TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 181 | 5.6e-52 | TIR domain |
| TIR_2 | PF13676 | 17 - 112 | 4e-16 | TIR domain |
| NB-ARC | PF00931 | 199 - 367 | 4.5e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 434 - 502 | 4.8e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 685 - 792 | 1.2e-10 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 763 - 818 | 1.2e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 781 - 862 | 1.6e-17 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 850 - 907 | 5e-12 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 907 - 978 | 7.5e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 932 - 1119 | 2.4e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3930 |
| AatII | GACGTC | 1 cut(s) | 3370 |
| Acc36I | ACCTGC | 2 cut(s) | 1521, 3930 |
| AccB1I | GGYRCC | 1 cut(s) | 2937 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2342 |
| AccI | GTMKAC | 3 cut(s) | 1105, 2026, 2585 |
| AccII | CGCG | 1 cut(s) | 3375 |
| AciI | CCGC | 5 cut(s) | 79, 368, 2885, 3375, 3880 |
| AclI | AACGTT | 3 cut(s) | 1945, 2442, 2646 |
| AcoI | YGGCCR | 4 cut(s) | 564, 1614, 1775, 3763 |
| AcsI | RAATTY | 5 cut(s) | 757, 1254, 2119, 3206, 3612 |
| AcuI | CTGAAG | 2 cut(s) | 2075, 3659 |
| AcvI | CACGTG | 1 cut(s) | 1357 |
| AcyI | GRCGYC | 2 cut(s) | 3140, 3367 |
| AfaI | GTAC | 7 cut(s) | 309, 550, 572, 884, 1901, 2714, 4077 |
| AfeI | AGCGCT | 2 cut(s) | 109, 2974 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 249, 415, 1115, 2342, 2947, 3033, 3073, 3150, 3890 |
| AflII | CTTAAG | 1 cut(s) | 2321 |
| AflIII | ACRYGT | 2 cut(s) | 1354, 3827 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3139, 3430 |
| AhlI | ACTAGT | 1 cut(s) | 265 |
| AjiI | CACGTC | 6 cut(s) | 2424, 2493, 2628, 2697, 2766, 3427 |
| AjnI | CCWGG | 7 cut(s) | 1516, 1819, 2959, 3046, 3522, 3629, 3960 |
| AleI | CACNNNNGTG | 1 cut(s) | 3572 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 621, 653 |
| Alw21I | GWGCWC | 3 cut(s) | 600, 1410, 2139 |
| Alw26I | GTCTC | 5 cut(s) | 1431, 2042, 2375, 3115, 3249 |
| Alw44I | GTGCAC | 2 cut(s) | 596, 2135 |
| Ama87I | CYCGRG | 2 cut(s) | 278, 591 |
| Aor51HI | AGCGCT | 2 cut(s) | 109, 2974 |
| AoxI | GGCC | 8 cut(s) | 94, 467, 564, 1419, 1614, 1751, 1775, 3763 |
| ApaLI | GTGCAC | 2 cut(s) | 596, 2135 |
| ApeKI | GCWGC | 7 cut(s) | 105, 449, 1226, 1248, 1383, 2905, 4031 |
| ApoI | RAATTY | 5 cut(s) | 757, 1254, 2119, 3206, 3612 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 747, 798, 1311, 3000 |
| AspLEI | GCGC | 3 cut(s) | 110, 1712, 2975 |
| AspS9I | GGNCC | 4 cut(s) | 1420, 1647, 2302, 3916 |
| AsuC2I | CCSGG | 2 cut(s) | 410, 3363 |
| AsuHPI | GGTGA | 9 cut(s) | 16, 80, 121, 847, 1352, 2443, 2647, 3569, 3965 |
| AsuNHI | GCTAGC | 1 cut(s) | 3992 |
| AvaI | CYCGRG | 2 cut(s) | 278, 591 |
| AvaII | GGWCC | 3 cut(s) | 1647, 2302, 3916 |
| BaeGI | GKGCMC | 3 cut(s) | 600, 2139, 2942 |
| BalI | TGGCCA | 4 cut(s) | 566, 1616, 1777, 3765 |
| BamHI | GGATCC | 2 cut(s) | 3378, 3859 |
| BanI | GGYRCC | 1 cut(s) | 2937 |
| BauI | CACGAG | 2 cut(s) | 2080, 3966 |
| BbrPI | CACGTG | 1 cut(s) | 1357 |
| BbsI | GAAGAC | 5 cut(s) | 1154, 3179, 3362, 3963, 4152 |
| Bbv12I | GWGCWC | 3 cut(s) | 600, 1410, 2139 |
| BbvI | GCAGC | 7 cut(s) | 117, 461, 1213, 1260, 1395, 2892, 4043 |
| BceAI | ACGGC | 1 cut(s) | 2829 |
| BciT130I | CCWGG | 7 cut(s) | 1518, 1821, 2961, 3048, 3524, 3631, 3962 |
| BciVI | GTATCC | 1 cut(s) | 67 |
| BclI | TGATCA | 6 cut(s) | 6, 145, 864, 3040, 4003, 4084 |
| BcnI | CCSGG | 2 cut(s) | 410, 3363 |
| BcoDI | GTCTC | 5 cut(s) | 1431, 2042, 2375, 3115, 3249 |
| BcuI | ACTAGT | 1 cut(s) | 265 |
| BfmI | CTRYAG | 4 cut(s) | 2192, 2991, 3071, 4035 |
| BfoI | RGCGCY | 3 cut(s) | 111, 1713, 2976 |
| BfrI | CTTAAG | 1 cut(s) | 2321 |
| BfuAI | ACCTGC | 2 cut(s) | 1521, 3930 |
| BfuI | GTATCC | 1 cut(s) | 67 |
| BisI | GCNGC | 8 cut(s) | 106, 450, 1227, 1249, 1384, 2885, 2906, 4032 |
| BlsI | GCNGC | 8 cut(s) | 107, 451, 1228, 1250, 1385, 2886, 2907, 4033 |
| Bme1390I | CCNGG | 9 cut(s) | 410, 1518, 1821, 2961, 3048, 3363, 3524, 3631, 3962 |
| Bme18I | GGWCC | 3 cut(s) | 1647, 2302, 3916 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3139, 3430 |
| BmeT110I | CYCGRG | 2 cut(s) | 278, 591 |
| BmgBI | CACGTC | 6 cut(s) | 2424, 2493, 2628, 2697, 2766, 3427 |
| BmgT120I | GGNCC | 4 cut(s) | 1420, 1647, 2302, 3916 |
| BmiI | GGNNCC | 6 cut(s) | 1648, 2939, 3380, 3861, 3917, 4119 |
| BmrFI | CCNGG | 9 cut(s) | 410, 1518, 1821, 2961, 3048, 3363, 3524, 3631, 3962 |
| BmrI | ACTGGG | 3 cut(s) | 569, 1487, 3145 |
| BmtI | GCTAGC | 1 cut(s) | 3996 |
| BmuI | ACTGGG | 3 cut(s) | 569, 1487, 3145 |
| BpiI | GAAGAC | 5 cut(s) | 1154, 3179, 3362, 3963, 4152 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 473, 505, 3882, 3914 |
| BpmI | CTGGAG | 1 cut(s) | 3506 |
| BpuEI | CTTGAG | 4 cut(s) | 1756, 2033, 2066, 2135 |
| BpuMI | CCSGG | 2 cut(s) | 410, 3363 |
| Bsa29I | ATCGAT | 1 cut(s) | 2339 |
| BsaAI | YACGTR | 1 cut(s) | 1357 |
| BsaBI | GATNNNNATC | 3 cut(s) | 212, 3623, 4086 |
| BsaHI | GRCGYC | 2 cut(s) | 3140, 3367 |
| BsaI | GGTCTC | 1 cut(s) | 3115 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 249, 415, 1115, 2342, 2947, 3033, 3073, 3150, 3890 |
| Bse118I | RCCGGY | 1 cut(s) | 3473 |
| Bse1I | ACTGG | 9 cut(s) | 314, 498, 575, 840, 1482, 1582, 1894, 3140, 3348 |
| Bse3DI | GCAATG | 6 cut(s) | 484, 1207, 1223, 1320, 3994, 4185 |
| Bse8I | GATNNNNATC | 3 cut(s) | 212, 3623, 4086 |
| BseBI | CCWGG | 7 cut(s) | 1518, 1821, 2961, 3048, 3524, 3631, 3962 |
| BseCI | ATCGAT | 1 cut(s) | 2339 |
| BseJI | GATNNNNATC | 3 cut(s) | 212, 3623, 4086 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 249, 415, 1115, 2342, 2947, 3033, 3073, 3150, 3890 |
| BseMI | GCAATG | 6 cut(s) | 484, 1207, 1223, 1320, 3994, 4185 |
| BseMII | CTCAG | 6 cut(s) | 166, 456, 1001, 2370, 3585, 3636 |
| BseNI | ACTGG | 9 cut(s) | 314, 498, 575, 840, 1482, 1582, 1894, 3140, 3348 |
| BseRI | GAGGAG | 1 cut(s) | 174 |
| BseSI | GKGCMC | 3 cut(s) | 600, 2139, 2942 |
| BseXI | GCAGC | 7 cut(s) | 117, 461, 1213, 1260, 1395, 2892, 4043 |
| BseYI | CCCAGC | 1 cut(s) | 3066 |
| BsgI | GTGCAG | 1 cut(s) | 124 |
| Bsh1236I | CGCG | 1 cut(s) | 3375 |
| BshFI | GGCC | 8 cut(s) | 96, 469, 566, 1421, 1616, 1753, 1777, 3765 |
| BshNI | GGYRCC | 1 cut(s) | 2937 |
| BshVI | ATCGAT | 1 cut(s) | 2339 |
| BsiHKAI | GWGCWC | 3 cut(s) | 600, 1410, 2139 |
| BsiHKCI | CYCGRG | 2 cut(s) | 278, 591 |
| BsiSI | CCGG | 4 cut(s) | 410, 3191, 3362, 3474 |
| BslFI | GGGAC | 4 cut(s) | 1660, 3166, 3378, 3862 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 249, 415, 1115, 2342, 2947, 3033, 3073, 3150, 3890 |
| BsmAI | GTCTC | 5 cut(s) | 1431, 2042, 2375, 3115, 3249 |
| BsmBI | CGTCTC | 1 cut(s) | 3249 |
| BsmFI | GGGAC | 4 cut(s) | 1660, 3166, 3378, 3862 |
| BsmI | GAATGC | 2 cut(s) | 395, 1093 |
| BsnI | GGCC | 8 cut(s) | 96, 469, 566, 1421, 1616, 1753, 1777, 3765 |
| Bso31I | GGTCTC | 1 cut(s) | 3115 |
| BsoBI | CYCGRG | 2 cut(s) | 278, 591 |
| Bsp1286I | GDGCHC | 4 cut(s) | 600, 1410, 2139, 2942 |
| Bsp19I | CCATGG | 1 cut(s) | 35 |
| BspACI | CCGC | 5 cut(s) | 79, 368, 2885, 3375, 3880 |
| BspANI | GGCC | 8 cut(s) | 96, 469, 566, 1421, 1616, 1753, 1777, 3765 |
| BspCNI | CTCAG | 6 cut(s) | 165, 455, 1002, 2371, 3586, 3637 |
| BspDI | ATCGAT | 1 cut(s) | 2339 |
| BspFNI | CGCG | 1 cut(s) | 3375 |
| BspHI | TCATGA | 7 cut(s) | 385, 508, 715, 1057, 3586, 3802, 4090 |
| BspLI | GGNNCC | 6 cut(s) | 1648, 2939, 3380, 3861, 3917, 4119 |
| BspMAI | CTGCAG | 2 cut(s) | 2196, 2995 |
| BspMI | ACCTGC | 2 cut(s) | 1521, 3930 |
| BspOI | GCTAGC | 1 cut(s) | 3996 |
| BspT107I | GGYRCC | 1 cut(s) | 2937 |
| BspTI | CTTAAG | 1 cut(s) | 2321 |
| BspTNI | GGTCTC | 1 cut(s) | 3115 |
| BsrDI | GCAATG | 6 cut(s) | 484, 1207, 1223, 1320, 3994, 4185 |
| BsrFI | RCCGGY | 1 cut(s) | 3473 |
| BsrI | ACTGG | 9 cut(s) | 314, 498, 575, 840, 1482, 1582, 1894, 3140, 3348 |
| BssAI | RCCGGY | 1 cut(s) | 3473 |
| BssNI | GRCGYC | 2 cut(s) | 3140, 3367 |
| BssSI | CACGAG | 2 cut(s) | 2080, 3966 |
| BssT1I | CCWWGG | 7 cut(s) | 35, 2220, 2427, 2496, 2631, 2700, 2769 |
| Bst2BI | CACGAG | 2 cut(s) | 2080, 3966 |
| Bst2UI | CCWGG | 7 cut(s) | 1518, 1821, 2961, 3048, 3524, 3631, 3962 |
| Bst4CI | ACNGT | 5 cut(s) | 201, 548, 1691, 2891, 3456 |
| Bst6I | CTCTTC | 5 cut(s) | 28, 151, 2479, 2683, 3006 |
| BstACI | GRCGYC | 2 cut(s) | 3140, 3367 |
| BstAFI | CTTAAG | 1 cut(s) | 2321 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1465 |
| BstBAI | YACGTR | 1 cut(s) | 1357 |
| BstC8I | GCNNGC | 7 cut(s) | 1614, 2971, 3196, 3471, 3475, 3994, 4020 |
| BstDEI | CTNAG | 8 cut(s) | 152, 442, 1010, 1673, 2379, 2855, 3594, 3645 |
| BstDSI | CCRYGG | 2 cut(s) | 35, 2058 |
| BstEII | GGTNACC | 1 cut(s) | 835 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3888 |
| BstFNI | CGCG | 1 cut(s) | 3375 |
| BstH2I | RGCGCY | 3 cut(s) | 111, 1713, 2976 |
| BstHHI | GCGC | 3 cut(s) | 110, 1712, 2975 |
| BstMAI | GTCTC | 5 cut(s) | 1431, 2042, 2375, 3115, 3249 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 102, 1465, 1707, 3993, 4019, 4028, 4037, 4184 |
| BstNI | CCWGG | 7 cut(s) | 1518, 1821, 2961, 3048, 3524, 3631, 3962 |
| BstNSI | RCATGY | 7 cut(s) | 1329, 1666, 1858, 3198, 3473, 3491, 3831 |
| BstPI | GGTNACC | 1 cut(s) | 835 |
| BstSCI | CCNGG | 9 cut(s) | 408, 1516, 1819, 2959, 3046, 3361, 3522, 3629, 3960 |
| BstSFI | CTRYAG | 4 cut(s) | 2192, 2991, 3071, 4035 |
| BstSLI | GKGCMC | 3 cut(s) | 600, 2139, 2942 |
| BstUI | CGCG | 1 cut(s) | 3375 |
| BstV1I | GCAGC | 7 cut(s) | 117, 461, 1213, 1260, 1395, 2892, 4043 |
| BstV2I | GAAGAC | 5 cut(s) | 1154, 3179, 3362, 3963, 4152 |
| BstX2I | RGATCY | 9 cut(s) | 273, 603, 1621, 2416, 2620, 2758, 3076, 3378, 3859 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BstYI | RGATCY | 9 cut(s) | 273, 603, 1621, 2416, 2620, 2758, 3076, 3378, 3859 |
| Bsu15I | ATCGAT | 1 cut(s) | 2339 |
| BsuI | GTATCC | 1 cut(s) | 67 |
| BsuRI | GGCC | 8 cut(s) | 96, 469, 566, 1421, 1616, 1753, 1777, 3765 |
| BsuTUI | ATCGAT | 1 cut(s) | 2339 |
| BtgI | CCRYGG | 2 cut(s) | 35, 2058 |
| BtrI | CACGTC | 6 cut(s) | 2424, 2493, 2628, 2697, 2766, 3427 |
| BtsI | GCAGTG | 1 cut(s) | 2032 |
| BtsIMutI | CAGTG | 5 cut(s) | 505, 847, 2032, 2896, 3111 |
| BveI | ACCTGC | 2 cut(s) | 1521, 3930 |
| Cac8I | GCNNGC | 7 cut(s) | 1614, 2971, 3196, 3471, 3475, 3994, 4020 |
| CciI | TCATGA | 7 cut(s) | 385, 508, 715, 1057, 3586, 3802, 4090 |
| CfoI | GCGC | 3 cut(s) | 110, 1712, 2975 |
| Cfr10I | RCCGGY | 1 cut(s) | 3473 |
| Cfr13I | GGNCC | 4 cut(s) | 1420, 1647, 2302, 3916 |
| ClaI | ATCGAT | 1 cut(s) | 2339 |
| CseI | GACGC | 3 cut(s) | 104, 2792, 3129 |
| Csp6I | GTAC | 7 cut(s) | 308, 549, 571, 883, 1900, 2713, 4076 |
| CviQI | GTAC | 7 cut(s) | 308, 549, 571, 883, 1900, 2713, 4076 |
| DdeI | CTNAG | 8 cut(s) | 152, 442, 1010, 1673, 2379, 2855, 3594, 3645 |
| DraI | TTTAAA | 2 cut(s) | 1269, 1336 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3139, 3430 |
| EaeI | YGGCCR | 4 cut(s) | 564, 1614, 1775, 3763 |
| Eam1104I | CTCTTC | 5 cut(s) | 28, 151, 2479, 2683, 3006 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3139, 3430 |
| EarI | CTCTTC | 5 cut(s) | 28, 151, 2479, 2683, 3006 |
| Eco130I | CCWWGG | 7 cut(s) | 35, 2220, 2427, 2496, 2631, 2700, 2769 |
| Eco31I | GGTCTC | 1 cut(s) | 3115 |
| Eco47I | GGWCC | 3 cut(s) | 1647, 2302, 3916 |
| Eco47III | AGCGCT | 2 cut(s) | 109, 2974 |
| Eco57I | CTGAAG | 2 cut(s) | 2075, 3659 |
| Eco72I | CACGTG | 1 cut(s) | 1357 |
| Eco88I | CYCGRG | 2 cut(s) | 278, 591 |
| Eco91I | GGTNACC | 1 cut(s) | 835 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3888 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1420 |
| EcoO65I | GGTNACC | 1 cut(s) | 835 |
| EcoRII | CCWGG | 7 cut(s) | 1516, 1819, 2959, 3046, 3522, 3629, 3960 |
| EcoT14I | CCWWGG | 7 cut(s) | 35, 2220, 2427, 2496, 2631, 2700, 2769 |
| EcoT22I | ATGCAT | 4 cut(s) | 241, 1461, 1860, 3200 |
| ErhI | CCWWGG | 7 cut(s) | 35, 2220, 2427, 2496, 2631, 2700, 2769 |
| Esp3I | CGTCTC | 1 cut(s) | 3249 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 239, 271, 783, 815, 1093, 1125, 1299, 1331 |
| FaqI | GGGAC | 4 cut(s) | 1660, 3166, 3378, 3862 |
| FauI | CCCGC | 3 cut(s) | 86, 3368, 3887 |
| FauNDI | CATATG | 1 cut(s) | 3712 |
| FbaI | TGATCA | 6 cut(s) | 6, 145, 864, 3040, 4003, 4084 |
| FblI | GTMKAC | 3 cut(s) | 1105, 2026, 2585 |
| Fnu4HI | GCNGC | 8 cut(s) | 106, 450, 1227, 1249, 1384, 2885, 2906, 4032 |
| Fsp4HI | GCNGC | 8 cut(s) | 106, 450, 1227, 1249, 1384, 2885, 2906, 4032 |
| GlaI | GCGC | 3 cut(s) | 109, 1711, 2974 |
| GluI | GCNGC | 8 cut(s) | 106, 450, 1227, 1249, 1384, 2885, 2906, 4032 |
| GsaI | CCCAGC | 1 cut(s) | 3070 |
| GsuI | CTGGAG | 1 cut(s) | 3506 |
| HaeII | RGCGCY | 3 cut(s) | 111, 1713, 2976 |
| HaeIII | GGCC | 8 cut(s) | 96, 469, 566, 1421, 1616, 1753, 1777, 3765 |
| HapII | CCGG | 4 cut(s) | 410, 3191, 3362, 3474 |
| HgaI | GACGC | 3 cut(s) | 104, 2792, 3129 |
| HhaI | GCGC | 3 cut(s) | 110, 1712, 2975 |
| Hin1I | GRCGYC | 2 cut(s) | 3140, 3367 |
| Hin6I | GCGC | 3 cut(s) | 108, 1710, 2973 |
| HinP1I | GCGC | 3 cut(s) | 108, 1710, 2973 |
| HincII | GTYRAC | 2 cut(s) | 1106, 2586 |
| HindII | GTYRAC | 2 cut(s) | 1106, 2586 |
| HindIII | AAGCTT | 4 cut(s) | 611, 1308, 1374, 2087 |
| HpaII | CCGG | 4 cut(s) | 410, 3191, 3362, 3474 |
| HphI | GGTGA | 9 cut(s) | 16, 80, 121, 847, 1352, 2443, 2647, 3569, 3965 |
| HpyAV | CCTTC | 8 cut(s) | 145, 424, 826, 1297, 2754, 3015, 3634, 4019 |
| HpyCH4III | ACNGT | 5 cut(s) | 201, 548, 1691, 2891, 3456 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 102, 1465, 1707, 3993, 4019, 4028, 4037, 4184 |
| HpyF3I | CTNAG | 8 cut(s) | 152, 442, 1010, 1673, 2379, 2855, 3594, 3645 |
| Hsp92I | GRCGYC | 2 cut(s) | 3140, 3367 |
| HspAI | GCGC | 3 cut(s) | 108, 1710, 2973 |
| KroI | GCCGGC | 1 cut(s) | 3473 |
| KroNI | GCCGGC | 1 cut(s) | 3475 |
| Ksp22I | TGATCA | 6 cut(s) | 6, 145, 864, 3040, 4003, 4084 |
| LmnI | GCTCC | 4 cut(s) | 1609, 2578, 3844, 3903 |
| Lsp1109I | GCAGC | 7 cut(s) | 117, 461, 1213, 1260, 1395, 2892, 4043 |
| MaeIII | GTNAC | 2 cut(s) | 835, 2950 |
| MflI | RGATCY | 9 cut(s) | 273, 603, 1621, 2416, 2620, 2758, 3076, 3378, 3859 |
| MhlI | GDGCHC | 4 cut(s) | 600, 1410, 2139, 2942 |
| MlsI | TGGCCA | 4 cut(s) | 566, 1616, 1777, 3765 |
| MluNI | TGGCCA | 4 cut(s) | 566, 1616, 1777, 3765 |
| MlyI | GAGTC | 7 cut(s) | 1511, 2032, 2156, 2377, 2581, 3148, 3800 |
| MmeI | TCCRAC | 6 cut(s) | 1683, 1975, 3051, 3294, 3837, 4154 |
| Mox20I | TGGCCA | 4 cut(s) | 566, 1616, 1777, 3765 |
| Mph1103I | ATGCAT | 4 cut(s) | 241, 1461, 1860, 3200 |
| MroNI | GCCGGC | 1 cut(s) | 3473 |
| MroXI | GAANNNNTTC | 4 cut(s) | 747, 798, 1311, 3000 |
| MscI | TGGCCA | 4 cut(s) | 566, 1616, 1777, 3765 |
| MslI | CAYNNNNRTG | 9 cut(s) | 137, 1454, 1548, 1604, 3425, 3486, 3572, 3948, 4092 |
| Msp20I | TGGCCA | 4 cut(s) | 566, 1616, 1777, 3765 |
| MspA1I | CMGCKG | 2 cut(s) | 3463, 4034 |
| MspCI | CTTAAG | 1 cut(s) | 2321 |
| MspI | CCGG | 4 cut(s) | 410, 3191, 3362, 3474 |
| MspR9I | CCNGG | 9 cut(s) | 410, 1518, 1821, 2961, 3048, 3363, 3524, 3631, 3962 |
| Mva1269I | GAATGC | 2 cut(s) | 395, 1093 |
| MvaI | CCWGG | 7 cut(s) | 1518, 1821, 2961, 3048, 3524, 3631, 3962 |
| MvnI | CGCG | 1 cut(s) | 3375 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 102, 1465, 1707, 3993, 4019, 4028, 4037, 4184 |
| NaeI | GCCGGC | 1 cut(s) | 3475 |
| NciI | CCSGG | 2 cut(s) | 410, 3363 |
| NcoI | CCATGG | 1 cut(s) | 35 |
| NdeI | CATATG | 1 cut(s) | 3712 |
| NgoMIV | GCCGGC | 1 cut(s) | 3473 |
| NheI | GCTAGC | 1 cut(s) | 3992 |
| NlaIV | GGNNCC | 6 cut(s) | 1648, 2939, 3380, 3861, 3917, 4119 |
| NmuCI | GTSAC | 1 cut(s) | 835 |
| NsiI | ATGCAT | 4 cut(s) | 241, 1461, 1860, 3200 |
| NspI | RCATGY | 7 cut(s) | 1329, 1666, 1858, 3198, 3473, 3491, 3831 |
| OliI | CACNNNNGTG | 1 cut(s) | 3572 |
| PaeI | GCATGC | 2 cut(s) | 3198, 3473 |
| PaeR7I | CTCGAG | 1 cut(s) | 278 |
| PagI | TCATGA | 7 cut(s) | 385, 508, 715, 1057, 3586, 3802, 4090 |
| PaqCI | CACCTGC | 1 cut(s) | 3930 |
| PciI | ACATGT | 1 cut(s) | 3827 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2842 |
| PctI | GAATGC | 2 cut(s) | 395, 1093 |
| PdiI | GCCGGC | 1 cut(s) | 3475 |
| PdmI | GAANNNNTTC | 4 cut(s) | 747, 798, 1311, 3000 |
| PflFI | GACNNNGTC | 1 cut(s) | 3790 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2342 |
| PfoI | TCCNGGA | 2 cut(s) | 3361, 3522 |
| PkrI | GCNGC | 8 cut(s) | 107, 451, 1228, 1250, 1385, 2886, 2907, 4033 |
| PleI | GAGTC | 7 cut(s) | 1510, 2031, 2155, 2377, 2581, 3148, 3799 |
| PmaCI | CACGTG | 1 cut(s) | 1357 |
| PmlI | CACGTG | 1 cut(s) | 1357 |
| PpsI | GAGTC | 7 cut(s) | 1510, 2031, 2155, 2377, 2581, 3148, 3799 |
| Ppu21I | YACGTR | 1 cut(s) | 1357 |
| PscI | ACATGT | 1 cut(s) | 3827 |
| Psp1406I | AACGTT | 3 cut(s) | 1945, 2442, 2646 |
| Psp6I | CCWGG | 7 cut(s) | 1516, 1819, 2959, 3046, 3522, 3629, 3960 |
| PspCI | CACGTG | 1 cut(s) | 1357 |
| PspEI | GGTNACC | 1 cut(s) | 835 |
| PspFI | CCCAGC | 1 cut(s) | 3066 |
| PspGI | CCWGG | 7 cut(s) | 1516, 1819, 2959, 3046, 3522, 3629, 3960 |
| PspN4I | GGNNCC | 6 cut(s) | 1648, 2939, 3380, 3861, 3917, 4119 |
| PspPI | GGNCC | 4 cut(s) | 1420, 1647, 2302, 3916 |
| PspXI | VCTCGAGB | 1 cut(s) | 278 |
| PstI | CTGCAG | 2 cut(s) | 2196, 2995 |
| PsuI | RGATCY | 9 cut(s) | 273, 603, 1621, 2416, 2620, 2758, 3076, 3378, 3859 |
| PsyI | GACNNNGTC | 1 cut(s) | 3790 |
| PvuII | CAGCTG | 2 cut(s) | 3463, 4034 |
| RsaI | GTAC | 7 cut(s) | 309, 550, 572, 884, 1901, 2714, 4077 |
| RsaNI | GTAC | 7 cut(s) | 308, 549, 571, 883, 1900, 2713, 4076 |
| RseI | CAYNNNNRTG | 9 cut(s) | 137, 1454, 1548, 1604, 3425, 3486, 3572, 3948, 4092 |
| SalI | GTCGAC | 2 cut(s) | 1104, 2584 |
| SatI | GCNGC | 8 cut(s) | 106, 450, 1227, 1249, 1384, 2885, 2906, 4032 |
| Sau96I | GGNCC | 4 cut(s) | 1420, 1647, 2302, 3916 |
| SchI | GAGTC | 7 cut(s) | 1511, 2032, 2156, 2377, 2581, 3148, 3800 |
| ScrFI | CCNGG | 9 cut(s) | 410, 1518, 1821, 2961, 3048, 3363, 3524, 3631, 3962 |
| SduI | GDGCHC | 4 cut(s) | 600, 1410, 2139, 2942 |
| SfcI | CTRYAG | 4 cut(s) | 2192, 2991, 3071, 4035 |
| Sfr274I | CTCGAG | 1 cut(s) | 278 |
| SinI | GGWCC | 3 cut(s) | 1647, 2302, 3916 |
| SlaI | CTCGAG | 1 cut(s) | 278 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 137, 1454, 1548, 1604, 3425, 3486, 3572, 3948, 4092 |
| SmlI | CTYRAG | 6 cut(s) | 278, 1735, 2012, 2045, 2114, 2321 |
| SmoI | CTYRAG | 6 cut(s) | 278, 1735, 2012, 2045, 2114, 2321 |
| SpeI | ACTAGT | 1 cut(s) | 265 |
| SphI | GCATGC | 2 cut(s) | 3198, 3473 |
| SsiI | CCGC | 5 cut(s) | 79, 368, 2885, 3375, 3880 |
| SspI | AATATT | 1 cut(s) | 1432 |
| StyD4I | CCNGG | 9 cut(s) | 408, 1516, 1819, 2959, 3046, 3361, 3522, 3629, 3960 |
| StyI | CCWWGG | 7 cut(s) | 35, 2220, 2427, 2496, 2631, 2700, 2769 |
| TaaI | ACNGT | 5 cut(s) | 201, 548, 1691, 2891, 3456 |
| TatI | WGTACW | 3 cut(s) | 548, 882, 4075 |
| TauI | GCSGC | 1 cut(s) | 2887 |
| TscAI | CASTG | 5 cut(s) | 505, 847, 2039, 2896, 3111 |
| TseFI | GTSAC | 1 cut(s) | 835 |
| TseI | GCWGC | 7 cut(s) | 105, 449, 1226, 1248, 1383, 2905, 4031 |
| Tsp45I | GTSAC | 1 cut(s) | 835 |
| TspGWI | ACGGA | 3 cut(s) | 1981, 2075, 2913 |
| TspRI | CASTG | 5 cut(s) | 505, 847, 2039, 2896, 3111 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3790 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2342 |
| Vha464I | CTTAAG | 1 cut(s) | 2321 |
| VneI | GTGCAC | 2 cut(s) | 596, 2135 |
| VpaK11BI | GGWCC | 3 cut(s) | 1647, 2302, 3916 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3888 |
| XapI | RAATTY | 5 cut(s) | 757, 1254, 2119, 3206, 3612 |
| XbaI | TCTAGA | 4 cut(s) | 227, 1069, 1954, 2914 |
| XceI | RCATGY | 7 cut(s) | 1329, 1666, 1858, 3198, 3473, 3491, 3831 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 253 |
| XhoI | CTCGAG | 1 cut(s) | 278 |
| XmiI | GTMKAC | 3 cut(s) | 1105, 2026, 2585 |
| XmnI | GAANNNNTTC | 4 cut(s) | 747, 798, 1311, 3000 |
| ZraI | GACGTC | 1 cut(s) | 3368 |
| Zsp2I | ATGCAT | 4 cut(s) | 241, 1461, 1860, 3200 |