RchiOBHm_Chr4g0402771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000075
Physical Location & Seq
Forward (+)
21540424 .. 21540768
345 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37454

Sequence Viewer

Length: 291 bp
ATGTTGCGGCGCCAGGCTAGGGATTTGGGCGTGTTCCCCATGGGGAAAAAGGGGTTCTATTACCTGTGTAGGTTTCCGATATACGAGAGGTTTGAACTTGGGAGGCGTCTGGATGAGGGGCTGTTTCATTGTTCATCCGATATGCCTAGTGAGGCTGCTAGCAAGAGCGAAGCGCCATACGCTAAGGTGGATACCGATGTCATTATCATTGAGTTGTTGCGAGAATCGGAGACGGCAAGGCGGTGTGACGTCGAGCTTCCGGGTAAGGAGGTACATGTGACTGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.04

Weight (kDa)

6.29

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 9
AciI CCGC 2 cut(s) 7, 241
AcyI GRCGYC 3 cut(s) 10, 106, 249
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 2 cut(s) 12, 175
AsuC2I CCSGG 1 cut(s) 261
AsuNHI GCTAGC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BanI GGYRCC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 18, 147, 159
BfoI RGCGCY 2 cut(s) 13, 176
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 2 cut(s) 8, 156
BlsI GCNGC 2 cut(s) 9, 157
Bme1390I CCNGG 2 cut(s) 14, 261
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 14, 261
BmtI GCTAGC 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 261
BsaHI GRCGYC 3 cut(s) 10, 106, 249
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 118, 134
BseLI CCNNNNNNNGG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 2 cut(s) 7, 241
BspLI GGNNCC 1 cut(s) 11
BspOI GCTAGC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 39
BssNI GRCGYC 3 cut(s) 10, 106, 249
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 14
BstACI GRCGYC 3 cut(s) 10, 106, 249
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 118, 134
BstH2I RGCGCY 2 cut(s) 13, 176
BstHHI GCGC 2 cut(s) 12, 175
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 12, 259
BstV1I GCAGC 1 cut(s) 142
BsuI GTATCC 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 118, 134
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 2 cut(s) 12, 175
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 272
CviAII CATG 2 cut(s) 40, 275
CviJI RGCY 4 cut(s) 17, 121, 155, 256
CviKI_1 RGCY 4 cut(s) 17, 121, 155, 256
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 183
DinI GGCGCC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 43, 278
FaiI YATR 5 cut(s) 41, 82, 143, 178, 276
FatI CATG 2 cut(s) 39, 274
Fnu4HI GCNGC 2 cut(s) 8, 156
FokI GGATG 2 cut(s) 121, 125
Fsp4HI GCNGC 2 cut(s) 8, 156
FspBI CTAG 3 cut(s) 18, 147, 159
GlaI GCGC 2 cut(s) 11, 174
GluI GCNGC 2 cut(s) 8, 156
HaeII RGCGCY 2 cut(s) 13, 176
HapII CCGG 1 cut(s) 260
HgaI GACGC 1 cut(s) 95
HhaI GCGC 2 cut(s) 12, 175
Hin1I GRCGYC 3 cut(s) 10, 106, 249
Hin1II CATG 2 cut(s) 43, 278
Hin6I GCGC 2 cut(s) 10, 173
HinP1I GCGC 2 cut(s) 10, 173
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 260
Hpy188I TCNGA 3 cut(s) 78, 139, 229
Hpy188III TCNNGA 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 3 cut(s) 10, 106, 249
Hsp92II CATG 2 cut(s) 43, 278
HspAI GCGC 2 cut(s) 10, 173
KasI GGCGCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 26, 77, 95, 267, 273
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 3 cut(s) 18, 147, 159
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 245, 277
Mly113I GGCGCC 1 cut(s) 10
MnlI CCTC 5 cut(s) 81, 96, 109, 145, 262
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 14, 261
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 179
NarI GGCGCC 1 cut(s) 10
NciI CCSGG 1 cut(s) 261
NcoI CCATGG 1 cut(s) 39
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 43, 278
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 2 cut(s) 245, 277
NspI RCATGY 1 cut(s) 278
PciI ACATGT 1 cut(s) 274
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 9, 157
PluTI GGCGCC 1 cut(s) 13
PscI ACATGT 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SatI GCNGC 2 cut(s) 8, 156
ScrFI CCNGG 2 cut(s) 14, 261
SetI ASST 7 cut(s) 66, 74, 92, 189, 252, 258, 273
SfoI GGCGCC 1 cut(s) 11
SsiI CCGC 2 cut(s) 7, 241
SspDI GGCGCC 1 cut(s) 9
SspMI CTAG 3 cut(s) 18, 147, 159
StyD4I CCNGG 2 cut(s) 12, 259
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 252
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 1 cut(s) 224
TseFI GTSAC 2 cut(s) 245, 277
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 2 cut(s) 245, 277
TspDTI ATGAA 2 cut(s) 116, 123
XceI RCATGY 1 cut(s) 278
XspI CTAG 3 cut(s) 18, 147, 159
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.