TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_13 | PF23286 | 115 - 189 | 6.7e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 131 - 202 | 2.8e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 176 - 347 | 2.9e-19 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 201 - 260 | 1.4e-06 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1214 |
| AccIII | TCCGGA | 1 cut(s) | 1036 |
| AciI | CCGC | 6 cut(s) | 319, 1133, 1207, 1212, 1214, 1266 |
| AclWI | GGATC | 3 cut(s) | 411, 693, 1089 |
| AcoI | YGGCCR | 1 cut(s) | 242 |
| AcsI | RAATTY | 8 cut(s) | 37, 248, 359, 582, 742, 804, 980, 1032 |
| AcyI | GRCGYC | 1 cut(s) | 1136 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1213, 1272 |
| AflIII | ACRYGT | 1 cut(s) | 847 |
| AgeI | ACCGGT | 1 cut(s) | 1282 |
| AgsI | TTSAA | 9 cut(s) | 121, 138, 472, 659, 677, 811, 1009, 1151, 1334 |
| AhlI | ACTAGT | 2 cut(s) | 778, 1319 |
| AjnI | CCWGG | 1 cut(s) | 1067 |
| AleI | CACNNNNGTG | 1 cut(s) | 334 |
| AluBI | AGCT | 8 cut(s) | 20, 100, 132, 352, 844, 1121, 1330, 1357 |
| AluI | AGCT | 8 cut(s) | 20, 100, 132, 352, 844, 1121, 1330, 1357 |
| Alw26I | GTCTC | 2 cut(s) | 601, 1015 |
| AlwI | GGATC | 3 cut(s) | 411, 693, 1089 |
| Aor13HI | TCCGGA | 1 cut(s) | 1036 |
| AoxI | GGCC | 2 cut(s) | 242, 1154 |
| ApeKI | GCWGC | 1 cut(s) | 723 |
| ApoI | RAATTY | 8 cut(s) | 37, 248, 359, 582, 742, 804, 980, 1032 |
| AsiGI | ACCGGT | 1 cut(s) | 1282 |
| AspS9I | GGNCC | 2 cut(s) | 1154, 1288 |
| AsuC2I | CCSGG | 1 cut(s) | 1270 |
| AsuHPI | GGTGA | 3 cut(s) | 776, 967, 1218 |
| AvaII | GGWCC | 1 cut(s) | 1288 |
| BalI | TGGCCA | 1 cut(s) | 244 |
| BbsI | GAAGAC | 3 cut(s) | 69, 953, 1176 |
| BbvI | GCAGC | 1 cut(s) | 735 |
| BccI | CCATC | 7 cut(s) | 42, 277, 545, 589, 812, 1231, 1314 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 263, 297 |
| BciT130I | CCWGG | 1 cut(s) | 1069 |
| BcnI | CCSGG | 1 cut(s) | 1270 |
| BcoDI | GTCTC | 2 cut(s) | 601, 1015 |
| BcuI | ACTAGT | 2 cut(s) | 778, 1319 |
| BfaI | CTAG | 3 cut(s) | 533, 779, 1320 |
| BisI | GCNGC | 4 cut(s) | 319, 724, 1134, 1266 |
| BlsI | GCNGC | 4 cut(s) | 320, 725, 1135, 1267 |
| Bme1390I | CCNGG | 2 cut(s) | 1069, 1270 |
| Bme18I | GGWCC | 1 cut(s) | 1288 |
| BmgT120I | GGNCC | 2 cut(s) | 1154, 1288 |
| BmiI | GGNNCC | 1 cut(s) | 1290 |
| BmrFI | CCNGG | 2 cut(s) | 1069, 1270 |
| BmsI | GCATC | 3 cut(s) | 102, 545, 857 |
| BpiI | GAAGAC | 3 cut(s) | 69, 953, 1176 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 36 |
| BpmI | CTGGAG | 2 cut(s) | 219, 1106 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 412, 625 |
| BpuMI | CCSGG | 1 cut(s) | 1270 |
| BsaAI | YACGTR | 1 cut(s) | 848 |
| BsaHI | GRCGYC | 1 cut(s) | 1136 |
| BsaJI | CCNNGG | 4 cut(s) | 1027, 1068, 1212, 1269 |
| BsaWI | WCCGGW | 2 cut(s) | 1036, 1282 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1213, 1272 |
| Bse118I | RCCGGY | 1 cut(s) | 1282 |
| Bse1I | ACTGG | 4 cut(s) | 67, 587, 1089, 1235 |
| BseAI | TCCGGA | 1 cut(s) | 1036 |
| BseBI | CCWGG | 1 cut(s) | 1069 |
| BseDI | CCNNGG | 4 cut(s) | 1027, 1068, 1212, 1269 |
| BseGI | GGATG | 7 cut(s) | 53, 93, 269, 556, 560, 652, 872 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1213, 1272 |
| BseMII | CTCAG | 1 cut(s) | 1344 |
| BseNI | ACTGG | 4 cut(s) | 67, 587, 1089, 1235 |
| BseRI | GAGGAG | 1 cut(s) | 1103 |
| BseXI | GCAGC | 1 cut(s) | 735 |
| BseYI | CCCAGC | 1 cut(s) | 912 |
| Bsh1236I | CGCG | 1 cut(s) | 1214 |
| BshFI | GGCC | 2 cut(s) | 244, 1156 |
| BshTI | ACCGGT | 1 cut(s) | 1282 |
| BsiSI | CCGG | 3 cut(s) | 1037, 1269, 1283 |
| BslFI | GGGAC | 2 cut(s) | 357, 1274 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1213, 1272 |
| BsmAI | GTCTC | 2 cut(s) | 601, 1015 |
| BsmFI | GGGAC | 2 cut(s) | 357, 1274 |
| BsmI | GAATGC | 3 cut(s) | 127, 433, 773 |
| BsnI | GGCC | 2 cut(s) | 244, 1156 |
| Bsp13I | TCCGGA | 1 cut(s) | 1036 |
| Bsp143I | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| BspACI | CCGC | 6 cut(s) | 319, 1133, 1207, 1212, 1214, 1266 |
| BspANI | GGCC | 2 cut(s) | 244, 1156 |
| BspCNI | CTCAG | 1 cut(s) | 1345 |
| BspEI | TCCGGA | 1 cut(s) | 1036 |
| BspFNI | CGCG | 1 cut(s) | 1214 |
| BspLI | GGNNCC | 1 cut(s) | 1290 |
| BspPI | GGATC | 3 cut(s) | 411, 693, 1089 |
| BsrFI | RCCGGY | 1 cut(s) | 1282 |
| BsrI | ACTGG | 4 cut(s) | 67, 587, 1089, 1235 |
| BssAI | RCCGGY | 1 cut(s) | 1282 |
| BssECI | CCNNGG | 4 cut(s) | 1027, 1068, 1212, 1269 |
| BssMI | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| BssNI | GRCGYC | 1 cut(s) | 1136 |
| Bst2UI | CCWGG | 1 cut(s) | 1069 |
| Bst4CI | ACNGT | 4 cut(s) | 336, 507, 831, 1013 |
| Bst6I | CTCTTC | 1 cut(s) | 372 |
| BstACI | GRCGYC | 1 cut(s) | 1136 |
| BstBAI | YACGTR | 1 cut(s) | 848 |
| BstC8I | GCNNGC | 2 cut(s) | 970, 1278 |
| BstDEI | CTNAG | 4 cut(s) | 152, 689, 1353, 1392 |
| BstDSI | CCRYGG | 1 cut(s) | 1212 |
| BstF5I | GGATG | 7 cut(s) | 53, 93, 269, 556, 560, 652, 872 |
| BstFNI | CGCG | 1 cut(s) | 1214 |
| BstKTI | GATC | 4 cut(s) | 406, 688, 760, 1097 |
| BstMAI | GTCTC | 2 cut(s) | 601, 1015 |
| BstMBI | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 241, 1363 |
| BstNI | CCWGG | 1 cut(s) | 1069 |
| BstSCI | CCNGG | 2 cut(s) | 1067, 1268 |
| BstUI | CGCG | 1 cut(s) | 1214 |
| BstV1I | GCAGC | 1 cut(s) | 735 |
| BstV2I | GAAGAC | 3 cut(s) | 69, 953, 1176 |
| BstX2I | RGATCY | 3 cut(s) | 403, 685, 1094 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1068 |
| BstYI | RGATCY | 3 cut(s) | 403, 685, 1094 |
| BsuRI | GGCC | 2 cut(s) | 244, 1156 |
| BtgI | CCRYGG | 1 cut(s) | 1212 |
| BtsCI | GGATG | 7 cut(s) | 53, 93, 269, 556, 560, 652, 872 |
| BtsI | GCAGTG | 2 cut(s) | 634, 1260 |
| BtsIMutI | CAGTG | 4 cut(s) | 634, 827, 1242, 1260 |
| Cac8I | GCNNGC | 2 cut(s) | 970, 1278 |
| Cfr10I | RCCGGY | 1 cut(s) | 1282 |
| Cfr13I | GGNCC | 2 cut(s) | 1154, 1288 |
| Cfr42I | CCGCGG | 1 cut(s) | 1215 |
| CseI | GACGC | 1 cut(s) | 1125 |
| CspAI | ACCGGT | 1 cut(s) | 1282 |
| CviAII | CATG | 5 cut(s) | 281, 720, 1115, 1170, 1294 |
| DdeI | CTNAG | 4 cut(s) | 152, 689, 1353, 1392 |
| DpnI | GATC | 4 cut(s) | 405, 687, 759, 1096 |
| DpnII | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| EaeI | YGGCCR | 1 cut(s) | 242 |
| Eam1104I | CTCTTC | 1 cut(s) | 372 |
| EarI | CTCTTC | 1 cut(s) | 372 |
| Eco47I | GGWCC | 1 cut(s) | 1288 |
| EcoRI | GAATTC | 1 cut(s) | 1032 |
| EcoRII | CCWGG | 1 cut(s) | 1067 |
| FaeI | CATG | 5 cut(s) | 284, 723, 1118, 1173, 1297 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1369 |
| FaqI | GGGAC | 2 cut(s) | 357, 1274 |
| FatI | CATG | 5 cut(s) | 280, 719, 1114, 1169, 1293 |
| Fnu4HI | GCNGC | 4 cut(s) | 319, 724, 1134, 1266 |
| FokI | GGATG | 7 cut(s) | 60, 80, 256, 563, 567, 659, 879 |
| Fsp4HI | GCNGC | 4 cut(s) | 319, 724, 1134, 1266 |
| FspBI | CTAG | 3 cut(s) | 533, 779, 1320 |
| GluI | GCNGC | 4 cut(s) | 319, 724, 1134, 1266 |
| GsaI | CCCAGC | 1 cut(s) | 916 |
| GsuI | CTGGAG | 2 cut(s) | 219, 1106 |
| HaeIII | GGCC | 2 cut(s) | 244, 1156 |
| HapII | CCGG | 3 cut(s) | 1037, 1269, 1283 |
| HgaI | GACGC | 1 cut(s) | 1125 |
| Hin1I | GRCGYC | 1 cut(s) | 1136 |
| Hin1II | CATG | 5 cut(s) | 284, 723, 1118, 1173, 1297 |
| HincII | GTYRAC | 1 cut(s) | 988 |
| HindII | GTYRAC | 1 cut(s) | 988 |
| HindIII | AAGCTT | 2 cut(s) | 130, 350 |
| HinfI | GANTC | 8 cut(s) | 148, 324, 538, 599, 650, 901, 1023, 1240 |
| HpaII | CCGG | 3 cut(s) | 1037, 1269, 1283 |
| HphI | GGTGA | 3 cut(s) | 776, 967, 1218 |
| Hpy166II | GTNNAC | 2 cut(s) | 988, 1325 |
| Hpy8I | GTNNAC | 2 cut(s) | 988, 1325 |
| Hpy99I | CGWCG | 2 cut(s) | 1141, 1168 |
| HpyAV | CCTTC | 1 cut(s) | 1145 |
| HpyCH4III | ACNGT | 4 cut(s) | 336, 507, 831, 1013 |
| HpyCH4IV | ACGT | 2 cut(s) | 346, 847 |
| HpyCH4V | TGCA | 9 cut(s) | 259, 284, 433, 526, 699, 723, 739, 870, 1017 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 241, 1363 |
| HpyF3I | CTNAG | 4 cut(s) | 152, 689, 1353, 1392 |
| HpySE526I | ACGT | 2 cut(s) | 346, 847 |
| Hsp92I | GRCGYC | 1 cut(s) | 1136 |
| Hsp92II | CATG | 5 cut(s) | 284, 723, 1118, 1173, 1297 |
| Kpn2I | TCCGGA | 1 cut(s) | 1036 |
| KspI | CCGCGG | 1 cut(s) | 1215 |
| Kzo9I | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| LmnI | GCTCC | 1 cut(s) | 1118 |
| Lsp1109I | GCAGC | 1 cut(s) | 735 |
| LweI | GCATC | 3 cut(s) | 102, 545, 857 |
| MaeI | CTAG | 3 cut(s) | 533, 779, 1320 |
| MaeII | ACGT | 2 cut(s) | 346, 847 |
| MaeIII | GTNAC | 2 cut(s) | 629, 831 |
| MalI | GATC | 4 cut(s) | 405, 687, 759, 1096 |
| MboI | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| MboII | GAAGA | 6 cut(s) | 74, 157, 389, 953, 1176, 1229 |
| MfeI | CAATTG | 2 cut(s) | 654, 1146 |
| MflI | RGATCY | 3 cut(s) | 403, 685, 1094 |
| MlsI | TGGCCA | 1 cut(s) | 244 |
| MluNI | TGGCCA | 1 cut(s) | 244 |
| MlyI | GAGTC | 3 cut(s) | 659, 895, 1017 |
| MmeI | TCCRAC | 1 cut(s) | 815 |
| Mox20I | TGGCCA | 1 cut(s) | 244 |
| MroI | TCCGGA | 1 cut(s) | 1036 |
| MscI | TGGCCA | 1 cut(s) | 244 |
| MseI | TTAA | 6 cut(s) | 87, 423, 591, 933, 1002, 1056 |
| MslI | CAYNNNNRTG | 1 cut(s) | 334 |
| Msp20I | TGGCCA | 1 cut(s) | 244 |
| MspA1I | CMGCKG | 2 cut(s) | 100, 1214 |
| MspI | CCGG | 3 cut(s) | 1037, 1269, 1283 |
| MspR9I | CCNGG | 2 cut(s) | 1069, 1270 |
| MunI | CAATTG | 2 cut(s) | 654, 1146 |
| Mva1269I | GAATGC | 3 cut(s) | 127, 433, 773 |
| MvaI | CCWGG | 1 cut(s) | 1069 |
| MvnI | CGCG | 1 cut(s) | 1214 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 241, 1363 |
| NciI | CCSGG | 1 cut(s) | 1270 |
| NdeII | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| NlaIII | CATG | 5 cut(s) | 284, 723, 1118, 1173, 1297 |
| NlaIV | GGNNCC | 1 cut(s) | 1290 |
| NmuCI | GTSAC | 2 cut(s) | 629, 831 |
| OliI | CACNNNNGTG | 1 cut(s) | 334 |
| PctI | GAATGC | 3 cut(s) | 127, 433, 773 |
| PfeI | GAWTC | 5 cut(s) | 148, 324, 538, 599, 1240 |
| PinAI | ACCGGT | 1 cut(s) | 1282 |
| PkrI | GCNGC | 4 cut(s) | 320, 725, 1135, 1267 |
| PleI | GAGTC | 3 cut(s) | 658, 895, 1017 |
| PpsI | GAGTC | 3 cut(s) | 658, 895, 1017 |
| Ppu21I | YACGTR | 1 cut(s) | 848 |
| Psp6I | CCWGG | 1 cut(s) | 1067 |
| PspFI | CCCAGC | 1 cut(s) | 912 |
| PspGI | CCWGG | 1 cut(s) | 1067 |
| PspN4I | GGNNCC | 1 cut(s) | 1290 |
| PspPI | GGNCC | 2 cut(s) | 1154, 1288 |
| PsuI | RGATCY | 3 cut(s) | 403, 685, 1094 |
| PvuII | CAGCTG | 1 cut(s) | 100 |
| RseI | CAYNNNNRTG | 1 cut(s) | 334 |
| SacII | CCGCGG | 1 cut(s) | 1215 |
| SaqAI | TTAA | 6 cut(s) | 87, 423, 591, 933, 1002, 1056 |
| SatI | GCNGC | 4 cut(s) | 319, 724, 1134, 1266 |
| Sau3AI | GATC | 4 cut(s) | 403, 685, 757, 1094 |
| Sau96I | GGNCC | 2 cut(s) | 1154, 1288 |
| SchI | GAGTC | 3 cut(s) | 659, 895, 1017 |
| ScrFI | CCNGG | 2 cut(s) | 1069, 1270 |
| SfaNI | GCATC | 3 cut(s) | 102, 545, 857 |
| Sfr303I | CCGCGG | 1 cut(s) | 1215 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1282 |
| SgrBI | CCGCGG | 1 cut(s) | 1215 |
| SinI | GGWCC | 1 cut(s) | 1288 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 334 |
| SmlI | CTYRAG | 3 cut(s) | 353, 391, 604 |
| SmoI | CTYRAG | 3 cut(s) | 353, 391, 604 |
| SpeI | ACTAGT | 2 cut(s) | 778, 1319 |
| SsiI | CCGC | 6 cut(s) | 319, 1133, 1207, 1212, 1214, 1266 |
| SspMI | CTAG | 3 cut(s) | 533, 779, 1320 |
| StyD4I | CCNGG | 2 cut(s) | 1067, 1268 |
| TaaI | ACNGT | 4 cut(s) | 336, 507, 831, 1013 |
| TaiI | ACGT | 2 cut(s) | 349, 850 |
| TaqI | TCGA | 1 cut(s) | 816 |
| TauI | GCSGC | 3 cut(s) | 321, 1136, 1268 |
| TfiI | GAWTC | 5 cut(s) | 148, 324, 538, 599, 1240 |
| Tru1I | TTAA | 6 cut(s) | 87, 423, 591, 933, 1002, 1056 |
| Tru9I | TTAA | 6 cut(s) | 87, 423, 591, 933, 1002, 1056 |
| TscAI | CASTG | 4 cut(s) | 634, 834, 1242, 1267 |
| TseFI | GTSAC | 2 cut(s) | 629, 831 |
| TseI | GCWGC | 1 cut(s) | 723 |
| Tsp45I | GTSAC | 2 cut(s) | 629, 831 |
| TspDTI | ATGAA | 3 cut(s) | 158, 201, 269 |
| TspGWI | ACGGA | 1 cut(s) | 1152 |
| TspRI | CASTG | 4 cut(s) | 634, 834, 1242, 1267 |
| VpaK11BI | GGWCC | 1 cut(s) | 1288 |
| XapI | RAATTY | 8 cut(s) | 37, 248, 359, 582, 742, 804, 980, 1032 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XspI | CTAG | 3 cut(s) | 533, 779, 1320 |