Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 565 |
| Acc36I | ACCTGC | 1 cut(s) | 565 |
| AclWI | GGATC | 2 cut(s) | 336, 432 |
| AcoI | YGGCCR | 1 cut(s) | 370 |
| AflIII | ACRYGT | 1 cut(s) | 194 |
| AgsI | TTSAA | 4 cut(s) | 212, 229, 461, 531 |
| AjnI | CCWGG | 2 cut(s) | 121, 183 |
| AluBI | AGCT | 4 cut(s) | 46, 305, 489, 551 |
| AluI | AGCT | 4 cut(s) | 46, 305, 489, 551 |
| AlwI | GGATC | 2 cut(s) | 336, 432 |
| AoxI | GGCC | 3 cut(s) | 181, 370, 646 |
| ApeKI | GCWGC | 2 cut(s) | 167, 548 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 237, 269 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 143 |
| AsuHPI | GGTGA | 1 cut(s) | 491 |
| AsuII | TTCGAA | 1 cut(s) | 155 |
| BalI | TGGCCA | 1 cut(s) | 372 |
| BbvI | GCAGC | 2 cut(s) | 154, 560 |
| BccI | CCATC | 2 cut(s) | 61, 323 |
| BceAI | ACGGC | 1 cut(s) | 589 |
| BciT130I | CCWGG | 2 cut(s) | 123, 185 |
| BclI | TGATCA | 1 cut(s) | 475 |
| BfaI | CTAG | 2 cut(s) | 578, 650 |
| BfuAI | ACCTGC | 1 cut(s) | 565 |
| BisI | GCNGC | 2 cut(s) | 168, 549 |
| BlsI | GCNGC | 2 cut(s) | 169, 550 |
| Bme1390I | CCNGG | 2 cut(s) | 123, 185 |
| BmiI | GGNNCC | 2 cut(s) | 135, 146 |
| BmrFI | CCNGG | 2 cut(s) | 123, 185 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 486, 518 |
| Bpu14I | TTCGAA | 1 cut(s) | 155 |
| Bse1I | ACTGG | 2 cut(s) | 252, 636 |
| BseBI | CCWGG | 2 cut(s) | 123, 185 |
| BseNI | ACTGG | 2 cut(s) | 252, 636 |
| BseXI | GCAGC | 2 cut(s) | 154, 560 |
| BseYI | CCCAGC | 1 cut(s) | 46 |
| BsgI | GTGCAG | 1 cut(s) | 219 |
| Bsh1285I | CGRYCG | 1 cut(s) | 301 |
| BshFI | GGCC | 3 cut(s) | 183, 372, 648 |
| BsiEI | CGRYCG | 1 cut(s) | 301 |
| BsnI | GGCC | 3 cut(s) | 183, 372, 648 |
| Bsp119I | TTCGAA | 1 cut(s) | 155 |
| Bsp143I | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| BspANI | GGCC | 3 cut(s) | 183, 372, 648 |
| BspLI | GGNNCC | 2 cut(s) | 135, 146 |
| BspMI | ACCTGC | 1 cut(s) | 565 |
| BspPI | GGATC | 2 cut(s) | 336, 432 |
| BspT104I | TTCGAA | 1 cut(s) | 155 |
| BsrI | ACTGG | 2 cut(s) | 252, 636 |
| BssMI | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| Bst2UI | CCWGG | 2 cut(s) | 123, 185 |
| Bst4CI | ACNGT | 3 cut(s) | 356, 434, 452 |
| BstBI | TTCGAA | 1 cut(s) | 155 |
| BstKTI | GATC | 5 cut(s) | 301, 337, 344, 427, 478 |
| BstMBI | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| BstMCI | CGRYCG | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 557, 601 |
| BstNI | CCWGG | 2 cut(s) | 123, 185 |
| BstNSI | RCATGY | 1 cut(s) | 198 |
| BstSCI | CCNGG | 2 cut(s) | 121, 183 |
| BstV1I | GCAGC | 2 cut(s) | 154, 560 |
| BstX2I | RGATCY | 1 cut(s) | 341 |
| BstYI | RGATCY | 1 cut(s) | 341 |
| BsuRI | GGCC | 3 cut(s) | 183, 372, 648 |
| BtgZI | GCGATG | 1 cut(s) | 585 |
| BtsIMutI | CAGTG | 2 cut(s) | 448, 629 |
| BveI | ACCTGC | 1 cut(s) | 565 |
| CseI | GACGC | 1 cut(s) | 368 |
| CsiI | ACCWGGT | 1 cut(s) | 121 |
| CviAII | CATG | 2 cut(s) | 58, 195 |
| DpnI | GATC | 5 cut(s) | 300, 336, 343, 426, 477 |
| DpnII | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| EaeI | YGGCCR | 1 cut(s) | 370 |
| Eco147I | AGGCCT | 1 cut(s) | 183 |
| EcoRII | CCWGG | 2 cut(s) | 121, 183 |
| FaeI | CATG | 2 cut(s) | 61, 198 |
| FatI | CATG | 2 cut(s) | 57, 194 |
| FauNDI | CATATG | 1 cut(s) | 375 |
| FbaI | TGATCA | 1 cut(s) | 475 |
| Fnu4HI | GCNGC | 2 cut(s) | 168, 549 |
| Fsp4HI | GCNGC | 2 cut(s) | 168, 549 |
| FspBI | CTAG | 2 cut(s) | 578, 650 |
| GluI | GCNGC | 2 cut(s) | 168, 549 |
| GsaI | CCCAGC | 1 cut(s) | 50 |
| HaeIII | GGCC | 3 cut(s) | 183, 372, 648 |
| HgaI | GACGC | 1 cut(s) | 368 |
| Hin1II | CATG | 2 cut(s) | 61, 198 |
| HinfI | GANTC | 1 cut(s) | 626 |
| HphI | GGTGA | 1 cut(s) | 491 |
| Hpy166II | GTNNAC | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 5 cut(s) | 93, 138, 339, 384, 403 |
| Hpy188III | TCNNGA | 1 cut(s) | 672 |
| Hpy8I | GTNNAC | 1 cut(s) | 499 |
| HpyAV | CCTTC | 1 cut(s) | 151 |
| HpyCH4III | ACNGT | 3 cut(s) | 356, 434, 452 |
| HpyCH4IV | ACGT | 1 cut(s) | 642 |
| HpyCH4V | TGCA | 1 cut(s) | 200 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 557, 601 |
| HpySE526I | ACGT | 1 cut(s) | 642 |
| Hsp92II | CATG | 2 cut(s) | 61, 198 |
| Ksp22I | TGATCA | 1 cut(s) | 475 |
| Kzo9I | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| LmnI | GCTCC | 1 cut(s) | 556 |
| LpnPI | CCDG | 9 cut(s) | 32, 108, 135, 170, 197, 233, 483, 570, 617 |
| Lsp1109I | GCAGC | 2 cut(s) | 154, 560 |
| MabI | ACCWGGT | 1 cut(s) | 121 |
| MaeI | CTAG | 2 cut(s) | 578, 650 |
| MaeII | ACGT | 1 cut(s) | 642 |
| MaeIII | GTNAC | 1 cut(s) | 38 |
| MalI | GATC | 5 cut(s) | 300, 336, 343, 426, 477 |
| MboI | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| MboII | GAAGA | 2 cut(s) | 76, 626 |
| MfeI | CAATTG | 1 cut(s) | 366 |
| MflI | RGATCY | 1 cut(s) | 341 |
| MlsI | TGGCCA | 1 cut(s) | 372 |
| MluCI | AATT | 7 cut(s) | 22, 224, 229, 291, 366, 385, 461 |
| MluNI | TGGCCA | 1 cut(s) | 372 |
| MmeI | TCCRAC | 1 cut(s) | 383 |
| MnlI | CCTC | 5 cut(s) | 124, 154, 265, 316, 512 |
| Mox20I | TGGCCA | 1 cut(s) | 372 |
| MroXI | GAANNNNTTC | 1 cut(s) | 143 |
| MscI | TGGCCA | 1 cut(s) | 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 193 |
| Msp20I | TGGCCA | 1 cut(s) | 372 |
| MspR9I | CCNGG | 2 cut(s) | 123, 185 |
| MunI | CAATTG | 1 cut(s) | 366 |
| MvaI | CCWGG | 2 cut(s) | 123, 185 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 557, 601 |
| NdeI | CATATG | 1 cut(s) | 375 |
| NdeII | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| NlaIII | CATG | 2 cut(s) | 61, 198 |
| NlaIV | GGNNCC | 2 cut(s) | 135, 146 |
| NspI | RCATGY | 1 cut(s) | 198 |
| NspV | TTCGAA | 1 cut(s) | 155 |
| PaqCI | CACCTGC | 1 cut(s) | 565 |
| PceI | AGGCCT | 1 cut(s) | 183 |
| PciI | ACATGT | 1 cut(s) | 194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 143 |
| PfeI | GAWTC | 1 cut(s) | 626 |
| PkrI | GCNGC | 2 cut(s) | 169, 550 |
| Ple19I | CGATCG | 1 cut(s) | 301 |
| PscI | ACATGT | 1 cut(s) | 194 |
| Psp6I | CCWGG | 2 cut(s) | 121, 183 |
| PspFI | CCCAGC | 1 cut(s) | 46 |
| PspGI | CCWGG | 2 cut(s) | 121, 183 |
| PspN4I | GGNNCC | 2 cut(s) | 135, 146 |
| PsuI | RGATCY | 1 cut(s) | 341 |
| PvuI | CGATCG | 1 cut(s) | 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 193 |
| SatI | GCNGC | 2 cut(s) | 168, 549 |
| Sau3AI | GATC | 5 cut(s) | 298, 334, 341, 424, 475 |
| ScrFI | CCNGG | 2 cut(s) | 123, 185 |
| SexAI | ACCWGGT | 1 cut(s) | 121 |
| SfuI | TTCGAA | 1 cut(s) | 155 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 193 |
| Sse9I | AATT | 7 cut(s) | 22, 224, 229, 291, 366, 385, 461 |
| SseBI | AGGCCT | 1 cut(s) | 183 |
| SspI | AATATT | 2 cut(s) | 76, 527 |
| SspMI | CTAG | 2 cut(s) | 578, 650 |
| StuI | AGGCCT | 1 cut(s) | 183 |
| StyD4I | CCNGG | 2 cut(s) | 121, 183 |
| TaaI | ACNGT | 3 cut(s) | 356, 434, 452 |
| TaiI | ACGT | 1 cut(s) | 645 |
| TaqI | TCGA | 3 cut(s) | 155, 301, 454 |
| TasI | AATT | 7 cut(s) | 22, 224, 229, 291, 366, 385, 461 |
| TfiI | GAWTC | 1 cut(s) | 626 |
| TscAI | CASTG | 2 cut(s) | 455, 636 |
| TseI | GCWGC | 2 cut(s) | 167, 548 |
| TspDTI | ATGAA | 5 cut(s) | 189, 420, 497, 537, 588 |
| TspRI | CASTG | 2 cut(s) | 455, 636 |
| XceI | RCATGY | 1 cut(s) | 198 |
| XmnI | GAANNNNTTC | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 578, 650 |