RchiOBHm_Chr1g0323501

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000105
Physical Location & Seq
Forward (+)
10968471 .. 10971123
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1212 bp
ATGGAATGTTTCGAGGAAACTGATGTGAATAGTGGGTCTGCAATAGAAATTTCAACTACCCATGATCGCATAAAATATGTGAGAGGTTCAATCTTTCATGGATGCGAAGCAGTTTGGGGATCTTCAAATAAGTTCCTGCCTTCTGGATTGGTGCAAAAAGTGAATACAGCGCCAATGTGTTTCTTCTTGCCTATATCTGGTCTGCGTAATTTAACATATCTGAACTTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGCGACCTTGAATCTAAGTGGAAACAATTTTGTTCGTCTTCCTCCAGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTTCAAGACTTGTCAGACCTTCCATCAAATAGTATACTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACCTGTTTGATGCATCGAATTTGAACAGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAATGGCAATCAAGGGTGCAATAACATAGCATTTGAAATGCTGATGACAGTCATGTATCAGGCAATCTCTAATAAGAGGGAAACTTTTCAAATTGTAATTCCTGGATGTTATATTCCTGACTGGTTCAACCATTGGAGTTTTGGGTGTTCATTAAGTGTATCTCTACCTGCACATTGGAATAACAGTCAGTTTATGGGATTTGCTTTGTGTGCGGTTTTTGTACTCCACGAGCACCAACGGGTGGATGAGCTTTATATAGATGAATTTAAGACTTTTAATGCAACACATCATCTTGTATGTTGCCTGAAGCTCAATGGAAGAGAATTGGAAGTATACGGCAGACAGCCTGCATTTCGCTTTAGTGAAAATTTTTGCCAGGTTGAGTCAGATCATCTGTGGCTATTCTATGTATCTCGTGATAAGTACTTTGGTATAGAGTGGTTGCCTAATAGTTGCAGTCAGGTTGAGTTCTTATATGAAACCAGAGGGCCAGGTCTGAAGGTGAAGGAGTGTGGAGTCCATCTGATATATGAGCAAGATGTGCAAGAGTTGAACCAAACAACAACTCAATCAAGCAGTAGGATGTCTTTTTATGAGGATGTATTGATTGGTTTTGACCTTCCAGTTGCAGGGGAAACCAGTGGCACTGGTAGCAGAACTTGCATGCTTGAAGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

403

Amino Acids

45.72

Weight (kDa)

5.18

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 211 - 359 5.6e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 706
AccB7I CCANNNNNTGG 2 cut(s) 338, 772
AccI GTMKAC 2 cut(s) 421, 864
AciI CCGC 1 cut(s) 743
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 5 cut(s) 48, 266, 478, 794, 898
AcuI CTGAAG 2 cut(s) 857, 1049
AfaI GTAC 3 cut(s) 448, 753, 956
AfiI CCNNNNNNNGG 4 cut(s) 197, 338, 772, 1160
AjnI CCWGG 4 cut(s) 331, 631, 906, 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 355, 781, 841
AluI AGCT 3 cut(s) 355, 781, 841
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 127
AoxI GGCC 1 cut(s) 1019
ApoI RAATTY 5 cut(s) 48, 266, 478, 794, 898
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 1019
AsuHPI GGTGA 2 cut(s) 257, 1045
BauI CACGAG 2 cut(s) 758, 945
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 765
BccI CCATC 3 cut(s) 418, 434, 1059
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 4 cut(s) 333, 633, 908, 1023
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 706
BmcAI AGTACT 1 cut(s) 956
Bme1390I CCNGG 4 cut(s) 333, 633, 908, 1023
BmgT120I GGNCC 1 cut(s) 1019
BmrFI CCNGG 4 cut(s) 333, 633, 908, 1023
BmsI GCATC 3 cut(s) 92, 460, 482
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 247, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 338, 772, 1160
Bse1I ACTGG 4 cut(s) 656, 1154, 1170, 1183
BseBI CCWGG 4 cut(s) 333, 633, 908, 1023
BseGI GGATG 5 cut(s) 107, 641, 781, 1119, 1135
BseLI CCNNNNNNNGG 4 cut(s) 197, 338, 772, 1160
BseNI ACTGG 4 cut(s) 656, 1154, 1170, 1183
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 1 cut(s) 1021
BsiHKAI GWGCWC 1 cut(s) 765
BslI CCNNNNNNNGG 4 cut(s) 197, 338, 772, 1160
BsmAI GTCTC 1 cut(s) 379
BsnI GGCC 1 cut(s) 1021
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 3 cut(s) 64, 119, 919
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 1021
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 1 cut(s) 127
BsrI ACTGG 4 cut(s) 656, 1154, 1170, 1183
BssMI GATC 3 cut(s) 64, 119, 919
BssNAI GTATAC 2 cut(s) 422, 865
BssSI CACGAG 2 cut(s) 758, 945
Bst1107I GTATAC 2 cut(s) 422, 865
Bst2BI CACGAG 2 cut(s) 758, 945
Bst2UI CCWGG 4 cut(s) 333, 633, 908, 1023
Bst4CI ACNGT 2 cut(s) 580, 716
Bst6I CTCTTC 1 cut(s) 844
BstAPI GCANNNNNTGC 2 cut(s) 1072, 1191
BstC8I GCNNGC 2 cut(s) 879, 1196
BstDEI CTNAG 2 cut(s) 302, 351
BstF5I GGATG 5 cut(s) 107, 641, 781, 1119, 1135
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 3 cut(s) 67, 122, 922
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 64, 119, 919
BstMWI GCNNNNNNNGC 5 cut(s) 352, 740, 1072, 1182, 1191
BstNI CCWGG 4 cut(s) 333, 633, 908, 1023
BstNSI RCATGY 1 cut(s) 1198
BstSCI CCNGG 4 cut(s) 331, 631, 906, 1021
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BstZ17I GTATAC 2 cut(s) 422, 865
BsuRI GGCC 1 cut(s) 1021
BtsCI GGATG 5 cut(s) 107, 641, 781, 1119, 1135
BtsIMutI CAGTG 3 cut(s) 452, 1176, 1177
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 2 cut(s) 879, 1196
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 1019
Csp6I GTAC 3 cut(s) 447, 752, 955
CviAII CATG 4 cut(s) 62, 98, 583, 1195
CviJI RGCY 6 cut(s) 355, 781, 841, 877, 931, 1021
CviKI_1 RGCY 6 cut(s) 355, 781, 841, 877, 931, 1021
CviQI GTAC 3 cut(s) 447, 752, 955
DdeI CTNAG 2 cut(s) 302, 351
DpnI GATC 3 cut(s) 66, 121, 921
DpnII GATC 3 cut(s) 64, 119, 919
Eam1104I CTCTTC 1 cut(s) 844
EarI CTCTTC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 857, 1049
EcoRII CCWGG 4 cut(s) 331, 631, 906, 1021
EcoT22I ATGCAT 1 cut(s) 475
FaeI CATG 4 cut(s) 65, 101, 586, 1198
FatI CATG 4 cut(s) 61, 97, 582, 1194
FblI GTMKAC 2 cut(s) 421, 864
FokI GGATG 5 cut(s) 114, 648, 788, 1126, 1142
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 1021
HhaI GCGC 1 cut(s) 172
Hin1II CATG 4 cut(s) 65, 101, 586, 1198
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 3 cut(s) 298, 914, 1047
HphI GGTGA 2 cut(s) 257, 1045
Hpy166II GTNNAC 2 cut(s) 422, 865
Hpy188I TCNGA 5 cut(s) 222, 403, 919, 1029, 1056
Hpy188III TCNNGA 4 cut(s) 144, 392, 647, 947
Hpy8I GTNNAC 2 cut(s) 422, 865
HpyAV CCTTC 6 cut(s) 150, 242, 416, 1024, 1030, 1160
HpyCH4III ACNGT 2 cut(s) 580, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 352, 740, 1072, 1182, 1191
HpyF3I CTNAG 2 cut(s) 302, 351
Hsp92II CATG 4 cut(s) 65, 101, 586, 1198
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 3 cut(s) 64, 119, 919
LmnI GCTCC 1 cut(s) 251
LweI GCATC 3 cut(s) 92, 460, 482
MaeI CTAG 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 66, 121, 921
MboI GATC 3 cut(s) 64, 119, 919
MboII GAAGA 4 cut(s) 114, 175, 317, 861
MfeI CAATTG 1 cut(s) 517
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 765
MlyI GAGTC 2 cut(s) 923, 1056
MnlI CCTC 7 cut(s) 7, 77, 292, 339, 600, 1010, 1120
Mph1103I ATGCAT 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 7 cut(s) 212, 366, 431, 491, 683, 798, 807
MspR9I CCNGG 4 cut(s) 333, 633, 908, 1023
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 4 cut(s) 333, 633, 908, 1023
MwoI GCNNNNNNNGC 5 cut(s) 352, 740, 1072, 1182, 1191
NdeII GATC 3 cut(s) 64, 119, 919
NlaIII CATG 4 cut(s) 65, 101, 586, 1198
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 1198
PaeI GCATGC 1 cut(s) 1198
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 1 cut(s) 298
PflMI CCANNNNNTGG 2 cut(s) 338, 772
PfoI TCCNGGA 1 cut(s) 631
PleI GAGTC 2 cut(s) 922, 1055
PpsI GAGTC 2 cut(s) 922, 1055
Psp6I CCWGG 4 cut(s) 331, 631, 906, 1021
PspGI CCWGG 4 cut(s) 331, 631, 906, 1021
PspPI GGNCC 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 3 cut(s) 448, 753, 956
RsaNI GTAC 3 cut(s) 447, 752, 955
SaqAI TTAA 7 cut(s) 212, 366, 431, 491, 683, 798, 807
Sau3AI GATC 3 cut(s) 64, 119, 919
Sau96I GGNCC 1 cut(s) 1019
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 2 cut(s) 923, 1056
ScrFI CCNGG 4 cut(s) 333, 633, 908, 1023
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 3 cut(s) 92, 460, 482
SmlI CTYRAG 2 cut(s) 226, 356
SmoI CTYRAG 2 cut(s) 226, 356
SphI GCATGC 1 cut(s) 1198
SsiI CCGC 1 cut(s) 743
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 4 cut(s) 331, 631, 906, 1021
TaaI ACNGT 2 cut(s) 580, 716
TaqI TCGA 2 cut(s) 12, 476
TatI WGTACW 3 cut(s) 446, 751, 954
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 7 cut(s) 212, 366, 431, 491, 683, 798, 807
Tru9I TTAA 7 cut(s) 212, 366, 431, 491, 683, 798, 807
TscAI CASTG 3 cut(s) 459, 1177, 1183
TspDTI ATGAA 5 cut(s) 86, 502, 669, 807, 1023
TspRI CASTG 3 cut(s) 459, 1177, 1183
Van91I CCANNNNNTGG 2 cut(s) 338, 772
XapI RAATTY 5 cut(s) 48, 266, 478, 794, 898
XceI RCATGY 1 cut(s) 1198
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmiI GTMKAC 2 cut(s) 421, 864
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 1 cut(s) 425
ZrmI AGTACT 1 cut(s) 956
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.