TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 184 | 7.9e-57 | TIR domain |
| TIR_2 | PF13676 | 22 - 116 | 3.3e-16 | TIR domain |
| NB-ARC | PF00931 | 207 - 371 | 4e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 505 | 6.3e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 691 - 802 | 1.2e-13 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 872 - 963 | 3.2e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 554, 1572, 1986 |
| AarI | CACCTGC | 1 cut(s) | 1755 |
| Acc36I | ACCTGC | 2 cut(s) | 1536, 1755 |
| AccB1I | GGYRCC | 1 cut(s) | 1519 |
| AccI | GTMKAC | 1 cut(s) | 3231 |
| AccII | CGCG | 2 cut(s) | 125, 254 |
| AccIII | TCCGGA | 1 cut(s) | 2681 |
| AciI | CCGC | 6 cut(s) | 464, 2814, 3375, 3399, 3498, 3576 |
| AclWI | GGATC | 1 cut(s) | 1523 |
| AcuI | CTGAAG | 2 cut(s) | 1075, 3376 |
| AcyI | GRCGYC | 1 cut(s) | 1520 |
| AfaI | GTAC | 8 cut(s) | 584, 1049, 1833, 2007, 2131, 2335, 2358, 3622 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 264, 2018 |
| AflII | CTTAAG | 1 cut(s) | 1835 |
| AflIII | ACRYGT | 3 cut(s) | 252, 2259, 2336 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2944 |
| AjnI | CCWGG | 4 cut(s) | 1531, 3013, 3411, 3661 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1810, 1842 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3009, 3041 |
| Alw21I | GWGCWC | 3 cut(s) | 168, 1089, 1425 |
| Alw26I | GTCTC | 5 cut(s) | 1469, 1942, 2405, 2662, 3212 |
| AlwI | GGATC | 1 cut(s) | 1523 |
| Ama87I | CYCGRG | 2 cut(s) | 293, 2478 |
| Aor13HI | TCCGGA | 1 cut(s) | 2681 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| AoxI | GGCC | 6 cut(s) | 109, 482, 1171, 1393, 1434, 1775 |
| ApeKI | GCWGC | 6 cut(s) | 17, 120, 857, 1627, 1636, 3572 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3185, 3217, 3328, 3360 |
| AseI | ATTAAT | 1 cut(s) | 1416 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 810, 1825, 2472 |
| AspA2I | CCTAGG | 2 cut(s) | 1844, 3119 |
| AspLEI | GCGC | 4 cut(s) | 125, 196, 1522, 1632 |
| AspS9I | GGNCC | 4 cut(s) | 1118, 1435, 3406, 3665 |
| AsuC2I | CCSGG | 2 cut(s) | 587, 2542 |
| AsuII | TTCGAA | 1 cut(s) | 2039 |
| AvaI | CYCGRG | 2 cut(s) | 293, 2478 |
| AvaII | GGWCC | 3 cut(s) | 1118, 3406, 3665 |
| AvrII | CCTAGG | 2 cut(s) | 1844, 3119 |
| BaeGI | GKGCMC | 3 cut(s) | 454, 2414, 3426 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 281, 314, 2340, 2373 |
| BanI | GGYRCC | 1 cut(s) | 1519 |
| BanII | GRGCYC | 2 cut(s) | 168, 1089 |
| BauI | CACGAG | 1 cut(s) | 603 |
| BbsI | GAAGAC | 4 cut(s) | 2325, 2693, 2756, 3510 |
| Bbv12I | GWGCWC | 3 cut(s) | 168, 1089, 1425 |
| BbvI | GCAGC | 6 cut(s) | 29, 132, 844, 1614, 1623, 3559 |
| BccI | CCATC | 7 cut(s) | 54, 1810, 2048, 2884, 2947, 3265, 3647 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1704, 1738, 2555, 2589, 2707, 2741 |
| BciT130I | CCWGG | 4 cut(s) | 1533, 3015, 3413, 3663 |
| BciVI | GTATCC | 1 cut(s) | 82 |
| BclI | TGATCA | 3 cut(s) | 1741, 3328, 3646 |
| BcnI | CCSGG | 2 cut(s) | 587, 2542 |
| BcoDI | GTCTC | 5 cut(s) | 1469, 1942, 2405, 2662, 3212 |
| BfmI | CTRYAG | 3 cut(s) | 861, 2016, 3196 |
| BfoI | RGCGCY | 2 cut(s) | 197, 1523 |
| BfrI | CTTAAG | 1 cut(s) | 1835 |
| BfuAI | ACCTGC | 2 cut(s) | 1536, 1755 |
| BfuI | GTATCC | 1 cut(s) | 82 |
| BglII | AGATCT | 1 cut(s) | 537 |
| BisI | GCNGC | 8 cut(s) | 18, 121, 465, 858, 1628, 1637, 3573, 3576 |
| BlnI | CCTAGG | 2 cut(s) | 1844, 3119 |
| BlsI | GCNGC | 8 cut(s) | 19, 122, 466, 859, 1629, 1638, 3574, 3577 |
| Bme1390I | CCNGG | 6 cut(s) | 587, 1533, 2542, 3015, 3413, 3663 |
| Bme18I | GGWCC | 3 cut(s) | 1118, 3406, 3665 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2944 |
| BmeT110I | CYCGRG | 2 cut(s) | 293, 2478 |
| BmgT120I | GGNCC | 4 cut(s) | 1118, 1435, 3406, 3665 |
| BmiI | GGNNCC | 4 cut(s) | 1521, 3407, 3660, 3700 |
| BmrFI | CCNGG | 6 cut(s) | 587, 1533, 2542, 3015, 3413, 3663 |
| BmsI | GCATC | 8 cut(s) | 1285, 1623, 1677, 1712, 1830, 2048, 2950, 3307 |
| BpiI | GAAGAC | 4 cut(s) | 2325, 2693, 2756, 3510 |
| BpmI | CTGGAG | 1 cut(s) | 1752 |
| Bpu14I | TTCGAA | 1 cut(s) | 2039 |
| BpuEI | CTTGAG | 6 cut(s) | 1152, 1684, 1780, 2159, 2266, 3568 |
| BpuMI | CCSGG | 2 cut(s) | 587, 2542 |
| BsaAI | YACGTR | 1 cut(s) | 1369 |
| BsaBI | GATNNNNATC | 2 cut(s) | 227, 3113 |
| BsaHI | GRCGYC | 1 cut(s) | 1520 |
| BsaI | GGTCTC | 1 cut(s) | 3212 |
| BsaJI | CCNNGG | 7 cut(s) | 50, 351, 1844, 2477, 2661, 3119, 3694 |
| BsaWI | WCCGGW | 1 cut(s) | 2681 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 242, 272, 777, 807, 2173, 2203 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 264, 2018 |
| Bse1I | ACTGG | 6 cut(s) | 329, 679, 1869, 2206, 2832, 2922 |
| Bse3DI | GCAATG | 1 cut(s) | 3529 |
| Bse8I | GATNNNNATC | 2 cut(s) | 227, 3113 |
| BseAI | TCCGGA | 1 cut(s) | 2681 |
| BseBI | CCWGG | 4 cut(s) | 1533, 3015, 3413, 3663 |
| BseDI | CCNNGG | 7 cut(s) | 50, 351, 1844, 2477, 2661, 3119, 3694 |
| BseJI | GATNNNNATC | 2 cut(s) | 227, 3113 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 264, 2018 |
| BseMI | GCAATG | 1 cut(s) | 3529 |
| BseMII | CTCAG | 3 cut(s) | 62, 555, 3528 |
| BseNI | ACTGG | 6 cut(s) | 329, 679, 1869, 2206, 2832, 2922 |
| BseRI | GAGGAG | 3 cut(s) | 19, 96, 189 |
| BseSI | GKGCMC | 3 cut(s) | 454, 2414, 3426 |
| BseXI | GCAGC | 6 cut(s) | 29, 132, 844, 1614, 1623, 3559 |
| BseYI | CCCAGC | 1 cut(s) | 956 |
| BsgI | GTGCAG | 1 cut(s) | 139 |
| Bsh1236I | CGCG | 2 cut(s) | 125, 254 |
| BshFI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1777 |
| BshNI | GGYRCC | 1 cut(s) | 1519 |
| BsiHKAI | GWGCWC | 3 cut(s) | 168, 1089, 1425 |
| BsiHKCI | CYCGRG | 2 cut(s) | 293, 2478 |
| BsiSI | CCGG | 3 cut(s) | 587, 2542, 2682 |
| BslFI | GGGAC | 5 cut(s) | 333, 685, 975, 1770, 2212 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 264, 2018 |
| BsmAI | GTCTC | 5 cut(s) | 1469, 1942, 2405, 2662, 3212 |
| BsmFI | GGGAC | 5 cut(s) | 333, 685, 975, 1770, 2212 |
| BsmI | GAATGC | 3 cut(s) | 410, 499, 2612 |
| BsnI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1777 |
| Bso31I | GGTCTC | 1 cut(s) | 3212 |
| BsoBI | CYCGRG | 2 cut(s) | 293, 2478 |
| Bsp119I | TTCGAA | 1 cut(s) | 2039 |
| Bsp1286I | GDGCHC | 6 cut(s) | 168, 454, 1089, 1425, 2414, 3426 |
| Bsp13I | TCCGGA | 1 cut(s) | 2681 |
| Bsp1407I | TGTACA | 3 cut(s) | 1047, 2129, 2333 |
| Bsp143I | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| Bsp19I | CCATGG | 2 cut(s) | 50, 3694 |
| BspACI | CCGC | 6 cut(s) | 464, 2814, 3375, 3399, 3498, 3576 |
| BspANI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1777 |
| BspCNI | CTCAG | 3 cut(s) | 63, 554, 3529 |
| BspEI | TCCGGA | 1 cut(s) | 2681 |
| BspFNI | CGCG | 2 cut(s) | 125, 254 |
| BspHI | TCATGA | 5 cut(s) | 400, 520, 1030, 1072, 1558 |
| BspLI | GGNNCC | 4 cut(s) | 1521, 3407, 3660, 3700 |
| BspMAI | CTGCAG | 1 cut(s) | 3200 |
| BspMI | ACCTGC | 2 cut(s) | 1536, 1755 |
| BspPI | GGATC | 1 cut(s) | 1523 |
| BspQI | GCTCTTC | 1 cut(s) | 1094 |
| BspT104I | TTCGAA | 1 cut(s) | 2039 |
| BspT107I | GGYRCC | 1 cut(s) | 1519 |
| BspTI | CTTAAG | 1 cut(s) | 1835 |
| BspTNI | GGTCTC | 1 cut(s) | 3212 |
| BsrDI | GCAATG | 1 cut(s) | 3529 |
| BsrGI | TGTACA | 3 cut(s) | 1047, 2129, 2333 |
| BsrI | ACTGG | 6 cut(s) | 329, 679, 1869, 2206, 2832, 2922 |
| BssECI | CCNNGG | 7 cut(s) | 50, 351, 1844, 2477, 2661, 3119, 3694 |
| BssMI | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| BssNI | GRCGYC | 1 cut(s) | 1520 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 5 cut(s) | 50, 1844, 2661, 3119, 3694 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 4 cut(s) | 1533, 3015, 3413, 3663 |
| Bst6I | CTCTTC | 7 cut(s) | 37, 440, 528, 637, 1094, 3303, 3395 |
| BstACI | GRCGYC | 1 cut(s) | 1520 |
| BstAFI | CTTAAG | 1 cut(s) | 1835 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1480 |
| BstAUI | TGTACA | 3 cut(s) | 1047, 2129, 2333 |
| BstBAI | YACGTR | 1 cut(s) | 1369 |
| BstBI | TTCGAA | 1 cut(s) | 2039 |
| BstC8I | GCNNGC | 6 cut(s) | 778, 1101, 1236, 1634, 2443, 3703 |
| BstDSI | CCRYGG | 2 cut(s) | 50, 3694 |
| BstEII | GGTNACC | 1 cut(s) | 847 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2016 |
| BstFNI | CGCG | 2 cut(s) | 125, 254 |
| BstH2I | RGCGCY | 2 cut(s) | 197, 1523 |
| BstHHI | GCGC | 4 cut(s) | 125, 196, 1522, 1632 |
| BstKTI | GATC | 5 cut(s) | 540, 1531, 1744, 3331, 3649 |
| BstMAI | GTCTC | 5 cut(s) | 1469, 1942, 2405, 2662, 3212 |
| BstMBI | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 117, 607, 786, 1480, 1633, 1636 |
| BstNI | CCWGG | 4 cut(s) | 1533, 3015, 3413, 3663 |
| BstNSI | RCATGY | 5 cut(s) | 780, 1103, 1341, 2263, 2340 |
| BstPI | GGTNACC | 1 cut(s) | 847 |
| BstSCI | CCNGG | 6 cut(s) | 585, 1531, 2540, 3013, 3411, 3661 |
| BstSFI | CTRYAG | 3 cut(s) | 861, 2016, 3196 |
| BstSLI | GKGCMC | 3 cut(s) | 454, 2414, 3426 |
| BstUI | CGCG | 2 cut(s) | 125, 254 |
| BstV1I | GCAGC | 6 cut(s) | 29, 132, 844, 1614, 1623, 3559 |
| BstV2I | GAAGAC | 4 cut(s) | 2325, 2693, 2756, 3510 |
| BstX2I | RGATCY | 1 cut(s) | 537 |
| BstYI | RGATCY | 1 cut(s) | 537 |
| BsuI | GTATCC | 1 cut(s) | 82 |
| BsuRI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1777 |
| BtgI | CCRYGG | 2 cut(s) | 50, 3694 |
| BtsIMutI | CAGTG | 4 cut(s) | 2414, 2825, 3287, 3640 |
| BveI | ACCTGC | 2 cut(s) | 1536, 1755 |
| Cac8I | GCNNGC | 6 cut(s) | 778, 1101, 1236, 1634, 2443, 3703 |
| CciI | TCATGA | 5 cut(s) | 400, 520, 1030, 1072, 1558 |
| CfoI | GCGC | 4 cut(s) | 125, 196, 1522, 1632 |
| Cfr13I | GGNCC | 4 cut(s) | 1118, 1435, 3406, 3665 |
| CseI | GACGC | 4 cut(s) | 119, 243, 2474, 2723 |
| CsiI | ACCWGGT | 1 cut(s) | 3661 |
| Csp6I | GTAC | 8 cut(s) | 583, 1048, 1832, 2006, 2130, 2334, 2357, 3621 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1167, 1202 |
| CviQI | GTAC | 8 cut(s) | 583, 1048, 1832, 2006, 2130, 2334, 2357, 3621 |
| DinI | GGCGCC | 1 cut(s) | 1521 |
| DpnI | GATC | 5 cut(s) | 539, 1530, 1743, 3330, 3648 |
| DpnII | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| DraI | TTTAAA | 2 cut(s) | 1348, 3682 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2944 |
| Eam1104I | CTCTTC | 7 cut(s) | 37, 440, 528, 637, 1094, 3303, 3395 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2944 |
| EarI | CTCTTC | 7 cut(s) | 37, 440, 528, 637, 1094, 3303, 3395 |
| Ecl136II | GAGCTC | 2 cut(s) | 166, 1087 |
| Eco130I | CCWWGG | 5 cut(s) | 50, 1844, 2661, 3119, 3694 |
| Eco147I | AGGCCT | 1 cut(s) | 1173 |
| Eco24I | GRGCYC | 2 cut(s) | 168, 1089 |
| Eco31I | GGTCTC | 1 cut(s) | 3212 |
| Eco32I | GATATC | 3 cut(s) | 1333, 2234, 2592 |
| Eco47I | GGWCC | 3 cut(s) | 1118, 3406, 3665 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 2 cut(s) | 166, 1087 |
| Eco57I | CTGAAG | 2 cut(s) | 1075, 3376 |
| Eco88I | CYCGRG | 2 cut(s) | 293, 2478 |
| Eco91I | GGTNACC | 1 cut(s) | 847 |
| EcoICRI | GAGCTC | 2 cut(s) | 166, 1087 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2016 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1118 |
| EcoO65I | GGTNACC | 1 cut(s) | 847 |
| EcoRI | GAATTC | 1 cut(s) | 2861 |
| EcoRII | CCWGG | 4 cut(s) | 1531, 3013, 3411, 3661 |
| EcoRV | GATATC | 3 cut(s) | 1333, 2234, 2592 |
| EcoT14I | CCWWGG | 5 cut(s) | 50, 1844, 2661, 3119, 3694 |
| EcoT22I | ATGCAT | 2 cut(s) | 1300, 1476 |
| EcoT38I | GRGCYC | 2 cut(s) | 168, 1089 |
| EgeI | GGCGCC | 1 cut(s) | 1521 |
| EheI | GGCGCC | 1 cut(s) | 1521 |
| ErhI | CCWWGG | 5 cut(s) | 50, 1844, 2661, 3119, 3694 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 254, 286, 795, 827, 2429, 2461 |
| FaqI | GGGAC | 5 cut(s) | 333, 685, 975, 1770, 2212 |
| FbaI | TGATCA | 3 cut(s) | 1741, 3328, 3646 |
| FblI | GTMKAC | 1 cut(s) | 3231 |
| Fnu4HI | GCNGC | 8 cut(s) | 18, 121, 465, 858, 1628, 1637, 3573, 3576 |
| FriOI | GRGCYC | 2 cut(s) | 168, 1089 |
| Fsp4HI | GCNGC | 8 cut(s) | 18, 121, 465, 858, 1628, 1637, 3573, 3576 |
| GlaI | GCGC | 4 cut(s) | 124, 195, 1521, 1631 |
| GluI | GCNGC | 8 cut(s) | 18, 121, 465, 858, 1628, 1637, 3573, 3576 |
| GsaI | CCCAGC | 1 cut(s) | 960 |
| GsuI | CTGGAG | 1 cut(s) | 1752 |
| HaeII | RGCGCY | 2 cut(s) | 197, 1523 |
| HaeIII | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1777 |
| HapII | CCGG | 3 cut(s) | 587, 2542, 2682 |
| HgaI | GACGC | 4 cut(s) | 119, 243, 2474, 2723 |
| HhaI | GCGC | 4 cut(s) | 125, 196, 1522, 1632 |
| Hin1I | GRCGYC | 1 cut(s) | 1520 |
| Hin6I | GCGC | 4 cut(s) | 123, 194, 1520, 1630 |
| HinP1I | GCGC | 4 cut(s) | 123, 194, 1520, 1630 |
| HincII | GTYRAC | 3 cut(s) | 2923, 3298, 3353 |
| HindII | GTYRAC | 3 cut(s) | 2923, 3298, 3353 |
| HindIII | AAGCTT | 1 cut(s) | 1993 |
| HpaII | CCGG | 3 cut(s) | 587, 2542, 2682 |
| Hpy99I | CGWCG | 4 cut(s) | 3440, 3443, 3446, 3449 |
| HpyCH4IV | ACGT | 4 cut(s) | 1150, 1368, 1540, 2808 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 117, 607, 786, 1480, 1633, 1636 |
| HpySE526I | ACGT | 4 cut(s) | 1150, 1368, 1540, 2808 |
| Hsp92I | GRCGYC | 1 cut(s) | 1520 |
| HspAI | GCGC | 4 cut(s) | 123, 194, 1520, 1630 |
| KasI | GGCGCC | 1 cut(s) | 1519 |
| Kpn2I | TCCGGA | 1 cut(s) | 2681 |
| Ksp22I | TGATCA | 3 cut(s) | 1741, 3328, 3646 |
| Kzo9I | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| LguI | GCTCTTC | 1 cut(s) | 1094 |
| LmnI | GCTCC | 2 cut(s) | 1624, 3698 |
| Lsp1109I | GCAGC | 6 cut(s) | 29, 132, 844, 1614, 1623, 3559 |
| LweI | GCATC | 8 cut(s) | 1285, 1623, 1677, 1712, 1830, 2048, 2950, 3307 |
| MabI | ACCWGGT | 1 cut(s) | 3661 |
| MaeII | ACGT | 4 cut(s) | 1150, 1368, 1540, 2808 |
| MaeIII | GTNAC | 4 cut(s) | 847, 2823, 2913, 3191 |
| MalI | GATC | 5 cut(s) | 539, 1530, 1743, 3330, 3648 |
| MboI | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| MfeI | CAATTG | 2 cut(s) | 207, 720 |
| MflI | RGATCY | 1 cut(s) | 537 |
| MhlI | GDGCHC | 6 cut(s) | 168, 454, 1089, 1425, 2414, 3426 |
| MluI | ACGCGT | 1 cut(s) | 252 |
| Mly113I | GGCGCC | 1 cut(s) | 1520 |
| MlyI | GAGTC | 5 cut(s) | 1858, 2197, 2664, 2770, 3500 |
| MmeI | TCCRAC | 4 cut(s) | 66, 1965, 2105, 3692 |
| Mph1103I | ATGCAT | 2 cut(s) | 1300, 1476 |
| MroI | TCCGGA | 1 cut(s) | 2681 |
| MroXI | GAANNNNTTC | 3 cut(s) | 810, 1825, 2472 |
| MseI | TTAA | 9 cut(s) | 1043, 1347, 1416, 1812, 1836, 1910, 2562, 2742, 3681 |
| MslI | CAYNNNNRTG | 5 cut(s) | 152, 1430, 1563, 1619, 3456 |
| MspA1I | CMGCKG | 3 cut(s) | 1636, 3578, 3705 |
| MspCI | CTTAAG | 1 cut(s) | 1835 |
| MspI | CCGG | 3 cut(s) | 587, 2542, 2682 |
| MspR9I | CCNGG | 6 cut(s) | 587, 1533, 2542, 3015, 3413, 3663 |
| MunI | CAATTG | 2 cut(s) | 207, 720 |
| Mva1269I | GAATGC | 3 cut(s) | 410, 499, 2612 |
| MvaI | CCWGG | 4 cut(s) | 1533, 3015, 3413, 3663 |
| MvnI | CGCG | 2 cut(s) | 125, 254 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 117, 607, 786, 1480, 1633, 1636 |
| NarI | GGCGCC | 1 cut(s) | 1520 |
| NciI | CCSGG | 2 cut(s) | 587, 2542 |
| NcoI | CCATGG | 2 cut(s) | 50, 3694 |
| NdeII | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| NlaIV | GGNNCC | 4 cut(s) | 1521, 3407, 3660, 3700 |
| NmeAIII | GCCGAG | 1 cut(s) | 3488 |
| NmuCI | GTSAC | 3 cut(s) | 847, 2823, 3191 |
| NsiI | ATGCAT | 2 cut(s) | 1300, 1476 |
| NspI | RCATGY | 5 cut(s) | 780, 1103, 1341, 2263, 2340 |
| NspV | TTCGAA | 1 cut(s) | 2039 |
| PaeI | GCATGC | 2 cut(s) | 780, 1103 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 5 cut(s) | 400, 520, 1030, 1072, 1558 |
| PaqCI | CACCTGC | 1 cut(s) | 1755 |
| PceI | AGGCCT | 1 cut(s) | 1173 |
| PciI | ACATGT | 2 cut(s) | 2259, 2336 |
| PciSI | GCTCTTC | 1 cut(s) | 1094 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3441, 3444 |
| PctI | GAATGC | 3 cut(s) | 410, 499, 2612 |
| PdmI | GAANNNNTTC | 3 cut(s) | 810, 1825, 2472 |
| PfoI | TCCNGGA | 2 cut(s) | 1531, 3013 |
| PkrI | GCNGC | 8 cut(s) | 19, 122, 466, 859, 1629, 1638, 3574, 3577 |
| PleI | GAGTC | 5 cut(s) | 1857, 2196, 2664, 2769, 3500 |
| PluTI | GGCGCC | 1 cut(s) | 1523 |
| PpsI | GAGTC | 5 cut(s) | 1857, 2196, 2664, 2769, 3500 |
| Ppu21I | YACGTR | 1 cut(s) | 1369 |
| PpuMI | RGGWCCY | 1 cut(s) | 1118 |
| PscI | ACATGT | 2 cut(s) | 2259, 2336 |
| PshBI | ATTAAT | 1 cut(s) | 1416 |
| PsiI | TTATAA | 3 cut(s) | 554, 1572, 1986 |
| Psp124BI | GAGCTC | 2 cut(s) | 168, 1089 |
| Psp5II | RGGWCCY | 1 cut(s) | 1118 |
| Psp6I | CCWGG | 4 cut(s) | 1531, 3013, 3411, 3661 |
| PspEI | GGTNACC | 1 cut(s) | 847 |
| PspFI | CCCAGC | 1 cut(s) | 956 |
| PspGI | CCWGG | 4 cut(s) | 1531, 3013, 3411, 3661 |
| PspN4I | GGNNCC | 4 cut(s) | 1521, 3407, 3660, 3700 |
| PspPI | GGNCC | 4 cut(s) | 1118, 1435, 3406, 3665 |
| PspPPI | RGGWCCY | 1 cut(s) | 1118 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PstI | CTGCAG | 1 cut(s) | 3200 |
| PsuI | RGATCY | 1 cut(s) | 537 |
| PvuII | CAGCTG | 2 cut(s) | 1636, 3705 |
| RsaI | GTAC | 8 cut(s) | 584, 1049, 1833, 2007, 2131, 2335, 2358, 3622 |
| RsaNI | GTAC | 8 cut(s) | 583, 1048, 1832, 2006, 2130, 2334, 2357, 3621 |
| RseI | CAYNNNNRTG | 5 cut(s) | 152, 1430, 1563, 1619, 3456 |
| SacI | GAGCTC | 2 cut(s) | 168, 1089 |
| SapI | GCTCTTC | 1 cut(s) | 1094 |
| SaqAI | TTAA | 9 cut(s) | 1043, 1347, 1416, 1812, 1836, 1910, 2562, 2742, 3681 |
| SatI | GCNGC | 8 cut(s) | 18, 121, 465, 858, 1628, 1637, 3573, 3576 |
| Sau3AI | GATC | 5 cut(s) | 537, 1528, 1741, 3328, 3646 |
| Sau96I | GGNCC | 4 cut(s) | 1118, 1435, 3406, 3665 |
| SchI | GAGTC | 5 cut(s) | 1858, 2197, 2664, 2770, 3500 |
| ScrFI | CCNGG | 6 cut(s) | 587, 1533, 2542, 3015, 3413, 3663 |
| SduI | GDGCHC | 6 cut(s) | 168, 454, 1089, 1425, 2414, 3426 |
| SexAI | ACCWGGT | 1 cut(s) | 3661 |
| SfaNI | GCATC | 8 cut(s) | 1285, 1623, 1677, 1712, 1830, 2048, 2950, 3307 |
| SfcI | CTRYAG | 3 cut(s) | 861, 2016, 3196 |
| SfoI | GGCGCC | 1 cut(s) | 1521 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SfuI | TTCGAA | 1 cut(s) | 2039 |
| SinI | GGWCC | 3 cut(s) | 1118, 3406, 3665 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 152, 1430, 1563, 1619, 3456 |
| SmlI | CTYRAG | 8 cut(s) | 293, 1167, 1663, 1759, 1835, 2138, 2245, 3547 |
| SmoI | CTYRAG | 8 cut(s) | 293, 1167, 1663, 1759, 1835, 2138, 2245, 3547 |
| SphI | GCATGC | 2 cut(s) | 780, 1103 |
| SseBI | AGGCCT | 1 cut(s) | 1173 |
| SsiI | CCGC | 6 cut(s) | 464, 2814, 3375, 3399, 3498, 3576 |
| SspDI | GGCGCC | 1 cut(s) | 1519 |
| SspI | AATATT | 1 cut(s) | 1447 |
| SstI | GAGCTC | 2 cut(s) | 168, 1089 |
| StuI | AGGCCT | 1 cut(s) | 1173 |
| StyD4I | CCNGG | 6 cut(s) | 585, 1531, 2540, 3013, 3411, 3661 |
| StyI | CCWWGG | 5 cut(s) | 50, 1844, 2661, 3119, 3694 |
| TaiI | ACGT | 4 cut(s) | 1153, 1371, 1543, 2811 |
| TatI | WGTACW | 5 cut(s) | 1047, 1831, 2005, 2129, 2333 |
| TauI | GCSGC | 2 cut(s) | 467, 3578 |
| Tru1I | TTAA | 9 cut(s) | 1043, 1347, 1416, 1812, 1836, 1910, 2562, 2742, 3681 |
| Tru9I | TTAA | 9 cut(s) | 1043, 1347, 1416, 1812, 1836, 1910, 2562, 2742, 3681 |
| TscAI | CASTG | 4 cut(s) | 2414, 2832, 3294, 3647 |
| TseFI | GTSAC | 3 cut(s) | 847, 2823, 3191 |
| TseI | GCWGC | 6 cut(s) | 17, 120, 857, 1627, 1636, 3572 |
| Tsp45I | GTSAC | 3 cut(s) | 847, 2823, 3191 |
| TspGWI | ACGGA | 1 cut(s) | 1457 |
| TspRI | CASTG | 4 cut(s) | 2414, 2832, 3294, 3647 |
| Vha464I | CTTAAG | 1 cut(s) | 1835 |
| VpaK11BI | GGWCC | 3 cut(s) | 1118, 3406, 3665 |
| VspI | ATTAAT | 1 cut(s) | 1416 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2016 |
| XceI | RCATGY | 5 cut(s) | 780, 1103, 1341, 2263, 2340 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 268 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmaJI | CCTAGG | 2 cut(s) | 1844, 3119 |
| XmiI | GTMKAC | 1 cut(s) | 3231 |
| XmnI | GAANNNNTTC | 3 cut(s) | 810, 1825, 2472 |
| Zsp2I | ATGCAT | 2 cut(s) | 1300, 1476 |