1167, 1466, 2102 |
| HpyCH4IV | ACGT | 1 cut(s) | 1864 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 1272 |
| HpyF3I | CTNAG | 5 cut(s) | 8, 98, 425, 1771, 2056 |
| HpySE526I | ACGT | 1 cut(s) | 1864 |
| Hsp92II | CATG | 9 cut(s) | 527, 679, 800, 957, 995, 1094, 1111, 1717, 2002 |
| KspAI | GTTAAC | 1 cut(s) | 157 |
| LmnI | GCTCC | 2 cut(s) | 17, 217 |
| Lsp1109I | GCAGC | 5 cut(s) | 482, 497, 1602, 1877, 2020 |
| LweI | GCATC | 4 cut(s) | 287, 1077, 1239, 1854 |
| MaeI | CTAG | 2 cut(s) | 1406, 1946 |
| MaeII | ACGT | 1 cut(s) | 1864 |
| MaeIII | GTNAC | 5 cut(s) | 905, 1007, 1761, 1903, 2046 |
| MflI | RGATCY | 7 cut(s) | 312, 370, 808, 1663, 1735, 1873, 1948 |
| MlsI | TGGCCA | 1 cut(s) | 135 |
| MluNI | TGGCCA | 1 cut(s) | 135 |
| MmeI | TCCRAC | 7 cut(s) | 357, 443, 592, 1440, 1724, 1756, 2041 |
| Mox20I | TGGCCA | 1 cut(s) | 135 |
| Mph1103I | ATGCAT | 2 cut(s) | 280, 1092 |
| MroXI | GAANNNNTTC | 4 cut(s) | 939, 1122, 1182, 2132 |
| MscI | TGGCCA | 1 cut(s) | 135 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1085 |
| Msp20I | TGGCCA | 1 cut(s) | 135 |
| MspCI | CTTAAG | 2 cut(s) | 641, 1970 |
| MspI | CCGG | 1 cut(s) | 2143 |
| MspR9I | CCNGG | 3 cut(s) | 401, 1733, 2018 |
| MvaI | CCWGG | 3 cut(s) | 401, 1733, 2018 |
| MvnI | CGCG | 1 cut(s) | 1188 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 1272 |
| NlaIII | CATG | 9 cut(s) | 527, 679, 800, 957, 995, 1094, 1111, 1717, 2002 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 1373 |
| NmuCI | GTSAC | 1 cut(s) | 1007 |
| NruI | TCGCGA | 1 cut(s) | 1188 |
| NsiI | ATGCAT | 2 cut(s) | 280, 1092 |
| NspI | RCATGY | 2 cut(s) | 957, 995 |
| PceI | AGGCCT | 1 cut(s) | 1052 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1581 |
| PdmI | GAANNNNTTC | 4 cut(s) | 939, 1122, 1182, 2132 |
| PfeI | GAWTC | 6 cut(s) | 329, 620, 883, 1726, 2011, 2128 |
| PkrI | GCNGC | 5 cut(s) | 472, 487, 1617, 1892, 2035 |
| Ple19I | CGATCG | 1 cut(s) | 1397 |
| PpuMI | RGGWCCY | 1 cut(s) | 1372 |
| PsiI | TTATAA | 1 cut(s) | 2106 |
| Psp5II | RGGWCCY | 1 cut(s) | 1372 |
| Psp6I | CCWGG | 3 cut(s) | 399, 1731, 2016 |
| PspGI | CCWGG | 3 cut(s) | 399, 1731, 2016 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 1373 |
| PspPI | GGNCC | 2 cut(s) | 397, 1372 |
| PspPPI | RGGWCCY | 1 cut(s) | 1372 |
| PsuI | RGATCY | 7 cut(s) | 312, 370, 808, 1663, 1735, 1873, 1948 |
| PvuI | CGATCG | 1 cut(s) | 1397 |
| RruI | TCGCGA | 1 cut(s) | 1188 |
| RsaI | GTAC | 2 cut(s) | 143, 1836 |
| RsaNI | GTAC | 2 cut(s) | 142, 1835 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1085 |
| SatI | GCNGC | 5 cut(s) | 471, 486, 1616, 1891, 2034 |
| Sau96I | GGNCC | 2 cut(s) | 397, 1372 |
| ScrFI | CCNGG | 3 cut(s) | 401, 1733, 2018 |
| SfaNI | GCATC | 4 cut(s) | 287, 1077, 1239, 1854 |
| SinI | GGWCC | 1 cut(s) | 1372 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1085 |
| SmlI | CTYRAG | 5 cut(s) | 641, 1196, 1366, 1685, 1970 |
| SmoI | CTYRAG | 5 cut(s) | 641, 1196, 1366, 1685, 1970 |
| SpeI | ACTAGT | 1 cut(s) | 1405 |
| SseBI | AGGCCT | 1 cut(s) | 1052 |
| SsiI | CCGC | 3 cut(s) | 699, 1275, 1618 |
| SspMI | CTAG | 2 cut(s) | 1406, 1946 |
| StuI | AGGCCT | 1 cut(s) | 1052 |
| StyD4I | CCNGG | 3 cut(s) | 399, 1731, 2016 |
| TaaI | ACNGT | 3 cut(s) | 1167, 1466, 2102 |
| TaiI | ACGT | 1 cut(s) | 1867 |
| TaqI | TCGA | 5 cut(s) | 225, 512, 1233, 1575, 1841 |
| TatI | WGTACW | 1 cut(s) | 141 |
| TfiI | GAWTC | 6 cut(s) | 329, 620, 883, 1726, 2011, 2128 |
| TscAI | CASTG | 3 cut(s) | 136, 1792, 2077 |
| TseFI | GTSAC | 1 cut(s) | 1007 |
| TseI | GCWGC | 5 cut(s) | 470, 485, 1615, 1890, 2033 |
| Tsp45I | GTSAC | 1 cut(s) | 1007 |
| TspGWI | ACGGA | 3 cut(s) | 363, 1229, 1307 |
| TspRI | CASTG | 3 cut(s) | 136, 1792, 2077 |
| Vha464I | CTTAAG | 2 cut(s) | 641, 1970 |
| VpaK11BI | GGWCC | 1 cut(s) | 1372 |
| XapI | RAATTY | 3 cut(s) | 1305, 1420, 1482 |
| XbaI | TCTAGA | 1 cut(s) | 1945 |
| XceI | RCATGY | 2 cut(s) | 957, 995 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 407 |
| XmiI | GTMKAC | 1 cut(s) | 1162 |
| XmnI | GAANNNNTTC | 4 cut(s) | 939, 1122, 1182, 2132 |
| XspI | CTAG | 2 cut(s) | 1406, 1946 |
| Zsp2I | ATGCAT | 2 cut(s) | 280, 1092 |