TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 20 - 187 | 5.9e-53 | TIR domain |
| TIR_2 | PF13676 | 22 - 117 | 1.1e-14 | TIR domain |
| NB-ARC | PF00931 | 199 - 371 | 2.8e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 440 - 510 | 6.7e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 592 - 731 | 9.5e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 649 - 732 | 4e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2690 |
| Acc36I | ACCTGC | 2 cut(s) | 1413, 2690 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 898 |
| AccI | GTMKAC | 1 cut(s) | 1831 |
| AccII | CGCG | 3 cut(s) | 94, 932, 1581 |
| AciI | CCGC | 8 cut(s) | 33, 81, 932, 1668, 1728, 2552, 2663, 2921 |
| AclWI | GGATC | 5 cut(s) | 223, 638, 942, 1323, 2046 |
| AcoI | YGGCCR | 3 cut(s) | 1775, 2200, 2511 |
| AcuI | CTGAAG | 3 cut(s) | 61, 896, 2649 |
| AfaI | GTAC | 2 cut(s) | 1389, 2139 |
| AfeI | AGCGCT | 1 cut(s) | 1083 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 17, 127, 898, 1762, 2520, 2552 |
| AflII | CTTAAG | 1 cut(s) | 617 |
| AflIII | ACRYGT | 1 cut(s) | 2859 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2020 |
| AhlI | ACTAGT | 1 cut(s) | 1864 |
| AjnI | CCWGG | 4 cut(s) | 375, 747, 2034, 2508 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 254, 286, 2631, 2663 |
| AleI | CACNNNNGTG | 1 cut(s) | 1842 |
| Alw21I | GWGCWC | 1 cut(s) | 2662 |
| Alw26I | GTCTC | 3 cut(s) | 2007, 2112, 2443 |
| AlwI | GGATC | 5 cut(s) | 223, 638, 942, 1323, 2046 |
| Aor51HI | AGCGCT | 1 cut(s) | 1083 |
| ApaI | GGGCCC | 1 cut(s) | 1851 |
| ApeKI | GCWGC | 2 cut(s) | 446, 2442 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 32, 2954, 2986 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1332, 1515, 2232 |
| AspA2I | CCTAGG | 1 cut(s) | 1018 |
| AspLEI | GCGC | 3 cut(s) | 96, 932, 1084 |
| AspS9I | GGNCC | 8 cut(s) | 373, 974, 1585, 1765, 1847, 1848, 2796, 3072 |
| AsuHPI | GGTGA | 5 cut(s) | 395, 856, 2498, 2535, 2671 |
| AsuII | TTCGAA | 1 cut(s) | 260 |
| AvaII | GGWCC | 4 cut(s) | 974, 1585, 1765, 2796 |
| AvrII | CCTAGG | 1 cut(s) | 1018 |
| AxyI | CCTNAGG | 1 cut(s) | 840 |
| BaeGI | GKGCMC | 1 cut(s) | 1851 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2121, 2154 |
| BanII | GRGCYC | 2 cut(s) | 1027, 1851 |
| BauI | CACGAG | 4 cut(s) | 600, 2325, 2469, 2965 |
| BbsI | GAAGAC | 4 cut(s) | 615, 645, 1503, 1924 |
| Bbv12I | GWGCWC | 1 cut(s) | 2662 |
| BbvI | GCAGC | 2 cut(s) | 458, 2429 |
| BccI | CCATC | 6 cut(s) | 485, 1706, 1810, 2149, 2563, 3033 |
| BceAI | ACGGC | 4 cut(s) | 689, 1872, 2187, 2607 |
| BciT130I | CCWGG | 4 cut(s) | 377, 749, 2036, 2510 |
| BciVI | GTATCC | 1 cut(s) | 82 |
| BclI | TGATCA | 3 cut(s) | 1066, 1147, 1938 |
| BcoDI | GTCTC | 3 cut(s) | 2007, 2112, 2443 |
| BcuI | ACTAGT | 1 cut(s) | 1864 |
| BfaI | CTAG | 3 cut(s) | 1019, 1865, 2186 |
| BfoI | RGCGCY | 1 cut(s) | 1085 |
| BfrI | CTTAAG | 1 cut(s) | 617 |
| BfuAI | ACCTGC | 2 cut(s) | 1413, 2690 |
| BfuI | GTATCC | 1 cut(s) | 82 |
| BglII | AGATCT | 1 cut(s) | 288 |
| BisI | GCNGC | 3 cut(s) | 447, 2443, 2921 |
| BlnI | CCTAGG | 1 cut(s) | 1018 |
| BlsI | GCNGC | 3 cut(s) | 448, 2444, 2922 |
| Bme1390I | CCNGG | 4 cut(s) | 377, 749, 2036, 2510 |
| Bme18I | GGWCC | 4 cut(s) | 974, 1585, 1765, 2796 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2020 |
| BmgT120I | GGNCC | 8 cut(s) | 373, 974, 1585, 1765, 1847, 1848, 2796, 3072 |
| BmiI | GGNNCC | 5 cut(s) | 22, 1766, 1849, 1860, 2557 |
| BmrFI | CCNGG | 4 cut(s) | 377, 749, 2036, 2510 |
| BmsI | GCATC | 8 cut(s) | 263, 470, 1417, 1470, 1482, 1628, 1632, 2907 |
| BpiI | GAAGAC | 4 cut(s) | 615, 645, 1503, 1924 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 3 cut(s) | 975, 2192, 2872 |
| Bpu14I | TTCGAA | 1 cut(s) | 260 |
| BpuEI | CTTGAG | 2 cut(s) | 1610, 2009 |
| Bsa29I | ATCGAT | 1 cut(s) | 1710 |
| BsaAI | YACGTR | 1 cut(s) | 2114 |
| BsaJI | CCNNGG | 1 cut(s) | 1018 |
| BsaWI | WCCGGW | 2 cut(s) | 583, 2242 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 774, 804, 1722, 1752, 2890, 2920 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 17, 127, 898, 1762, 2520, 2552 |
| Bse1I | ACTGG | 6 cut(s) | 1756, 1778, 2095, 2443, 2678, 2855 |
| Bse21I | CCTNAGG | 1 cut(s) | 840 |
| BseBI | CCWGG | 4 cut(s) | 377, 749, 2036, 2510 |
| BseCI | ATCGAT | 1 cut(s) | 1710 |
| BseDI | CCNNGG | 1 cut(s) | 1018 |
| BseGI | GGATG | 9 cut(s) | 280, 1129, 1231, 1326, 1408, 1485, 1579, 1643, 2922 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 17, 127, 898, 1762, 2520, 2552 |
| BseMII | CTCAG | 2 cut(s) | 62, 2088 |
| BseNI | ACTGG | 6 cut(s) | 1756, 1778, 2095, 2443, 2678, 2855 |
| BseRI | GAGGAG | 2 cut(s) | 189, 2189 |
| BseSI | GKGCMC | 1 cut(s) | 1851 |
| BseXI | GCAGC | 2 cut(s) | 458, 2429 |
| BseYI | CCCAGC | 1 cut(s) | 2997 |
| BsgI | GTGCAG | 2 cut(s) | 1820, 1837 |
| Bsh1236I | CGCG | 3 cut(s) | 94, 932, 1581 |
| Bsh1285I | CGRYCG | 2 cut(s) | 85, 1796 |
| BshVI | ATCGAT | 1 cut(s) | 1710 |
| BsiEI | CGRYCG | 2 cut(s) | 85, 1796 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2662 |
| BsiSI | CCGG | 4 cut(s) | 584, 1778, 2243, 2446 |
| BslFI | GGGAC | 3 cut(s) | 1513, 2204, 2765 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 17, 127, 898, 1762, 2520, 2552 |
| BsmAI | GTCTC | 3 cut(s) | 2007, 2112, 2443 |
| BsmFI | GGGAC | 3 cut(s) | 1513, 2204, 2765 |
| Bsp119I | TTCGAA | 1 cut(s) | 260 |
| Bsp120I | GGGCCC | 1 cut(s) | 1847 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1027, 1851, 2662 |
| Bsp68I | TCGCGA | 1 cut(s) | 1581 |
| BspACI | CCGC | 8 cut(s) | 33, 81, 932, 1668, 1728, 2552, 2663, 2921 |
| BspCNI | CTCAG | 2 cut(s) | 63, 2087 |
| BspDI | ATCGAT | 1 cut(s) | 1710 |
| BspFNI | CGCG | 3 cut(s) | 94, 932, 1581 |
| BspLI | GGNNCC | 5 cut(s) | 22, 1766, 1849, 1860, 2557 |
| BspMI | ACCTGC | 2 cut(s) | 1413, 2690 |
| BspPI | GGATC | 5 cut(s) | 223, 638, 942, 1323, 2046 |
| BspQI | GCTCTTC | 2 cut(s) | 1091, 2703 |
| BspT104I | TTCGAA | 1 cut(s) | 260 |
| BspTI | CTTAAG | 1 cut(s) | 617 |
| BsrI | ACTGG | 6 cut(s) | 1756, 1778, 2095, 2443, 2678, 2855 |
| BssECI | CCNNGG | 1 cut(s) | 1018 |
| BssNAI | GTATAC | 1 cut(s) | 1832 |
| BssSI | CACGAG | 4 cut(s) | 600, 2325, 2469, 2965 |
| BssT1I | CCWWGG | 1 cut(s) | 1018 |
| Bst1107I | GTATAC | 1 cut(s) | 1832 |
| Bst2BI | CACGAG | 4 cut(s) | 600, 2325, 2469, 2965 |
| Bst2UI | CCWGG | 4 cut(s) | 377, 749, 2036, 2510 |
| Bst4CI | ACNGT | 4 cut(s) | 351, 871, 2547, 2890 |
| Bst6I | CTCTTC | 5 cut(s) | 31, 1091, 2568, 2703, 3043 |
| BstAFI | CTTAAG | 1 cut(s) | 617 |
| BstBAI | YACGTR | 1 cut(s) | 2114 |
| BstBI | TTCGAA | 1 cut(s) | 260 |
| BstF5I | GGATG | 9 cut(s) | 280, 1129, 1231, 1326, 1408, 1485, 1579, 1643, 2922 |
| BstFNI | CGCG | 3 cut(s) | 94, 932, 1581 |
| BstH2I | RGCGCY | 1 cut(s) | 1085 |
| BstHHI | GCGC | 3 cut(s) | 96, 932, 1084 |
| BstMAI | GTCTC | 3 cut(s) | 2007, 2112, 2443 |
| BstMCI | CGRYCG | 2 cut(s) | 85, 1796 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 251 |
| BstNI | CCWGG | 4 cut(s) | 377, 749, 2036, 2510 |
| BstNSI | RCATGY | 3 cut(s) | 1350, 1843, 2497 |
| BstSCI | CCNGG | 4 cut(s) | 375, 747, 2034, 2508 |
| BstSLI | GKGCMC | 1 cut(s) | 1851 |
| BstUI | CGCG | 3 cut(s) | 94, 932, 1581 |
| BstV1I | GCAGC | 2 cut(s) | 458, 2429 |
| BstV2I | GAAGAC | 4 cut(s) | 615, 645, 1503, 1924 |
| BstX2I | RGATCY | 2 cut(s) | 288, 2038 |
| BstYI | RGATCY | 2 cut(s) | 288, 2038 |
| BstZ17I | GTATAC | 1 cut(s) | 1832 |
| Bsu15I | ATCGAT | 1 cut(s) | 1710 |
| Bsu36I | CCTNAGG | 1 cut(s) | 840 |
| BsuI | GTATCC | 1 cut(s) | 82 |
| BsuTUI | ATCGAT | 1 cut(s) | 1710 |
| BtsCI | GGATG | 9 cut(s) | 280, 1129, 1231, 1326, 1408, 1485, 1579, 1643, 2922 |
| BtsI | GCAGTG | 1 cut(s) | 2049 |
| BtsIMutI | CAGTG | 3 cut(s) | 867, 2049, 2088 |
| BtuMI | TCGCGA | 1 cut(s) | 1581 |
| BveI | ACCTGC | 2 cut(s) | 1413, 2690 |
| CfoI | GCGC | 3 cut(s) | 96, 932, 1084 |
| Cfr13I | GGNCC | 8 cut(s) | 373, 974, 1585, 1765, 1847, 1848, 2796, 3072 |
| ClaI | ATCGAT | 1 cut(s) | 1710 |
| Csp6I | GTAC | 2 cut(s) | 1388, 2138 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2788, 2823 |
| CviQI | GTAC | 2 cut(s) | 1388, 2138 |
| DraI | TTTAAA | 2 cut(s) | 1357, 1705 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2020 |
| EaeI | YGGCCR | 3 cut(s) | 1775, 2200, 2511 |
| Eam1104I | CTCTTC | 5 cut(s) | 31, 1091, 2568, 2703, 3043 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2020 |
| EarI | CTCTTC | 5 cut(s) | 31, 1091, 2568, 2703, 3043 |
| EciI | GGCGGA | 1 cut(s) | 1683 |
| Eco130I | CCWWGG | 1 cut(s) | 1018 |
| Eco147I | AGGCCT | 1 cut(s) | 1445 |
| Eco24I | GRGCYC | 2 cut(s) | 1027, 1851 |
| Eco32I | GATATC | 2 cut(s) | 537, 1656 |
| Eco47I | GGWCC | 4 cut(s) | 974, 1585, 1765, 2796 |
| Eco47III | AGCGCT | 1 cut(s) | 1083 |
| Eco57I | CTGAAG | 3 cut(s) | 61, 896, 2649 |
| Eco81I | CCTNAGG | 1 cut(s) | 840 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1585, 1765, 1848 |
| EcoRI | GAATTC | 2 cut(s) | 1885, 2633 |
| EcoRII | CCWGG | 4 cut(s) | 375, 747, 2034, 2508 |
| EcoRV | GATATC | 2 cut(s) | 537, 1656 |
| EcoT14I | CCWWGG | 1 cut(s) | 1018 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 1485 |
| EcoT38I | GRGCYC | 2 cut(s) | 1027, 1851 |
| ErhI | CCWWGG | 1 cut(s) | 1018 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 254, 286, 404, 436, 600, 632, 1320, 1352 |
| FaqI | GGGAC | 3 cut(s) | 1513, 2204, 2765 |
| FauI | CCCGC | 1 cut(s) | 2545 |
| FauNDI | CATATG | 1 cut(s) | 778 |
| FbaI | TGATCA | 3 cut(s) | 1066, 1147, 1938 |
| FblI | GTMKAC | 1 cut(s) | 1831 |
| Fnu4HI | GCNGC | 3 cut(s) | 447, 2443, 2921 |
| FokI | GGATG | 9 cut(s) | 287, 1136, 1238, 1333, 1395, 1492, 1586, 1650, 2929 |
| FriOI | GRGCYC | 2 cut(s) | 1027, 1851 |
| Fsp4HI | GCNGC | 3 cut(s) | 447, 2443, 2921 |
| FspBI | CTAG | 3 cut(s) | 1019, 1865, 2186 |
| GlaI | GCGC | 3 cut(s) | 95, 931, 1083 |
| GluI | GCNGC | 3 cut(s) | 447, 2443, 2921 |
| GsaI | CCCAGC | 1 cut(s) | 3001 |
| GsuI | CTGGAG | 3 cut(s) | 975, 2192, 2872 |
| HaeII | RGCGCY | 1 cut(s) | 1085 |
| HapII | CCGG | 4 cut(s) | 584, 1778, 2243, 2446 |
| HhaI | GCGC | 3 cut(s) | 96, 932, 1084 |
| Hin6I | GCGC | 3 cut(s) | 94, 930, 1082 |
| HinP1I | GCGC | 3 cut(s) | 94, 930, 1082 |
| HincII | GTYRAC | 4 cut(s) | 133, 1870, 2491, 2601 |
| HindII | GTYRAC | 4 cut(s) | 133, 1870, 2491, 2601 |
| HindIII | AAGCTT | 3 cut(s) | 1074, 1672, 1910 |
| HpaI | GTTAAC | 1 cut(s) | 133 |
| HpaII | CCGG | 4 cut(s) | 584, 1778, 2243, 2446 |
| HphI | GGTGA | 5 cut(s) | 395, 856, 2498, 2535, 2671 |
| Hpy188I | TCNGA | 8 cut(s) | 20, 72, 355, 1320, 2227, 2317, 2629, 2796 |
| Hpy99I | CGWCG | 1 cut(s) | 355 |
| HpyAV | CCTTC | 9 cut(s) | 206, 364, 421, 436, 854, 1111, 1658, 3020, 3026 |
| HpyCH4III | ACNGT | 4 cut(s) | 351, 871, 2547, 2890 |
| HpyCH4IV | ACGT | 4 cut(s) | 1032, 1159, 2113, 2859 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 251 |
| HpySE526I | ACGT | 4 cut(s) | 1032, 1159, 2113, 2859 |
| HspAI | GCGC | 3 cut(s) | 94, 930, 1082 |
| Ksp22I | TGATCA | 3 cut(s) | 1066, 1147, 1938 |
| KspAI | GTTAAC | 1 cut(s) | 133 |
| LguI | GCTCTTC | 2 cut(s) | 1091, 2703 |
| LmnI | GCTCC | 5 cut(s) | 20, 193, 1864, 2176, 2665 |
| Lsp1109I | GCAGC | 2 cut(s) | 458, 2429 |
| LweI | GCATC | 8 cut(s) | 263, 470, 1417, 1470, 1482, 1628, 1632, 2907 |
| MaeI | CTAG | 3 cut(s) | 1019, 1865, 2186 |
| MaeII | ACGT | 4 cut(s) | 1032, 1159, 2113, 2859 |
| MaeIII | GTNAC | 9 cut(s) | 1298, 1361, 1400, 1718, 1788, 2206, 2641, 2855, 2884 |
| MfeI | CAATTG | 2 cut(s) | 390, 2746 |
| MflI | RGATCY | 2 cut(s) | 288, 2038 |
| MhlI | GDGCHC | 3 cut(s) | 1027, 1851, 2662 |
| MlyI | GAGTC | 5 cut(s) | 1535, 2282, 2445, 2596, 3012 |
| MmeI | TCCRAC | 8 cut(s) | 333, 419, 568, 1641, 2059, 2240, 2409, 2458 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 1485 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1332, 1515, 2232 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1478, 1842 |
| MspA1I | CMGCKG | 1 cut(s) | 81 |
| MspCI | CTTAAG | 1 cut(s) | 617 |
| MspI | CCGG | 4 cut(s) | 584, 1778, 2243, 2446 |
| MspR9I | CCNGG | 4 cut(s) | 377, 749, 2036, 2510 |
| MunI | CAATTG | 2 cut(s) | 390, 2746 |
| MvaI | CCWGG | 4 cut(s) | 377, 749, 2036, 2510 |
| MvnI | CGCG | 3 cut(s) | 94, 932, 1581 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 251 |
| NdeI | CATATG | 1 cut(s) | 778 |
| NlaIV | GGNNCC | 5 cut(s) | 22, 1766, 1849, 1860, 2557 |
| NmeAIII | GCCGAG | 1 cut(s) | 2539 |
| NmuCI | GTSAC | 1 cut(s) | 1400 |
| NruI | TCGCGA | 1 cut(s) | 1581 |
| NsiI | ATGCAT | 2 cut(s) | 256, 1485 |
| NspI | RCATGY | 3 cut(s) | 1350, 1843, 2497 |
| NspV | TTCGAA | 1 cut(s) | 260 |
| OliI | CACNNNNGTG | 1 cut(s) | 1842 |
| PaqCI | CACCTGC | 1 cut(s) | 2690 |
| PceI | AGGCCT | 1 cut(s) | 1445 |
| PciSI | GCTCTTC | 2 cut(s) | 1091, 2703 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1793 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1332, 1515, 2232 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 898 |
| PkrI | GCNGC | 3 cut(s) | 448, 2444, 2922 |
| Ple19I | CGATCG | 1 cut(s) | 1796 |
| PleI | GAGTC | 5 cut(s) | 1534, 2282, 2445, 2596, 3011 |
| PpsI | GAGTC | 5 cut(s) | 1534, 2282, 2445, 2596, 3011 |
| Ppu21I | YACGTR | 1 cut(s) | 2114 |
| PpuMI | RGGWCCY | 2 cut(s) | 1585, 1765 |
| Psp5II | RGGWCCY | 2 cut(s) | 1585, 1765 |
| Psp6I | CCWGG | 4 cut(s) | 375, 747, 2034, 2508 |
| PspFI | CCCAGC | 1 cut(s) | 2997 |
| PspGI | CCWGG | 4 cut(s) | 375, 747, 2034, 2508 |
| PspN4I | GGNNCC | 5 cut(s) | 22, 1766, 1849, 1860, 2557 |
| PspOMI | GGGCCC | 1 cut(s) | 1847 |
| PspPI | GGNCC | 8 cut(s) | 373, 974, 1585, 1765, 1847, 1848, 2796, 3072 |
| PspPPI | RGGWCCY | 2 cut(s) | 1585, 1765 |
| PsuI | RGATCY | 2 cut(s) | 288, 2038 |
| PvuI | CGATCG | 1 cut(s) | 1796 |
| RruI | TCGCGA | 1 cut(s) | 1581 |
| RsaI | GTAC | 2 cut(s) | 1389, 2139 |
| RsaNI | GTAC | 2 cut(s) | 1388, 2138 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1478, 1842 |
| SapI | GCTCTTC | 2 cut(s) | 1091, 2703 |
| SatI | GCNGC | 3 cut(s) | 447, 2443, 2921 |
| Sau96I | GGNCC | 8 cut(s) | 373, 974, 1585, 1765, 1847, 1848, 2796, 3072 |
| SchI | GAGTC | 5 cut(s) | 1535, 2282, 2445, 2596, 3012 |
| ScrFI | CCNGG | 4 cut(s) | 377, 749, 2036, 2510 |
| SduI | GDGCHC | 3 cut(s) | 1027, 1851, 2662 |
| SfaNI | GCATC | 8 cut(s) | 263, 470, 1417, 1470, 1482, 1628, 1632, 2907 |
| SfuI | TTCGAA | 1 cut(s) | 260 |
| SinI | GGWCC | 4 cut(s) | 974, 1585, 1765, 2796 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1478, 1842 |
| SmlI | CTYRAG | 4 cut(s) | 12, 617, 1589, 1988 |
| SmoI | CTYRAG | 4 cut(s) | 12, 617, 1589, 1988 |
| SpeI | ACTAGT | 1 cut(s) | 1864 |
| SseBI | AGGCCT | 1 cut(s) | 1445 |
| SsiI | CCGC | 8 cut(s) | 33, 81, 932, 1668, 1728, 2552, 2663, 2921 |
| SspMI | CTAG | 3 cut(s) | 1019, 1865, 2186 |
| StuI | AGGCCT | 1 cut(s) | 1445 |
| StyD4I | CCNGG | 4 cut(s) | 375, 747, 2034, 2508 |
| StyI | CCWWGG | 1 cut(s) | 1018 |
| TaaI | ACNGT | 4 cut(s) | 351, 871, 2547, 2890 |
| TaiI | ACGT | 4 cut(s) | 1035, 1162, 2116, 2862 |
| TaqI | TCGA | 6 cut(s) | 201, 260, 1710, 2144, 2938, 3015 |
| TaqII | GACCGA | 1 cut(s) | 2411 |
| TatI | WGTACW | 1 cut(s) | 1387 |
| TauI | GCSGC | 1 cut(s) | 2923 |
| TscAI | CASTG | 3 cut(s) | 874, 2056, 2095 |
| TseFI | GTSAC | 1 cut(s) | 1400 |
| TseI | GCWGC | 2 cut(s) | 446, 2442 |
| Tsp45I | GTSAC | 1 cut(s) | 1400 |
| TspGWI | ACGGA | 4 cut(s) | 1167, 1622, 1817, 2939 |
| TspRI | CASTG | 3 cut(s) | 874, 2056, 2095 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 898 |
| Vha464I | CTTAAG | 1 cut(s) | 617 |
| VpaK11BI | GGWCC | 4 cut(s) | 974, 1585, 1765, 2796 |
| XceI | RCATGY | 3 cut(s) | 1350, 1843, 2497 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2566 |
| XmaJI | CCTAGG | 1 cut(s) | 1018 |
| XmiI | GTMKAC | 1 cut(s) | 1831 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1332, 1515, 2232 |
| XspI | CTAG | 3 cut(s) | 1019, 1865, 2186 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 1485 |