TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 112 - 180 | 1.7e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 373 - 415 | 4.5e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 406 - 489 | 2.7e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 443 - 617 | 6.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 430 |
| Acc65I | GGTACC | 1 cut(s) | 626 |
| AccB1I | GGYRCC | 2 cut(s) | 626, 1470 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 85 |
| AccBSI | CCGCTC | 1 cut(s) | 1506 |
| AccI | GTMKAC | 3 cut(s) | 1116, 2340, 2616 |
| AccII | CGCG | 3 cut(s) | 1181, 1319, 2414 |
| AciI | CCGC | 3 cut(s) | 155, 1418, 1506 |
| AclWI | GGATC | 2 cut(s) | 1571, 2490 |
| AcoI | YGGCCR | 1 cut(s) | 2466 |
| AcsI | RAATTY | 6 cut(s) | 339, 949, 1615, 1736, 2139, 2151 |
| AcuI | CTGAAG | 2 cut(s) | 618, 2186 |
| AfaI | GTAC | 2 cut(s) | 159, 628 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 85, 146, 1480, 1605, 2426 |
| AflIII | ACRYGT | 6 cut(s) | 607, 1111, 1179, 1317, 2343, 2354 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1960 |
| AjiI | CACGTC | 1 cut(s) | 1112 |
| AjnI | CCWGG | 8 cut(s) | 549, 799, 1579, 1824, 1891, 2044, 2214, 2463 |
| AleI | CACNNNNGTG | 1 cut(s) | 2102 |
| Alw21I | GWGCWC | 1 cut(s) | 447 |
| Alw26I | GTCTC | 5 cut(s) | 898, 997, 1022, 1721, 1779 |
| AlwI | GGATC | 2 cut(s) | 1571, 2490 |
| Ama87I | CYCGRG | 2 cut(s) | 104, 2422 |
| AoxI | GGCC | 4 cut(s) | 456, 731, 2047, 2466 |
| ApeKI | GCWGC | 7 cut(s) | 257, 589, 592, 1438, 2570, 2685, 2750 |
| ApoI | RAATTY | 6 cut(s) | 339, 949, 1615, 1736, 2139, 2151 |
| AseI | ATTAAT | 3 cut(s) | 60, 792, 1554 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 342, 1533 |
| Asp718I | GGTACC | 1 cut(s) | 626 |
| AspA2I | CCTAGG | 1 cut(s) | 2156 |
| AspS9I | GGNCC | 4 cut(s) | 76, 137, 457, 2458 |
| AsuC2I | CCSGG | 2 cut(s) | 2054, 2608 |
| AsuHPI | GGTGA | 6 cut(s) | 383, 628, 1495, 1513, 2099, 2507 |
| AvaI | CYCGRG | 2 cut(s) | 104, 2422 |
| AvaII | GGWCC | 3 cut(s) | 76, 137, 2458 |
| AvrII | CCTAGG | 1 cut(s) | 2156 |
| BaeGI | GKGCMC | 1 cut(s) | 1475 |
| BalI | TGGCCA | 1 cut(s) | 2468 |
| BanI | GGYRCC | 2 cut(s) | 626, 1470 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 246, 278 |
| BauI | CACGAG | 1 cut(s) | 2508 |
| BbsI | GAAGAC | 3 cut(s) | 185, 2505, 2724 |
| Bbv12I | GWGCWC | 1 cut(s) | 447 |
| BbvI | GCAGC | 7 cut(s) | 244, 579, 601, 1425, 2582, 2672, 2762 |
| BccI | CCATC | 5 cut(s) | 140, 766, 1271, 1963, 2627 |
| BceAI | ACGGC | 1 cut(s) | 1123 |
| BciT130I | CCWGG | 8 cut(s) | 551, 801, 1581, 1826, 1893, 2046, 2216, 2465 |
| BciVI | GTATCC | 1 cut(s) | 824 |
| BclI | TGATCA | 2 cut(s) | 2332, 2542 |
| BcnI | CCSGG | 2 cut(s) | 2054, 2608 |
| BcoDI | GTCTC | 5 cut(s) | 898, 997, 1022, 1721, 1779 |
| BfaI | CTAG | 8 cut(s) | 401, 474, 503, 1020, 1025, 1457, 2157, 2375 |
| BfmI | CTRYAG | 1 cut(s) | 2574 |
| BfuAI | ACCTGC | 1 cut(s) | 430 |
| BfuI | GTATCC | 1 cut(s) | 824 |
| BglII | AGATCT | 1 cut(s) | 931 |
| BisI | GCNGC | 8 cut(s) | 258, 590, 593, 1418, 1439, 2571, 2686, 2751 |
| BlnI | CCTAGG | 1 cut(s) | 2156 |
| BlsI | GCNGC | 8 cut(s) | 259, 591, 594, 1419, 1440, 2572, 2687, 2752 |
| Bme18I | GGWCC | 3 cut(s) | 76, 137, 2458 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1960 |
| BmeT110I | CYCGRG | 2 cut(s) | 104, 2422 |
| BmgBI | CACGTC | 1 cut(s) | 1112 |
| BmgT120I | GGNCC | 4 cut(s) | 76, 137, 457, 2458 |
| BmiI | GGNNCC | 5 cut(s) | 628, 1472, 1702, 2459, 2658 |
| BmsI | GCATC | 8 cut(s) | 100, 480, 588, 847, 1004, 1533, 1737, 2588 |
| BpiI | GAAGAC | 3 cut(s) | 185, 2505, 2724 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 282, 314 |
| BpmI | CTGGAG | 2 cut(s) | 708, 1875 |
| BpuEI | CTTGAG | 3 cut(s) | 171, 736, 2684 |
| BpuMI | CCSGG | 2 cut(s) | 2054, 2608 |
| Bsa29I | ATCGAT | 2 cut(s) | 1058, 1077 |
| BsaAI | YACGTR | 1 cut(s) | 2344 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1276 |
| BsaJI | CCNNGG | 8 cut(s) | 549, 800, 1096, 1302, 2156, 2214, 2421, 2607 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 85, 146, 1480, 1605, 2426 |
| Bse118I | RCCGGY | 1 cut(s) | 2003 |
| Bse1I | ACTGG | 5 cut(s) | 48, 1485, 1704, 1878, 1938 |
| Bse3DI | GCAATG | 3 cut(s) | 351, 1570, 2760 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1276 |
| BseBI | CCWGG | 8 cut(s) | 551, 801, 1581, 1826, 1893, 2046, 2216, 2465 |
| BseCI | ATCGAT | 2 cut(s) | 1058, 1077 |
| BseDI | CCNNGG | 8 cut(s) | 549, 800, 1096, 1302, 2156, 2214, 2421, 2607 |
| BseGI | GGATG | 4 cut(s) | 328, 495, 1019, 1834 |
| BseJI | GATNNNNATC | 1 cut(s) | 1276 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 85, 146, 1480, 1605, 2426 |
| BseMI | GCAATG | 3 cut(s) | 351, 1570, 2760 |
| BseMII | CTCAG | 1 cut(s) | 2163 |
| BseNI | ACTGG | 5 cut(s) | 48, 1485, 1704, 1878, 1938 |
| BseSI | GKGCMC | 1 cut(s) | 1475 |
| BseXI | GCAGC | 7 cut(s) | 244, 579, 601, 1425, 2582, 2672, 2762 |
| BseYI | CCCAGC | 2 cut(s) | 1599, 1720 |
| BsgI | GTGCAG | 3 cut(s) | 608, 1545, 2671 |
| Bsh1236I | CGCG | 3 cut(s) | 1181, 1319, 2414 |
| BshFI | GGCC | 4 cut(s) | 458, 733, 2049, 2468 |
| BshNI | GGYRCC | 2 cut(s) | 626, 1470 |
| BshVI | ATCGAT | 2 cut(s) | 1058, 1077 |
| BsiHKAI | GWGCWC | 1 cut(s) | 447 |
| BsiHKCI | CYCGRG | 2 cut(s) | 104, 2422 |
| BsiSI | CCGG | 3 cut(s) | 2004, 2054, 2607 |
| BslFI | GGGAC | 1 cut(s) | 896 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 85, 146, 1480, 1605, 2426 |
| BsmAI | GTCTC | 5 cut(s) | 898, 997, 1022, 1721, 1779 |
| BsmFI | GGGAC | 1 cut(s) | 896 |
| BsmI | GAATGC | 2 cut(s) | 964, 1631 |
| BsnI | GGCC | 4 cut(s) | 458, 733, 2049, 2468 |
| BsoBI | CYCGRG | 2 cut(s) | 104, 2422 |
| Bsp1286I | GDGCHC | 2 cut(s) | 447, 1475 |
| Bsp143I | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| BspACI | CCGC | 3 cut(s) | 155, 1418, 1506 |
| BspANI | GGCC | 4 cut(s) | 458, 733, 2049, 2468 |
| BspCNI | CTCAG | 1 cut(s) | 2164 |
| BspDI | ATCGAT | 2 cut(s) | 1058, 1077 |
| BspFNI | CGCG | 3 cut(s) | 1181, 1319, 2414 |
| BspHI | TCATGA | 4 cut(s) | 94, 2278, 2329, 2629 |
| BspLI | GGNNCC | 5 cut(s) | 628, 1472, 1702, 2459, 2658 |
| BspMI | ACCTGC | 1 cut(s) | 430 |
| BspPI | GGATC | 2 cut(s) | 1571, 2490 |
| BspT107I | GGYRCC | 2 cut(s) | 626, 1470 |
| BsrBI | CCGCTC | 1 cut(s) | 1506 |
| BsrDI | GCAATG | 3 cut(s) | 351, 1570, 2760 |
| BsrFI | RCCGGY | 1 cut(s) | 2003 |
| BsrI | ACTGG | 5 cut(s) | 48, 1485, 1704, 1878, 1938 |
| BssAI | RCCGGY | 1 cut(s) | 2003 |
| BssECI | CCNNGG | 8 cut(s) | 549, 800, 1096, 1302, 2156, 2214, 2421, 2607 |
| BssMI | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| BssNAI | GTATAC | 1 cut(s) | 2341 |
| BssSI | CACGAG | 1 cut(s) | 2508 |
| BssT1I | CCWWGG | 3 cut(s) | 1096, 1302, 2156 |
| Bst1107I | GTATAC | 1 cut(s) | 2341 |
| Bst2BI | CACGAG | 1 cut(s) | 2508 |
| Bst2UI | CCWGG | 8 cut(s) | 551, 801, 1581, 1826, 1893, 2046, 2216, 2465 |
| Bst6I | CTCTTC | 2 cut(s) | 1539, 2472 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 499, 754 |
| BstBAI | YACGTR | 1 cut(s) | 2344 |
| BstC8I | GCNNGC | 3 cut(s) | 1726, 2001, 2005 |
| BstDEI | CTNAG | 4 cut(s) | 426, 866, 919, 2172 |
| BstF5I | GGATG | 4 cut(s) | 328, 495, 1019, 1834 |
| BstFNI | CGCG | 3 cut(s) | 1181, 1319, 2414 |
| BstKTI | GATC | 7 cut(s) | 934, 1579, 2335, 2389, 2485, 2545, 2626 |
| BstMAI | GTCTC | 5 cut(s) | 898, 997, 1022, 1721, 1779 |
| BstMBI | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 499, 754, 1740, 2558, 2567, 2576 |
| BstNI | CCWGG | 8 cut(s) | 551, 801, 1581, 1826, 1893, 2046, 2216, 2465 |
| BstNSI | RCATGY | 7 cut(s) | 360, 611, 646, 1728, 2003, 2021, 2358 |
| BstSFI | CTRYAG | 1 cut(s) | 2574 |
| BstSLI | GKGCMC | 1 cut(s) | 1475 |
| BstUI | CGCG | 3 cut(s) | 1181, 1319, 2414 |
| BstV1I | GCAGC | 7 cut(s) | 244, 579, 601, 1425, 2582, 2672, 2762 |
| BstV2I | GAAGAC | 3 cut(s) | 185, 2505, 2724 |
| BstX2I | RGATCY | 1 cut(s) | 931 |
| BstYI | RGATCY | 1 cut(s) | 931 |
| BstZ17I | GTATAC | 1 cut(s) | 2341 |
| Bsu15I | ATCGAT | 2 cut(s) | 1058, 1077 |
| BsuI | GTATCC | 1 cut(s) | 824 |
| BsuRI | GGCC | 4 cut(s) | 458, 733, 2049, 2468 |
| BsuTUI | ATCGAT | 2 cut(s) | 1058, 1077 |
| BtrI | CACGTC | 1 cut(s) | 1112 |
| BtsCI | GGATG | 4 cut(s) | 328, 495, 1019, 1834 |
| BtsIMutI | CAGTG | 1 cut(s) | 1429 |
| BveI | ACCTGC | 1 cut(s) | 430 |
| Cac8I | GCNNGC | 3 cut(s) | 1726, 2001, 2005 |
| CciI | TCATGA | 4 cut(s) | 94, 2278, 2329, 2629 |
| Cfr10I | RCCGGY | 1 cut(s) | 2003 |
| Cfr13I | GGNCC | 4 cut(s) | 76, 137, 457, 2458 |
| ClaI | ATCGAT | 2 cut(s) | 1058, 1077 |
| CseI | GACGC | 6 cut(s) | 687, 1170, 1187, 1308, 1325, 2567 |
| Csp6I | GTAC | 2 cut(s) | 158, 627 |
| CviQI | GTAC | 2 cut(s) | 158, 627 |
| DdeI | CTNAG | 4 cut(s) | 426, 866, 919, 2172 |
| DpnI | GATC | 7 cut(s) | 933, 1578, 2334, 2388, 2484, 2544, 2625 |
| DpnII | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| DraI | TTTAAA | 1 cut(s) | 130 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1960 |
| EaeI | YGGCCR | 1 cut(s) | 2466 |
| Eam1104I | CTCTTC | 2 cut(s) | 1539, 2472 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1960 |
| EarI | CTCTTC | 2 cut(s) | 1539, 2472 |
| Eco130I | CCWWGG | 3 cut(s) | 1096, 1302, 2156 |
| Eco147I | AGGCCT | 1 cut(s) | 2049 |
| Eco32I | GATATC | 1 cut(s) | 1086 |
| Eco47I | GGWCC | 3 cut(s) | 76, 137, 2458 |
| Eco57I | CTGAAG | 2 cut(s) | 618, 2186 |
| Eco88I | CYCGRG | 2 cut(s) | 104, 2422 |
| EcoO109I | RGGNCCY | 1 cut(s) | 457 |
| EcoRII | CCWGG | 8 cut(s) | 549, 799, 1579, 1824, 1891, 2044, 2214, 2463 |
| EcoRV | GATATC | 1 cut(s) | 1086 |
| EcoT14I | CCWWGG | 3 cut(s) | 1096, 1302, 2156 |
| EcoT22I | ATGCAT | 2 cut(s) | 495, 1730 |
| ErhI | CCWWGG | 3 cut(s) | 1096, 1302, 2156 |
| FaqI | GGGAC | 1 cut(s) | 896 |
| FbaI | TGATCA | 2 cut(s) | 2332, 2542 |
| FblI | GTMKAC | 3 cut(s) | 1116, 2340, 2616 |
| Fnu4HI | GCNGC | 8 cut(s) | 258, 590, 593, 1418, 1439, 2571, 2686, 2751 |
| FokI | GGATG | 4 cut(s) | 335, 502, 1026, 1841 |
| Fsp4HI | GCNGC | 8 cut(s) | 258, 590, 593, 1418, 1439, 2571, 2686, 2751 |
| FspBI | CTAG | 8 cut(s) | 401, 474, 503, 1020, 1025, 1457, 2157, 2375 |
| GluI | GCNGC | 8 cut(s) | 258, 590, 593, 1418, 1439, 2571, 2686, 2751 |
| GsaI | CCCAGC | 2 cut(s) | 1603, 1724 |
| GsuI | CTGGAG | 2 cut(s) | 708, 1875 |
| HaeIII | GGCC | 4 cut(s) | 458, 733, 2049, 2468 |
| HapII | CCGG | 3 cut(s) | 2004, 2054, 2607 |
| HgaI | GACGC | 6 cut(s) | 687, 1170, 1187, 1308, 1325, 2567 |
| HincII | GTYRAC | 2 cut(s) | 1117, 2760 |
| HindII | GTYRAC | 2 cut(s) | 1117, 2760 |
| HindIII | AAGCTT | 1 cut(s) | 405 |
| HpaI | GTTAAC | 1 cut(s) | 2760 |
| HpaII | CCGG | 3 cut(s) | 2004, 2054, 2607 |
| HphI | GGTGA | 6 cut(s) | 383, 628, 1495, 1513, 2099, 2507 |
| Hpy166II | GTNNAC | 8 cut(s) | 1117, 1429, 1674, 2095, 2341, 2461, 2617, 2760 |
| Hpy8I | GTNNAC | 8 cut(s) | 1117, 1429, 1674, 2095, 2341, 2461, 2617, 2760 |
| HpyAV | CCTTC | 5 cut(s) | 328, 1081, 1218, 2161, 2639 |
| HpyCH4IV | ACGT | 2 cut(s) | 1111, 2343 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 499, 754, 1740, 2558, 2567, 2576 |
| HpyF3I | CTNAG | 4 cut(s) | 426, 866, 919, 2172 |
| HpySE526I | ACGT | 2 cut(s) | 1111, 2343 |
| KpnI | GGTACC | 1 cut(s) | 630 |
| KroI | GCCGGC | 1 cut(s) | 2003 |
| KroNI | GCCGGC | 1 cut(s) | 2005 |
| Ksp22I | TGATCA | 2 cut(s) | 2332, 2542 |
| KspAI | GTTAAC | 1 cut(s) | 2760 |
| Kzo9I | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| LmnI | GCTCC | 3 cut(s) | 88, 2371, 2445 |
| Lsp1109I | GCAGC | 7 cut(s) | 244, 579, 601, 1425, 2582, 2672, 2762 |
| LweI | GCATC | 8 cut(s) | 100, 480, 588, 847, 1004, 1533, 1737, 2588 |
| MaeI | CTAG | 8 cut(s) | 401, 474, 503, 1020, 1025, 1457, 2157, 2375 |
| MaeII | ACGT | 2 cut(s) | 1111, 2343 |
| MaeIII | GTNAC | 5 cut(s) | 308, 740, 806, 1483, 2248 |
| MalI | GATC | 7 cut(s) | 933, 1578, 2334, 2388, 2484, 2544, 2625 |
| MbiI | CCGCTC | 1 cut(s) | 1506 |
| MboI | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| MfeI | CAATTG | 5 cut(s) | 38, 1146, 1215, 1284, 1913 |
| MflI | RGATCY | 1 cut(s) | 931 |
| MhlI | GDGCHC | 2 cut(s) | 447, 1475 |
| MlsI | TGGCCA | 1 cut(s) | 2468 |
| MluI | ACGCGT | 2 cut(s) | 1179, 1317 |
| MluNI | TGGCCA | 1 cut(s) | 2468 |
| MlyI | GAGTC | 4 cut(s) | 814, 918, 1679, 2327 |
| MmeI | TCCRAC | 5 cut(s) | 808, 955, 1031, 1824, 2726 |
| Mox20I | TGGCCA | 1 cut(s) | 2468 |
| Mph1103I | ATGCAT | 2 cut(s) | 495, 1730 |
| MroNI | GCCGGC | 1 cut(s) | 2003 |
| MroXI | GAANNNNTTC | 2 cut(s) | 342, 1533 |
| MscI | TGGCCA | 1 cut(s) | 2468 |
| MslI | CAYNNNNRTG | 8 cut(s) | 488, 584, 641, 1955, 2102, 2334, 2490, 2631 |
| Msp20I | TGGCCA | 1 cut(s) | 2468 |
| MspA1I | CMGCKG | 3 cut(s) | 592, 1993, 2573 |
| MspI | CCGG | 3 cut(s) | 2004, 2054, 2607 |
| MunI | CAATTG | 5 cut(s) | 38, 1146, 1215, 1284, 1913 |
| Mva1269I | GAATGC | 2 cut(s) | 964, 1631 |
| MvaI | CCWGG | 8 cut(s) | 551, 801, 1581, 1826, 1893, 2046, 2216, 2465 |
| MvnI | CGCG | 3 cut(s) | 1181, 1319, 2414 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 499, 754, 1740, 2558, 2567, 2576 |
| NaeI | GCCGGC | 1 cut(s) | 2005 |
| NciI | CCSGG | 2 cut(s) | 2054, 2608 |
| NdeII | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| NgoMIV | GCCGGC | 1 cut(s) | 2003 |
| NlaIV | GGNNCC | 5 cut(s) | 628, 1472, 1702, 2459, 2658 |
| NmuCI | GTSAC | 4 cut(s) | 740, 806, 1483, 2248 |
| NsiI | ATGCAT | 2 cut(s) | 495, 1730 |
| NspI | RCATGY | 7 cut(s) | 360, 611, 646, 1728, 2003, 2021, 2358 |
| OliI | CACNNNNGTG | 1 cut(s) | 2102 |
| PaeI | GCATGC | 2 cut(s) | 1728, 2003 |
| PaeR7I | CTCGAG | 1 cut(s) | 104 |
| PagI | TCATGA | 4 cut(s) | 94, 2278, 2329, 2629 |
| PceI | AGGCCT | 1 cut(s) | 2049 |
| PciI | ACATGT | 2 cut(s) | 607, 2354 |
| PctI | GAATGC | 2 cut(s) | 964, 1631 |
| PdiI | GCCGGC | 1 cut(s) | 2005 |
| PdmI | GAANNNNTTC | 2 cut(s) | 342, 1533 |
| PflFI | GACNNNGTC | 1 cut(s) | 2317 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 85 |
| PfoI | TCCNGGA | 3 cut(s) | 1824, 1891, 2052 |
| PkrI | GCNGC | 8 cut(s) | 259, 591, 594, 1419, 1440, 2572, 2687, 2752 |
| PleI | GAGTC | 4 cut(s) | 813, 917, 1678, 2326 |
| PpsI | GAGTC | 4 cut(s) | 813, 917, 1678, 2326 |
| Ppu21I | YACGTR | 1 cut(s) | 2344 |
| PscI | ACATGT | 2 cut(s) | 607, 2354 |
| PshBI | ATTAAT | 3 cut(s) | 60, 792, 1554 |
| Psp6I | CCWGG | 8 cut(s) | 549, 799, 1579, 1824, 1891, 2044, 2214, 2463 |
| PspFI | CCCAGC | 2 cut(s) | 1599, 1720 |
| PspGI | CCWGG | 8 cut(s) | 549, 799, 1579, 1824, 1891, 2044, 2214, 2463 |
| PspN4I | GGNNCC | 5 cut(s) | 628, 1472, 1702, 2459, 2658 |
| PspPI | GGNCC | 4 cut(s) | 76, 137, 457, 2458 |
| PsuI | RGATCY | 1 cut(s) | 931 |
| PsyI | GACNNNGTC | 1 cut(s) | 2317 |
| PvuII | CAGCTG | 3 cut(s) | 592, 1993, 2573 |
| RsaI | GTAC | 2 cut(s) | 159, 628 |
| RsaNI | GTAC | 2 cut(s) | 158, 627 |
| RseI | CAYNNNNRTG | 8 cut(s) | 488, 584, 641, 1955, 2102, 2334, 2490, 2631 |
| SalI | GTCGAC | 1 cut(s) | 1115 |
| SatI | GCNGC | 8 cut(s) | 258, 590, 593, 1418, 1439, 2571, 2686, 2751 |
| Sau3AI | GATC | 7 cut(s) | 931, 1576, 2332, 2386, 2482, 2542, 2623 |
| Sau96I | GGNCC | 4 cut(s) | 76, 137, 457, 2458 |
| SchI | GAGTC | 4 cut(s) | 814, 918, 1679, 2327 |
| SduI | GDGCHC | 2 cut(s) | 447, 1475 |
| SfaNI | GCATC | 8 cut(s) | 100, 480, 588, 847, 1004, 1533, 1737, 2588 |
| SfcI | CTRYAG | 1 cut(s) | 2574 |
| Sfr274I | CTCGAG | 1 cut(s) | 104 |
| SinI | GGWCC | 3 cut(s) | 76, 137, 2458 |
| SlaI | CTCGAG | 1 cut(s) | 104 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 488, 584, 641, 1955, 2102, 2334, 2490, 2631 |
| SmlI | CTYRAG | 4 cut(s) | 104, 186, 715, 2663 |
| SmoI | CTYRAG | 4 cut(s) | 104, 186, 715, 2663 |
| SphI | GCATGC | 2 cut(s) | 1728, 2003 |
| SseBI | AGGCCT | 1 cut(s) | 2049 |
| SsiI | CCGC | 3 cut(s) | 155, 1418, 1506 |
| SspMI | CTAG | 8 cut(s) | 401, 474, 503, 1020, 1025, 1457, 2157, 2375 |
| StuI | AGGCCT | 1 cut(s) | 2049 |
| StyI | CCWWGG | 3 cut(s) | 1096, 1302, 2156 |
| TaiI | ACGT | 2 cut(s) | 1114, 2346 |
| TauI | GCSGC | 1 cut(s) | 1420 |
| TscAI | CASTG | 1 cut(s) | 1429 |
| TseFI | GTSAC | 4 cut(s) | 740, 806, 1483, 2248 |
| TseI | GCWGC | 7 cut(s) | 257, 589, 592, 1438, 2570, 2685, 2750 |
| Tsp45I | GTSAC | 4 cut(s) | 740, 806, 1483, 2248 |
| TspDTI | ATGAA | 8 cut(s) | 111, 518, 652, 1063, 1200, 1506, 1575, 1897 |
| TspGWI | ACGGA | 3 cut(s) | 150, 573, 1446 |
| TspRI | CASTG | 1 cut(s) | 1429 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2317 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 85 |
| VpaK11BI | GGWCC | 3 cut(s) | 76, 137, 2458 |
| VspI | ATTAAT | 3 cut(s) | 60, 792, 1554 |
| XapI | RAATTY | 6 cut(s) | 339, 949, 1615, 1736, 2139, 2151 |
| XceI | RCATGY | 7 cut(s) | 360, 611, 646, 1728, 2003, 2021, 2358 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2222 |
| XhoI | CTCGAG | 1 cut(s) | 104 |
| XmaJI | CCTAGG | 1 cut(s) | 2156 |
| XmiI | GTMKAC | 3 cut(s) | 1116, 2340, 2616 |
| XmnI | GAANNNNTTC | 2 cut(s) | 342, 1533 |
| XspI | CTAG | 8 cut(s) | 401, 474, 503, 1020, 1025, 1457, 2157, 2375 |
| Zsp2I | ATGCAT | 2 cut(s) | 495, 1730 |