TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 108 - 274 | 3.9e-51 | TIR domain |
| TIR_2 | PF13676 | 110 - 208 | 1.7e-13 | TIR domain |
| NB-ARC | PF00931 | 296 - 462 | 1.6e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 533 - 601 | 2.5e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 790 - 875 | 1.4e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 927 - 1019 | 5.1e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1979 |
| Acc65I | GGTACC | 1 cut(s) | 636 |
| AccB1I | GGYRCC | 1 cut(s) | 636 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3105 |
| AccI | GTMKAC | 1 cut(s) | 3451 |
| AciI | CCGC | 8 cut(s) | 99, 148, 182, 185, 948, 2904, 3329, 3525 |
| AclWI | GGATC | 6 cut(s) | 163, 236, 580, 614, 627, 1583 |
| AcoI | YGGCCR | 3 cut(s) | 96, 599, 1323 |
| AcsI | RAATTY | 9 cut(s) | 1137, 2152, 2161, 2192, 2245, 2918, 3156, 3209, 3303 |
| AcuI | CTGAAG | 5 cut(s) | 242, 822, 2065, 2703, 2802 |
| AjnI | CCWGG | 6 cut(s) | 152, 1104, 1912, 2047, 2796, 3534 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3239, 3271 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 903, 935 |
| Alw21I | GWGCWC | 2 cut(s) | 3534, 3621 |
| Alw26I | GTCTC | 3 cut(s) | 354, 2989, 3006 |
| Alw44I | GTGCAC | 1 cut(s) | 3530 |
| AlwI | GGATC | 6 cut(s) | 163, 236, 580, 614, 627, 1583 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 178 |
| Ama87I | CYCGRG | 2 cut(s) | 357, 2408 |
| ApaLI | GTGCAC | 1 cut(s) | 3530 |
| ApeKI | GCWGC | 7 cut(s) | 737, 1254, 1511, 1818, 2397, 3325, 3522 |
| ApoI | RAATTY | 9 cut(s) | 1137, 2152, 2161, 2192, 2245, 2918, 3156, 3209, 3303 |
| AseI | ATTAAT | 2 cut(s) | 408, 1986 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 549, 868, 1373, 1605, 1788 |
| Asp718I | GGTACC | 1 cut(s) | 636 |
| AspS9I | GGNCC | 9 cut(s) | 52, 128, 150, 190, 1102, 1717, 2206, 3431, 3633 |
| AsuHPI | GGTGA | 9 cut(s) | 199, 298, 668, 1156, 1667, 1794, 2744, 2759, 2905 |
| AsuII | TTCGAA | 2 cut(s) | 2975, 3300 |
| AvaI | CYCGRG | 2 cut(s) | 357, 2408 |
| AvaII | GGWCC | 3 cut(s) | 190, 2206, 3431 |
| AxyI | CCTNAGG | 1 cut(s) | 3587 |
| BaeGI | GKGCMC | 1 cut(s) | 3534 |
| BamHI | GGATCC | 1 cut(s) | 619 |
| BanI | GGYRCC | 1 cut(s) | 636 |
| BanII | GRGCYC | 1 cut(s) | 3621 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2639, 2671 |
| BauI | CACGAG | 3 cut(s) | 92, 873, 3393 |
| BbsI | GAAGAC | 1 cut(s) | 2891 |
| Bbv12I | GWGCWC | 2 cut(s) | 3534, 3621 |
| BbvI | GCAGC | 7 cut(s) | 749, 1266, 1498, 1830, 2384, 3312, 3509 |
| BceAI | ACGGC | 9 cut(s) | 115, 250, 279, 738, 1338, 1806, 2316, 2719, 3620 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 729, 763, 3369, 3403 |
| BciT130I | CCWGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| BciVI | GTATCC | 2 cut(s) | 346, 3102 |
| BclI | TGATCA | 1 cut(s) | 2758 |
| BcoDI | GTCTC | 3 cut(s) | 354, 2989, 3006 |
| BfaI | CTAG | 3 cut(s) | 1061, 1664, 3501 |
| BfmI | CTRYAG | 1 cut(s) | 2591 |
| BfuI | GTATCC | 2 cut(s) | 346, 3102 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2798 |
| BlpI | GCTNAGC | 1 cut(s) | 849 |
| BmcAI | AGTACT | 2 cut(s) | 1704, 3321 |
| Bme1390I | CCNGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| Bme18I | GGWCC | 3 cut(s) | 190, 2206, 3431 |
| BmeT110I | CYCGRG | 2 cut(s) | 357, 2408 |
| BmgT120I | GGNCC | 9 cut(s) | 52, 128, 150, 190, 1102, 1717, 2206, 3431, 3633 |
| BmiI | GGNNCC | 8 cut(s) | 238, 621, 638, 1103, 2036, 2208, 3432, 3510 |
| BmrFI | CCNGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2082 |
| BpiI | GAAGAC | 1 cut(s) | 2891 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 709, 741 |
| BpmI | CTGGAG | 3 cut(s) | 47, 1248, 1787 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 849 |
| Bpu14I | TTCGAA | 2 cut(s) | 2975, 3300 |
| BpuEI | CTTGAG | 3 cut(s) | 911, 2360, 3605 |
| BsaBI | GATNNNNATC | 3 cut(s) | 494, 1851, 2757 |
| BsaJI | CCNNGG | 3 cut(s) | 152, 210, 1326 |
| Bse118I | RCCGGY | 2 cut(s) | 187, 601 |
| Bse1I | ACTGG | 5 cut(s) | 30, 1210, 2100, 2628, 3030 |
| Bse21I | CCTNAGG | 1 cut(s) | 3587 |
| Bse3DI | GCAATG | 1 cut(s) | 1614 |
| Bse8I | GATNNNNATC | 3 cut(s) | 494, 1851, 2757 |
| BseBI | CCWGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| BseDI | CCNNGG | 3 cut(s) | 152, 210, 1326 |
| BseJI | GATNNNNATC | 3 cut(s) | 494, 1851, 2757 |
| BseMI | GCAATG | 1 cut(s) | 1614 |
| BseMII | CTCAG | 3 cut(s) | 2262, 2581, 3601 |
| BseNI | ACTGG | 5 cut(s) | 30, 1210, 2100, 2628, 3030 |
| BseRI | GAGGAG | 5 cut(s) | 44, 179, 227, 230, 2948 |
| BseSI | GKGCMC | 1 cut(s) | 3534 |
| BseXI | GCAGC | 7 cut(s) | 749, 1266, 1498, 1830, 2384, 3312, 3509 |
| BseYI | CCCAGC | 2 cut(s) | 2056, 3331 |
| BsgI | GTGCAG | 2 cut(s) | 700, 3399 |
| Bsh1285I | CGRYCG | 1 cut(s) | 39 |
| BshNI | GGYRCC | 1 cut(s) | 636 |
| BsiEI | CGRYCG | 1 cut(s) | 39 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3534, 3621 |
| BsiHKCI | CYCGRG | 2 cut(s) | 357, 2408 |
| BsiSI | CCGG | 3 cut(s) | 62, 188, 602 |
| BsiWI | CGTACG | 1 cut(s) | 321 |
| BslFI | GGGAC | 1 cut(s) | 2192 |
| BsmAI | GTCTC | 3 cut(s) | 354, 2989, 3006 |
| BsmFI | GGGAC | 1 cut(s) | 2192 |
| BsmI | GAATGC | 1 cut(s) | 1375 |
| BsoBI | CYCGRG | 2 cut(s) | 357, 2408 |
| Bsp119I | TTCGAA | 2 cut(s) | 2975, 3300 |
| Bsp1286I | GDGCHC | 2 cut(s) | 3534, 3621 |
| Bsp1407I | TGTACA | 2 cut(s) | 877, 2258 |
| Bsp143I | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 849 |
| BspACI | CCGC | 8 cut(s) | 99, 148, 182, 185, 948, 2904, 3329, 3525 |
| BspCNI | CTCAG | 3 cut(s) | 2263, 2580, 3600 |
| BspHI | TCATGA | 1 cut(s) | 1840 |
| BspLI | GGNNCC | 8 cut(s) | 238, 621, 638, 1103, 2036, 2208, 3432, 3510 |
| BspPI | GGATC | 6 cut(s) | 163, 236, 580, 614, 627, 1583 |
| BspQI | GCTCTTC | 2 cut(s) | 423, 3609 |
| BspT104I | TTCGAA | 2 cut(s) | 2975, 3300 |
| BspT107I | GGYRCC | 1 cut(s) | 636 |
| BsrDI | GCAATG | 1 cut(s) | 1614 |
| BsrFI | RCCGGY | 2 cut(s) | 187, 601 |
| BsrGI | TGTACA | 2 cut(s) | 877, 2258 |
| BsrI | ACTGG | 5 cut(s) | 30, 1210, 2100, 2628, 3030 |
| BssAI | RCCGGY | 2 cut(s) | 187, 601 |
| BssECI | CCNNGG | 3 cut(s) | 152, 210, 1326 |
| BssMI | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| BssSI | CACGAG | 3 cut(s) | 92, 873, 3393 |
| BssT1I | CCWWGG | 1 cut(s) | 1326 |
| Bst2BI | CACGAG | 3 cut(s) | 92, 873, 3393 |
| Bst2UI | CCWGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| Bst4CI | ACNGT | 8 cut(s) | 636, 1577, 2120, 2258, 2744, 2825, 3114, 3204 |
| Bst6I | CTCTTC | 4 cut(s) | 301, 423, 798, 3609 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1762 |
| BstAUI | TGTACA | 2 cut(s) | 877, 2258 |
| BstBI | TTCGAA | 2 cut(s) | 2975, 3300 |
| BstC8I | GCNNGC | 6 cut(s) | 1509, 1659, 1816, 1993, 2456, 2908 |
| BstDEI | CTNAG | 8 cut(s) | 434, 728, 780, 849, 1180, 2271, 2567, 3587 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2201 |
| BstKTI | GATC | 8 cut(s) | 39, 171, 244, 575, 622, 1591, 2509, 2761 |
| BstMAI | GTCTC | 3 cut(s) | 354, 2989, 3006 |
| BstMBI | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| BstMCI | CGRYCG | 1 cut(s) | 39 |
| BstNI | CCWGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| BstNSI | RCATGY | 4 cut(s) | 1511, 1623, 1694, 2462 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2082 |
| BstSCI | CCNGG | 6 cut(s) | 152, 1104, 1912, 2047, 2796, 3534 |
| BstSFI | CTRYAG | 1 cut(s) | 2591 |
| BstSLI | GKGCMC | 1 cut(s) | 3534 |
| BstV1I | GCAGC | 7 cut(s) | 749, 1266, 1498, 1830, 2384, 3312, 3509 |
| BstV2I | GAAGAC | 1 cut(s) | 2891 |
| BstX2I | RGATCY | 3 cut(s) | 168, 619, 1588 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 160 |
| BstYI | RGATCY | 3 cut(s) | 168, 619, 1588 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3587 |
| BsuI | GTATCC | 2 cut(s) | 346, 3102 |
| BtsI | GCAGTG | 2 cut(s) | 233, 1441 |
| BtsIMutI | CAGTG | 6 cut(s) | 23, 233, 1441, 1582, 3023, 3473 |
| Cac8I | GCNNGC | 6 cut(s) | 1509, 1659, 1816, 1993, 2456, 2908 |
| CaiI | CAGNNNCTG | 1 cut(s) | 178 |
| CciI | TCATGA | 1 cut(s) | 1840 |
| Cfr10I | RCCGGY | 2 cut(s) | 187, 601 |
| Cfr13I | GGNCC | 9 cut(s) | 52, 128, 150, 190, 1102, 1717, 2206, 3431, 3633 |
| CseI | GACGC | 1 cut(s) | 3437 |
| CsiI | ACCWGGT | 1 cut(s) | 3534 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2973, 3008 |
| DdeI | CTNAG | 8 cut(s) | 434, 728, 780, 849, 1180, 2271, 2567, 3587 |
| DpnI | GATC | 8 cut(s) | 38, 170, 243, 574, 621, 1590, 2508, 2760 |
| DpnII | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| DraI | TTTAAA | 3 cut(s) | 1951, 2166, 2182 |
| EaeI | YGGCCR | 3 cut(s) | 96, 599, 1323 |
| Eam1104I | CTCTTC | 4 cut(s) | 301, 423, 798, 3609 |
| EarI | CTCTTC | 4 cut(s) | 301, 423, 798, 3609 |
| Ecl136II | GAGCTC | 1 cut(s) | 3619 |
| Eco130I | CCWWGG | 1 cut(s) | 1326 |
| Eco147I | AGGCCT | 1 cut(s) | 1059 |
| Eco24I | GRGCYC | 1 cut(s) | 3621 |
| Eco32I | GATATC | 1 cut(s) | 1549 |
| Eco47I | GGWCC | 3 cut(s) | 190, 2206, 3431 |
| Eco53kI | GAGCTC | 1 cut(s) | 3619 |
| Eco57I | CTGAAG | 5 cut(s) | 242, 822, 2065, 2703, 2802 |
| Eco81I | CCTNAGG | 1 cut(s) | 3587 |
| Eco88I | CYCGRG | 2 cut(s) | 357, 2408 |
| EcoICRI | GAGCTC | 1 cut(s) | 3619 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2201 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1717, 2206 |
| EcoRI | GAATTC | 1 cut(s) | 1137 |
| EcoRII | CCWGG | 6 cut(s) | 152, 1104, 1912, 2047, 2796, 3534 |
| EcoRV | GATATC | 1 cut(s) | 1549 |
| EcoT14I | CCWWGG | 1 cut(s) | 1326 |
| EcoT22I | ATGCAT | 1 cut(s) | 1758 |
| EcoT38I | GRGCYC | 1 cut(s) | 3621 |
| ErhI | CCWWGG | 1 cut(s) | 1326 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 873, 905, 1593, 1625 |
| FaqI | GGGAC | 1 cut(s) | 2192 |
| FauI | CCCGC | 2 cut(s) | 941, 2911 |
| FauNDI | CATATG | 1 cut(s) | 1396 |
| FbaI | TGATCA | 1 cut(s) | 2758 |
| FblI | GTMKAC | 1 cut(s) | 3451 |
| FriOI | GRGCYC | 1 cut(s) | 3621 |
| FspBI | CTAG | 3 cut(s) | 1061, 1664, 3501 |
| GsaI | CCCAGC | 2 cut(s) | 2060, 3335 |
| GsuI | CTGGAG | 3 cut(s) | 47, 1248, 1787 |
| HapII | CCGG | 3 cut(s) | 62, 188, 602 |
| HgaI | GACGC | 1 cut(s) | 3437 |
| HincII | GTYRAC | 2 cut(s) | 2362, 3452 |
| HindII | GTYRAC | 2 cut(s) | 2362, 3452 |
| HindIII | AAGCTT | 4 cut(s) | 2303, 2452, 2867, 2978 |
| HpaII | CCGG | 3 cut(s) | 62, 188, 602 |
| HphI | GGTGA | 9 cut(s) | 199, 298, 668, 1156, 1667, 1794, 2744, 2759, 2905 |
| Hpy99I | CGWCG | 4 cut(s) | 203, 236, 770, 3453 |
| HpyCH4III | ACNGT | 8 cut(s) | 636, 1577, 2120, 2258, 2744, 2825, 3114, 3204 |
| HpyCH4IV | ACGT | 2 cut(s) | 829, 2678 |
| HpyF3I | CTNAG | 8 cut(s) | 434, 728, 780, 849, 1180, 2271, 2567, 3587 |
| HpySE526I | ACGT | 2 cut(s) | 829, 2678 |
| KpnI | GGTACC | 1 cut(s) | 640 |
| Ksp22I | TGATCA | 1 cut(s) | 2758 |
| Kzo9I | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| LguI | GCTCTTC | 2 cut(s) | 423, 3609 |
| LmnI | GCTCC | 5 cut(s) | 156, 217, 242, 2935, 3514 |
| Lsp1109I | GCAGC | 7 cut(s) | 749, 1266, 1498, 1830, 2384, 3312, 3509 |
| MabI | ACCWGGT | 1 cut(s) | 3534 |
| MaeI | CTAG | 3 cut(s) | 1061, 1664, 3501 |
| MaeII | ACGT | 2 cut(s) | 829, 2678 |
| MalI | GATC | 8 cut(s) | 38, 170, 243, 574, 621, 1590, 2508, 2760 |
| MboI | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| MfeI | CAATTG | 6 cut(s) | 474, 590, 966, 1416, 2496, 3100 |
| MflI | RGATCY | 3 cut(s) | 168, 619, 1588 |
| MhlI | GDGCHC | 2 cut(s) | 3534, 3621 |
| MlyI | GAGTC | 4 cut(s) | 1808, 3363, 3486, 3591 |
| MmeI | TCCRAC | 6 cut(s) | 789, 841, 1194, 2100, 2269, 2699 |
| Mph1103I | ATGCAT | 1 cut(s) | 1758 |
| MroXI | GAANNNNTTC | 5 cut(s) | 549, 868, 1373, 1605, 1788 |
| MslI | CAYNNNNRTG | 6 cut(s) | 526, 532, 1399, 1482, 1751, 1845 |
| MspA1I | CMGCKG | 4 cut(s) | 101, 148, 3174, 3331 |
| MspI | CCGG | 3 cut(s) | 62, 188, 602 |
| MspR9I | CCNGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| MunI | CAATTG | 6 cut(s) | 474, 590, 966, 1416, 2496, 3100 |
| Mva1269I | GAATGC | 1 cut(s) | 1375 |
| MvaI | CCWGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| NdeI | CATATG | 1 cut(s) | 1396 |
| NdeII | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| NlaIV | GGNNCC | 8 cut(s) | 238, 621, 638, 1103, 2036, 2208, 3432, 3510 |
| NmuCI | GTSAC | 4 cut(s) | 1800, 2120, 2738, 3116 |
| NsiI | ATGCAT | 1 cut(s) | 1758 |
| NspI | RCATGY | 4 cut(s) | 1511, 1623, 1694, 2462 |
| NspV | TTCGAA | 2 cut(s) | 2975, 3300 |
| PaeI | GCATGC | 1 cut(s) | 1511 |
| PaeR7I | CTCGAG | 2 cut(s) | 357, 2408 |
| PagI | TCATGA | 1 cut(s) | 1840 |
| PceI | AGGCCT | 1 cut(s) | 1059 |
| PciSI | GCTCTTC | 2 cut(s) | 423, 3609 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PctI | GAATGC | 1 cut(s) | 1375 |
| PdmI | GAANNNNTTC | 5 cut(s) | 549, 868, 1373, 1605, 1788 |
| Pfl23II | CGTACG | 1 cut(s) | 321 |
| PflFI | GACNNNGTC | 1 cut(s) | 704 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3105 |
| Ple19I | CGATCG | 1 cut(s) | 39 |
| PleI | GAGTC | 4 cut(s) | 1807, 3363, 3486, 3591 |
| PpsI | GAGTC | 4 cut(s) | 1807, 3363, 3486, 3591 |
| PpuMI | RGGWCCY | 1 cut(s) | 2206 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2082 |
| PshBI | ATTAAT | 2 cut(s) | 408, 1986 |
| PsiI | TTATAA | 1 cut(s) | 1979 |
| Psp124BI | GAGCTC | 1 cut(s) | 3621 |
| Psp5II | RGGWCCY | 1 cut(s) | 2206 |
| Psp6I | CCWGG | 6 cut(s) | 152, 1104, 1912, 2047, 2796, 3534 |
| PspFI | CCCAGC | 2 cut(s) | 2056, 3331 |
| PspGI | CCWGG | 6 cut(s) | 152, 1104, 1912, 2047, 2796, 3534 |
| PspLI | CGTACG | 1 cut(s) | 321 |
| PspN4I | GGNNCC | 8 cut(s) | 238, 621, 638, 1103, 2036, 2208, 3432, 3510 |
| PspPI | GGNCC | 9 cut(s) | 52, 128, 150, 190, 1102, 1717, 2206, 3431, 3633 |
| PspPPI | RGGWCCY | 1 cut(s) | 2206 |
| PstNI | CAGNNNCTG | 1 cut(s) | 178 |
| PsuI | RGATCY | 3 cut(s) | 168, 619, 1588 |
| PsyI | GACNNNGTC | 1 cut(s) | 704 |
| PvuI | CGATCG | 1 cut(s) | 39 |
| PvuII | CAGCTG | 1 cut(s) | 3174 |
| RseI | CAYNNNNRTG | 6 cut(s) | 526, 532, 1399, 1482, 1751, 1845 |
| SacI | GAGCTC | 1 cut(s) | 3621 |
| SalI | GTCGAC | 1 cut(s) | 3450 |
| SapI | GCTCTTC | 2 cut(s) | 423, 3609 |
| Sau3AI | GATC | 8 cut(s) | 36, 168, 241, 572, 619, 1588, 2506, 2758 |
| Sau96I | GGNCC | 9 cut(s) | 52, 128, 150, 190, 1102, 1717, 2206, 3431, 3633 |
| ScaI | AGTACT | 2 cut(s) | 1704, 3321 |
| SchI | GAGTC | 4 cut(s) | 1808, 3363, 3486, 3591 |
| ScrFI | CCNGG | 6 cut(s) | 154, 1106, 1914, 2049, 2798, 3536 |
| SduI | GDGCHC | 2 cut(s) | 3534, 3621 |
| SexAI | ACCWGGT | 1 cut(s) | 3534 |
| SfcI | CTRYAG | 1 cut(s) | 2591 |
| Sfr274I | CTCGAG | 2 cut(s) | 357, 2408 |
| SfuI | TTCGAA | 2 cut(s) | 2975, 3300 |
| SinI | GGWCC | 3 cut(s) | 190, 2206, 3431 |
| SlaI | CTCGAG | 2 cut(s) | 357, 2408 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 526, 532, 1399, 1482, 1751, 1845 |
| SmlI | CTYRAG | 5 cut(s) | 357, 890, 2339, 2408, 3620 |
| SmoI | CTYRAG | 5 cut(s) | 357, 890, 2339, 2408, 3620 |
| SphI | GCATGC | 1 cut(s) | 1511 |
| SseBI | AGGCCT | 1 cut(s) | 1059 |
| SsiI | CCGC | 8 cut(s) | 99, 148, 182, 185, 948, 2904, 3329, 3525 |
| SspI | AATATT | 1 cut(s) | 2327 |
| SspMI | CTAG | 3 cut(s) | 1061, 1664, 3501 |
| SstI | GAGCTC | 1 cut(s) | 3621 |
| StuI | AGGCCT | 1 cut(s) | 1059 |
| StyD4I | CCNGG | 6 cut(s) | 152, 1104, 1912, 2047, 2796, 3534 |
| StyI | CCWWGG | 1 cut(s) | 1326 |
| TaaI | ACNGT | 8 cut(s) | 636, 1577, 2120, 2258, 2744, 2825, 3114, 3204 |
| TaiI | ACGT | 2 cut(s) | 832, 2681 |
| TaqI | TCGA | 9 cut(s) | 198, 358, 1066, 1563, 2409, 2975, 3300, 3451, 3472 |
| TaqII | GACCGA | 1 cut(s) | 1136 |
| TatI | WGTACW | 4 cut(s) | 877, 1702, 2258, 3319 |
| TauI | GCSGC | 5 cut(s) | 101, 151, 184, 187, 3331 |
| TscAI | CASTG | 6 cut(s) | 30, 233, 1448, 1582, 3030, 3473 |
| TseFI | GTSAC | 4 cut(s) | 1800, 2120, 2738, 3116 |
| TseI | GCWGC | 7 cut(s) | 737, 1254, 1511, 1818, 2397, 3325, 3522 |
| Tsp45I | GTSAC | 4 cut(s) | 1800, 2120, 2738, 3116 |
| TspGWI | ACGGA | 8 cut(s) | 290, 309, 1581, 3295, 3344, 3405, 3423, 3485 |
| TspRI | CASTG | 6 cut(s) | 30, 233, 1448, 1582, 3030, 3473 |
| Tth111I | GACNNNGTC | 1 cut(s) | 704 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3105 |
| VneI | GTGCAC | 1 cut(s) | 3530 |
| VpaK11BI | GGWCC | 3 cut(s) | 190, 2206, 3431 |
| VspI | ATTAAT | 2 cut(s) | 408, 1986 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2201 |
| XapI | RAATTY | 9 cut(s) | 1137, 2152, 2161, 2192, 2245, 2918, 3156, 3209, 3303 |
| XceI | RCATGY | 4 cut(s) | 1511, 1623, 1694, 2462 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 113 |
| XhoI | CTCGAG | 2 cut(s) | 357, 2408 |
| XmiI | GTMKAC | 1 cut(s) | 3451 |
| XmnI | GAANNNNTTC | 5 cut(s) | 549, 868, 1373, 1605, 1788 |
| XspI | CTAG | 3 cut(s) | 1061, 1664, 3501 |
| ZrmI | AGTACT | 2 cut(s) | 1704, 3321 |
| Zsp2I | ATGCAT | 1 cut(s) | 1758 |