TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 27 - 187 | 6.3e-57 | TIR domain |
| TIR_2 | PF13676 | 29 - 124 | 9.1e-16 | TIR domain |
| NB-ARC | PF00931 | 215 - 378 | 4.5e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 448 - 516 | 6.2e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 706 - 911 | 1.7e-23 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 717 - 788 | 5.2e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1320, 1724, 1844, 2046 |
| AciI | CCGC | 2 cut(s) | 2511, 3316 |
| AclWI | GGATC | 8 cut(s) | 304, 362, 375, 916, 929, 1164, 2018, 3255 |
| AcoI | YGGCCR | 4 cut(s) | 347, 1790, 1953, 3233 |
| AcuI | CTGAAG | 1 cut(s) | 2376 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 803, 1436, 2033 |
| AflIII | ACRYGT | 2 cut(s) | 1869, 3000 |
| AjnI | CCWGG | 3 cut(s) | 1287, 1558, 3216 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2880, 2912 |
| Alw21I | GWGCWC | 2 cut(s) | 645, 3474 |
| Alw26I | GTCTC | 5 cut(s) | 624, 653, 2347, 2501, 2835 |
| Alw44I | GTGCAC | 1 cut(s) | 3470 |
| AlwI | GGATC | 8 cut(s) | 304, 362, 375, 916, 929, 1164, 2018, 3255 |
| Ama87I | CYCGRG | 1 cut(s) | 997 |
| AoxI | GGCC | 6 cut(s) | 347, 805, 1461, 1790, 1953, 3233 |
| ApaLI | GTGCAC | 1 cut(s) | 3470 |
| ApeKI | GCWGC | 7 cut(s) | 485, 1256, 1932, 2310, 2326, 3263, 3407 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1121, 2418 |
| AspA2I | CCTAGG | 1 cut(s) | 2096 |
| AspLEI | GCGC | 3 cut(s) | 217, 912, 3268 |
| AspS9I | GGNCC | 3 cut(s) | 504, 1462, 3334 |
| AsuHPI | GGTGA | 6 cut(s) | 116, 416, 877, 1117, 1351, 1539 |
| AvaI | CYCGRG | 1 cut(s) | 997 |
| AvaII | GGWCC | 2 cut(s) | 504, 3334 |
| AvrII | CCTAGG | 1 cut(s) | 2096 |
| BaeGI | GKGCMC | 1 cut(s) | 3474 |
| BalI | TGGCCA | 4 cut(s) | 349, 1792, 1955, 3235 |
| BamHI | GGATCC | 2 cut(s) | 367, 921 |
| BanII | GRGCYC | 1 cut(s) | 645 |
| BbsI | GAAGAC | 7 cut(s) | 79, 821, 1184, 2546, 3366, 3462, 3542 |
| Bbv12I | GWGCWC | 2 cut(s) | 645, 3474 |
| BbvI | GCAGC | 7 cut(s) | 497, 1268, 1919, 2322, 2338, 3250, 3419 |
| BccI | CCATC | 7 cut(s) | 74, 379, 456, 1825, 2176, 2242, 2641 |
| BciT130I | CCWGG | 3 cut(s) | 1289, 1560, 3218 |
| BciVI | GTATCC | 1 cut(s) | 3224 |
| BcoDI | GTCTC | 5 cut(s) | 624, 653, 2347, 2501, 2835 |
| BfaI | CTAG | 8 cut(s) | 809, 1160, 1328, 1355, 2097, 2664, 2681, 3341 |
| BfmI | CTRYAG | 3 cut(s) | 1170, 2914, 3405 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BfuI | GTATCC | 1 cut(s) | 3224 |
| BglII | AGATCT | 1 cut(s) | 2266 |
| BisI | GCNGC | 7 cut(s) | 486, 1257, 1933, 2311, 2327, 3264, 3408 |
| BlnI | CCTAGG | 1 cut(s) | 2096 |
| BlsI | GCNGC | 7 cut(s) | 487, 1258, 1934, 2312, 2328, 3265, 3409 |
| BmcAI | AGTACT | 2 cut(s) | 1168, 1449 |
| Bme1390I | CCNGG | 3 cut(s) | 1289, 1560, 3218 |
| Bme18I | GGWCC | 2 cut(s) | 504, 3334 |
| BmeT110I | CYCGRG | 1 cut(s) | 997 |
| BmgT120I | GGNCC | 3 cut(s) | 504, 1462, 3334 |
| BmiI | GGNNCC | 6 cut(s) | 369, 923, 1781, 2909, 3335, 3510 |
| BmrFI | CCNGG | 3 cut(s) | 1289, 1560, 3218 |
| BmrI | ACTGGG | 2 cut(s) | 599, 1755 |
| BmsI | GCATC | 6 cut(s) | 1488, 1745, 2063, 2338, 2453, 3145 |
| BmuI | ACTGGG | 2 cut(s) | 599, 1755 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2061 |
| BpiI | GAAGAC | 7 cut(s) | 79, 821, 1184, 2546, 3366, 3462, 3542 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2327, 2359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 508 |
| BpuEI | CTTGAG | 3 cut(s) | 21, 2080, 2354 |
| BsaBI | GATNNNNATC | 2 cut(s) | 945, 1596 |
| BsaI | GGTCTC | 1 cut(s) | 2347 |
| BsaJI | CCNNGG | 4 cut(s) | 1832, 2096, 3217, 3328 |
| BsaWI | WCCGGW | 1 cut(s) | 2425 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 440, 470, 795, 825 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 803, 1436, 2033 |
| Bse118I | RCCGGY | 1 cut(s) | 1138 |
| Bse1I | ACTGG | 7 cut(s) | 397, 605, 697, 958, 1413, 1750, 2493 |
| Bse3DI | GCAATG | 4 cut(s) | 1359, 1738, 1802, 2094 |
| Bse8I | GATNNNNATC | 2 cut(s) | 945, 1596 |
| BseBI | CCWGG | 3 cut(s) | 1289, 1560, 3218 |
| BseDI | CCNNGG | 4 cut(s) | 1832, 2096, 3217, 3328 |
| BseGI | GGATG | 9 cut(s) | 371, 1503, 1597, 2078, 2288, 2468, 3000, 3178, 3192 |
| BseJI | GATNNNNATC | 2 cut(s) | 945, 1596 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 803, 1436, 2033 |
| BseMI | GCAATG | 4 cut(s) | 1359, 1738, 1802, 2094 |
| BseMII | CTCAG | 3 cut(s) | 83, 1710, 3150 |
| BseNI | ACTGG | 7 cut(s) | 397, 605, 697, 958, 1413, 1750, 2493 |
| BseRI | GAGGAG | 3 cut(s) | 210, 256, 3469 |
| BseSI | GKGCMC | 1 cut(s) | 3474 |
| BseXI | GCAGC | 7 cut(s) | 497, 1268, 1919, 2322, 2338, 3250, 3419 |
| BsgI | GTGCAG | 1 cut(s) | 2430 |
| Bsh1285I | CGRYCG | 1 cut(s) | 30 |
| BshFI | GGCC | 6 cut(s) | 349, 807, 1463, 1792, 1955, 3235 |
| BsiEI | CGRYCG | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 2 cut(s) | 645, 3474 |
| BsiHKCI | CYCGRG | 1 cut(s) | 997 |
| BsiSI | CCGG | 3 cut(s) | 1139, 2211, 2426 |
| BslFI | GGGAC | 2 cut(s) | 1980, 2681 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 803, 1436, 2033 |
| BsmAI | GTCTC | 5 cut(s) | 624, 653, 2347, 2501, 2835 |
| BsmFI | GGGAC | 2 cut(s) | 1980, 2681 |
| BsmI | GAATGC | 4 cut(s) | 431, 1123, 1687, 2360 |
| BsnI | GGCC | 6 cut(s) | 349, 807, 1463, 1792, 1955, 3235 |
| Bso31I | GGTCTC | 1 cut(s) | 2347 |
| BsoBI | CYCGRG | 1 cut(s) | 997 |
| Bsp1286I | GDGCHC | 2 cut(s) | 645, 3474 |
| Bsp1407I | TGTACA | 6 cut(s) | 138, 578, 729, 2003, 2997, 3373 |
| BspACI | CCGC | 2 cut(s) | 2511, 3316 |
| BspANI | GGCC | 6 cut(s) | 349, 807, 1463, 1792, 1955, 3235 |
| BspCNI | CTCAG | 3 cut(s) | 84, 1709, 3151 |
| BspHI | TCATGA | 4 cut(s) | 538, 1090, 2199, 2785 |
| BspLI | GGNNCC | 6 cut(s) | 369, 923, 1781, 2909, 3335, 3510 |
| BspMAI | CTGCAG | 1 cut(s) | 3409 |
| BspPI | GGATC | 8 cut(s) | 304, 362, 375, 916, 929, 1164, 2018, 3255 |
| BspTNI | GGTCTC | 1 cut(s) | 2347 |
| BsrDI | GCAATG | 4 cut(s) | 1359, 1738, 1802, 2094 |
| BsrFI | RCCGGY | 1 cut(s) | 1138 |
| BsrGI | TGTACA | 6 cut(s) | 138, 578, 729, 2003, 2997, 3373 |
| BsrI | ACTGG | 7 cut(s) | 397, 605, 697, 958, 1413, 1750, 2493 |
| BssAI | RCCGGY | 1 cut(s) | 1138 |
| BssECI | CCNNGG | 4 cut(s) | 1832, 2096, 3217, 3328 |
| BssT1I | CCWWGG | 3 cut(s) | 1832, 2096, 3328 |
| Bst2UI | CCWGG | 3 cut(s) | 1289, 1560, 3218 |
| Bst4CI | ACNGT | 9 cut(s) | 618, 1171, 2003, 2672, 2759, 2769, 2915, 3278, 3296 |
| Bst6I | CTCTTC | 4 cut(s) | 58, 187, 228, 1581 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 907, 1507, 1813 |
| BstAUI | TGTACA | 6 cut(s) | 138, 578, 729, 2003, 2997, 3373 |
| BstC8I | GCNNGC | 4 cut(s) | 1140, 1254, 1565, 2107 |
| BstDEI | CTNAG | 8 cut(s) | 92, 188, 476, 508, 1696, 1978, 3159, 3460 |
| BstEII | GGTNACC | 1 cut(s) | 865 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 801 |
| BstF5I | GGATG | 9 cut(s) | 371, 1503, 1597, 2078, 2288, 2468, 3000, 3178, 3192 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 3 cut(s) | 217, 912, 3268 |
| BstMAI | GTCTC | 5 cut(s) | 624, 653, 2347, 2501, 2835 |
| BstMCI | CGRYCG | 1 cut(s) | 30 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 907, 1507, 1564, 1569, 1813, 2437, 2599 |
| BstNI | CCWGG | 3 cut(s) | 1289, 1560, 3218 |
| BstNSI | RCATGY | 3 cut(s) | 1368, 1858, 1873 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2061 |
| BstPI | GGTNACC | 1 cut(s) | 865 |
| BstSCI | CCNGG | 3 cut(s) | 1287, 1558, 3216 |
| BstSFI | CTRYAG | 3 cut(s) | 1170, 2914, 3405 |
| BstSLI | GKGCMC | 1 cut(s) | 3474 |
| BstV1I | GCAGC | 7 cut(s) | 497, 1268, 1919, 2322, 2338, 3250, 3419 |
| BstV2I | GAAGAC | 7 cut(s) | 79, 821, 1184, 2546, 3366, 3462, 3542 |
| BstX2I | RGATCY | 5 cut(s) | 309, 367, 921, 1156, 2266 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3243 |
| BstYI | RGATCY | 5 cut(s) | 309, 367, 921, 1156, 2266 |
| BsuI | GTATCC | 1 cut(s) | 3224 |
| BsuRI | GGCC | 6 cut(s) | 349, 807, 1463, 1792, 1955, 3235 |
| BtsCI | GGATG | 9 cut(s) | 371, 1503, 1597, 2078, 2288, 2468, 3000, 3178, 3192 |
| BtsIMutI | CAGTG | 2 cut(s) | 1999, 2911 |
| Cac8I | GCNNGC | 4 cut(s) | 1140, 1254, 1565, 2107 |
| CciI | TCATGA | 4 cut(s) | 538, 1090, 2199, 2785 |
| CfoI | GCGC | 3 cut(s) | 217, 912, 3268 |
| Cfr10I | RCCGGY | 1 cut(s) | 1138 |
| Cfr13I | GGNCC | 3 cut(s) | 504, 1462, 3334 |
| CseI | GACGC | 1 cut(s) | 264 |
| DdeI | CTNAG | 8 cut(s) | 92, 188, 476, 508, 1696, 1978, 3159, 3460 |
| DraI | TTTAAA | 1 cut(s) | 1375 |
| EaeI | YGGCCR | 4 cut(s) | 347, 1790, 1953, 3233 |
| Eam1104I | CTCTTC | 4 cut(s) | 58, 187, 228, 1581 |
| EarI | CTCTTC | 4 cut(s) | 58, 187, 228, 1581 |
| Ecl136II | GAGCTC | 1 cut(s) | 643 |
| Eco130I | CCWWGG | 3 cut(s) | 1832, 2096, 3328 |
| Eco147I | AGGCCT | 1 cut(s) | 807 |
| Eco24I | GRGCYC | 1 cut(s) | 645 |
| Eco31I | GGTCTC | 1 cut(s) | 2347 |
| Eco32I | GATATC | 1 cut(s) | 544 |
| Eco47I | GGWCC | 2 cut(s) | 504, 3334 |
| Eco53kI | GAGCTC | 1 cut(s) | 643 |
| Eco57I | CTGAAG | 1 cut(s) | 2376 |
| Eco88I | CYCGRG | 1 cut(s) | 997 |
| Eco91I | GGTNACC | 1 cut(s) | 865 |
| EcoICRI | GAGCTC | 1 cut(s) | 643 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 801 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1462 |
| EcoO65I | GGTNACC | 1 cut(s) | 865 |
| EcoRI | GAATTC | 2 cut(s) | 2186, 2483 |
| EcoRII | CCWGG | 3 cut(s) | 1287, 1558, 3216 |
| EcoRV | GATATC | 1 cut(s) | 544 |
| EcoT14I | CCWWGG | 3 cut(s) | 1832, 2096, 3328 |
| EcoT22I | ATGCAT | 2 cut(s) | 1503, 1738 |
| EcoT38I | GRGCYC | 1 cut(s) | 645 |
| ErhI | CCWWGG | 3 cut(s) | 1832, 2096, 3328 |
| FaqI | GGGAC | 2 cut(s) | 1980, 2681 |
| FauNDI | CATATG | 1 cut(s) | 1666 |
| Fnu4HI | GCNGC | 7 cut(s) | 486, 1257, 1933, 2311, 2327, 3264, 3408 |
| FokI | GGATG | 9 cut(s) | 358, 1510, 1604, 2085, 2295, 2475, 3007, 3179, 3185 |
| FriOI | GRGCYC | 1 cut(s) | 645 |
| Fsp4HI | GCNGC | 7 cut(s) | 486, 1257, 1933, 2311, 2327, 3264, 3408 |
| FspBI | CTAG | 8 cut(s) | 809, 1160, 1328, 1355, 2097, 2664, 2681, 3341 |
| GlaI | GCGC | 3 cut(s) | 216, 911, 3267 |
| GluI | GCNGC | 7 cut(s) | 486, 1257, 1933, 2311, 2327, 3264, 3408 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 6 cut(s) | 349, 807, 1463, 1792, 1955, 3235 |
| HapII | CCGG | 3 cut(s) | 1139, 2211, 2426 |
| HgaI | GACGC | 1 cut(s) | 264 |
| HhaI | GCGC | 3 cut(s) | 217, 912, 3268 |
| Hin6I | GCGC | 3 cut(s) | 215, 910, 3266 |
| HinP1I | GCGC | 3 cut(s) | 215, 910, 3266 |
| HincII | GTYRAC | 3 cut(s) | 2056, 2371, 2581 |
| HindII | GTYRAC | 3 cut(s) | 2056, 2371, 2581 |
| HindIII | AAGCTT | 4 cut(s) | 1095, 1690, 2048, 2149 |
| HpaI | GTTAAC | 1 cut(s) | 2371 |
| HpaII | CCGG | 3 cut(s) | 1139, 2211, 2426 |
| HphI | GGTGA | 6 cut(s) | 116, 416, 877, 1117, 1351, 1539 |
| HpyCH4III | ACNGT | 9 cut(s) | 618, 1171, 2003, 2672, 2759, 2769, 2915, 3278, 3296 |
| HpyCH4IV | ACGT | 1 cut(s) | 3002 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 907, 1507, 1564, 1569, 1813, 2437, 2599 |
| HpyF3I | CTNAG | 8 cut(s) | 92, 188, 476, 508, 1696, 1978, 3159, 3460 |
| HpySE526I | ACGT | 1 cut(s) | 3002 |
| HspAI | GCGC | 3 cut(s) | 215, 910, 3266 |
| KroI | GCCGGC | 1 cut(s) | 1138 |
| KroNI | GCCGGC | 1 cut(s) | 1140 |
| KspAI | GTTAAC | 1 cut(s) | 2371 |
| LmnI | GCTCC | 3 cut(s) | 41, 1102, 2155 |
| Lsp1109I | GCAGC | 7 cut(s) | 497, 1268, 1919, 2322, 2338, 3250, 3419 |
| LweI | GCATC | 6 cut(s) | 1488, 1745, 2063, 2338, 2453, 3145 |
| MaeI | CTAG | 8 cut(s) | 809, 1160, 1328, 1355, 2097, 2664, 2681, 3341 |
| MaeII | ACGT | 1 cut(s) | 3002 |
| MaeIII | GTNAC | 8 cut(s) | 865, 1268, 1418, 1872, 2386, 2609, 2724, 3343 |
| MfeI | CAATTG | 1 cut(s) | 714 |
| MflI | RGATCY | 5 cut(s) | 309, 367, 921, 1156, 2266 |
| MhlI | GDGCHC | 2 cut(s) | 645, 3474 |
| MlsI | TGGCCA | 4 cut(s) | 349, 1792, 1955, 3235 |
| MluNI | TGGCCA | 4 cut(s) | 349, 1792, 1955, 3235 |
| MlyI | GAGTC | 5 cut(s) | 245, 2071, 2732, 2837, 3176 |
| MmeI | TCCRAC | 7 cut(s) | 589, 955, 1094, 2014, 2778, 2999, 3150 |
| Mox20I | TGGCCA | 4 cut(s) | 349, 1792, 1955, 3235 |
| Mph1103I | ATGCAT | 2 cut(s) | 1503, 1738 |
| MroNI | GCCGGC | 1 cut(s) | 1138 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1121, 2418 |
| MscI | TGGCCA | 4 cut(s) | 349, 1792, 1955, 3235 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1225, 1227, 1680, 2607, 3241, 3429 |
| Msp20I | TGGCCA | 4 cut(s) | 349, 1792, 1955, 3235 |
| MspA1I | CMGCKG | 1 cut(s) | 2109 |
| MspI | CCGG | 3 cut(s) | 1139, 2211, 2426 |
| MspR9I | CCNGG | 3 cut(s) | 1289, 1560, 3218 |
| MunI | CAATTG | 1 cut(s) | 714 |
| Mva1269I | GAATGC | 4 cut(s) | 431, 1123, 1687, 2360 |
| MvaI | CCWGG | 3 cut(s) | 1289, 1560, 3218 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 907, 1507, 1564, 1569, 1813, 2437, 2599 |
| NaeI | GCCGGC | 1 cut(s) | 1140 |
| NdeI | CATATG | 1 cut(s) | 1666 |
| NgoMIV | GCCGGC | 1 cut(s) | 1138 |
| NlaIV | GGNNCC | 6 cut(s) | 369, 923, 1781, 2909, 3335, 3510 |
| NmuCI | GTSAC | 6 cut(s) | 865, 1418, 1872, 2386, 2609, 2724 |
| NsiI | ATGCAT | 2 cut(s) | 1503, 1738 |
| NspI | RCATGY | 3 cut(s) | 1368, 1858, 1873 |
| PagI | TCATGA | 4 cut(s) | 538, 1090, 2199, 2785 |
| PceI | AGGCCT | 1 cut(s) | 807 |
| PciI | ACATGT | 1 cut(s) | 1869 |
| PctI | GAATGC | 4 cut(s) | 431, 1123, 1687, 2360 |
| PdiI | GCCGGC | 1 cut(s) | 1140 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1121, 2418 |
| PkrI | GCNGC | 7 cut(s) | 487, 1258, 1934, 2312, 2328, 3265, 3409 |
| Ple19I | CGATCG | 1 cut(s) | 30 |
| PleI | GAGTC | 5 cut(s) | 244, 2070, 2731, 2836, 3175 |
| PpsI | GAGTC | 5 cut(s) | 244, 2070, 2731, 2836, 3175 |
| PscI | ACATGT | 1 cut(s) | 1869 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2061 |
| PsiI | TTATAA | 4 cut(s) | 1320, 1724, 1844, 2046 |
| Psp124BI | GAGCTC | 1 cut(s) | 645 |
| Psp6I | CCWGG | 3 cut(s) | 1287, 1558, 3216 |
| PspEI | GGTNACC | 1 cut(s) | 865 |
| PspGI | CCWGG | 3 cut(s) | 1287, 1558, 3216 |
| PspN4I | GGNNCC | 6 cut(s) | 369, 923, 1781, 2909, 3335, 3510 |
| PspPI | GGNCC | 3 cut(s) | 504, 1462, 3334 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1587, 1619, 3292, 3324 |
| PstI | CTGCAG | 1 cut(s) | 3409 |
| PsuI | RGATCY | 5 cut(s) | 309, 367, 921, 1156, 2266 |
| PvuI | CGATCG | 1 cut(s) | 30 |
| PvuII | CAGCTG | 1 cut(s) | 2109 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1225, 1227, 1680, 2607, 3241, 3429 |
| SacI | GAGCTC | 1 cut(s) | 645 |
| SatI | GCNGC | 7 cut(s) | 486, 1257, 1933, 2311, 2327, 3264, 3408 |
| Sau96I | GGNCC | 3 cut(s) | 504, 1462, 3334 |
| ScaI | AGTACT | 2 cut(s) | 1168, 1449 |
| SchI | GAGTC | 5 cut(s) | 245, 2071, 2732, 2837, 3176 |
| ScrFI | CCNGG | 3 cut(s) | 1289, 1560, 3218 |
| SduI | GDGCHC | 2 cut(s) | 645, 3474 |
| SfaNI | GCATC | 6 cut(s) | 1488, 1745, 2063, 2338, 2453, 3145 |
| SfcI | CTRYAG | 3 cut(s) | 1170, 2914, 3405 |
| SinI | GGWCC | 2 cut(s) | 504, 3334 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1225, 1227, 1680, 2607, 3241, 3429 |
| SmlI | CTYRAG | 3 cut(s) | 36, 2059, 2333 |
| SmoI | CTYRAG | 3 cut(s) | 36, 2059, 2333 |
| SseBI | AGGCCT | 1 cut(s) | 807 |
| SsiI | CCGC | 2 cut(s) | 2511, 3316 |
| SspI | AATATT | 3 cut(s) | 1474, 2954, 3451 |
| SspMI | CTAG | 8 cut(s) | 809, 1160, 1328, 1355, 2097, 2664, 2681, 3341 |
| SstI | GAGCTC | 1 cut(s) | 645 |
| StuI | AGGCCT | 1 cut(s) | 807 |
| StyD4I | CCNGG | 3 cut(s) | 1287, 1558, 3216 |
| StyI | CCWWGG | 3 cut(s) | 1832, 2096, 3328 |
| TaaI | ACNGT | 9 cut(s) | 618, 1171, 2003, 2672, 2759, 2769, 2915, 3278, 3296 |
| TaiI | ACGT | 1 cut(s) | 3005 |
| TscAI | CASTG | 2 cut(s) | 2006, 2918 |
| TseFI | GTSAC | 6 cut(s) | 865, 1418, 1872, 2386, 2609, 2724 |
| TseI | GCWGC | 7 cut(s) | 485, 1256, 1932, 2310, 2326, 3263, 3407 |
| Tsp45I | GTSAC | 6 cut(s) | 865, 1418, 1872, 2386, 2609, 2724 |
| TspRI | CASTG | 2 cut(s) | 2006, 2918 |
| VneI | GTGCAC | 1 cut(s) | 3470 |
| VpaK11BI | GGWCC | 2 cut(s) | 504, 3334 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 801 |
| XceI | RCATGY | 3 cut(s) | 1368, 1858, 1873 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3392 |
| XmaJI | CCTAGG | 1 cut(s) | 2096 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1121, 2418 |
| XspI | CTAG | 8 cut(s) | 809, 1160, 1328, 1355, 2097, 2664, 2681, 3341 |
| ZrmI | AGTACT | 2 cut(s) | 1168, 1449 |
| Zsp2I | ATGCAT | 2 cut(s) | 1503, 1738 |