ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 204 |
| AccIII | TCCGGA | 1 cut(s) | 487 |
| AciI | CCGC | 5 cut(s) | 233, 236, 242, 245, 331 |
| AclWI | GGATC | 1 cut(s) | 498 |
| AcoI | YGGCCR | 3 cut(s) | 65, 209, 325 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcuI | CTGAAG | 1 cut(s) | 600 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 43, 204, 334, 550 |
| AgsI | TTSAA | 4 cut(s) | 148, 175, 370, 509 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 330, 362 |
| AluBI | AGCT | 5 cut(s) | 9, 17, 23, 132, 572 |
| AluI | AGCT | 5 cut(s) | 9, 17, 23, 132, 572 |
| AlwI | GGATC | 1 cut(s) | 498 |
| Ama87I | CYCGRG | 1 cut(s) | 18 |
| Aor13HI | TCCGGA | 1 cut(s) | 487 |
| AoxI | GGCC | 5 cut(s) | 65, 209, 325, 394, 565 |
| ApeKI | GCWGC | 1 cut(s) | 9 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 439, 471 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 613 |
| AspLEI | GCGC | 2 cut(s) | 103, 585 |
| AspS9I | GGNCC | 2 cut(s) | 394, 598 |
| AsuHPI | GGTGA | 4 cut(s) | 23, 33, 292, 334 |
| AvaI | CYCGRG | 1 cut(s) | 18 |
| AvaII | GGWCC | 1 cut(s) | 598 |
| AxyI | CCTNAGG | 1 cut(s) | 546 |
| BaeGI | GKGCMC | 1 cut(s) | 544 |
| BalI | TGGCCA | 1 cut(s) | 211 |
| BbvCI | CCTCAGC | 1 cut(s) | 636 |
| BccI | CCATC | 1 cut(s) | 521 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 117, 151 |
| BfaI | CTAG | 3 cut(s) | 249, 453, 569 |
| BfmI | CTRYAG | 1 cut(s) | 388 |
| BfoI | RGCGCY | 1 cut(s) | 104 |
| BglII | AGATCT | 1 cut(s) | 591 |
| BisI | GCNGC | 5 cut(s) | 10, 234, 243, 246, 332 |
| BlsI | GCNGC | 5 cut(s) | 11, 235, 244, 247, 333 |
| Bme18I | GGWCC | 1 cut(s) | 598 |
| BmeT110I | CYCGRG | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 2 cut(s) | 394, 598 |
| BmiI | GGNNCC | 1 cut(s) | 395 |
| BmsI | GCATC | 3 cut(s) | 109, 409, 622 |
| BpmI | CTGGAG | 1 cut(s) | 57 |
| Bpu10I | CCTNAGC | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 1 cut(s) | 104 |
| BsaWI | WCCGGW | 1 cut(s) | 487 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 43, 204, 334, 550 |
| Bse118I | RCCGGY | 2 cut(s) | 43, 327 |
| Bse21I | CCTNAGG | 1 cut(s) | 546 |
| Bse3DI | GCAATG | 1 cut(s) | 592 |
| BseAI | TCCGGA | 1 cut(s) | 487 |
| BseDI | CCNNGG | 1 cut(s) | 104 |
| BseGI | GGATG | 2 cut(s) | 300, 559 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 43, 204, 334, 550 |
| BseMI | GCAATG | 1 cut(s) | 592 |
| BseMII | CTCAG | 1 cut(s) | 627 |
| BseSI | GKGCMC | 1 cut(s) | 544 |
| BseX3I | CGGCCG | 1 cut(s) | 325 |
| Bsh1285I | CGRYCG | 1 cut(s) | 328 |
| BshFI | GGCC | 5 cut(s) | 67, 211, 327, 396, 567 |
| BsiEI | CGRYCG | 1 cut(s) | 328 |
| BsiHKCI | CYCGRG | 1 cut(s) | 18 |
| BsiSI | CCGG | 4 cut(s) | 44, 64, 328, 488 |
| BslFI | GGGAC | 1 cut(s) | 122 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 43, 204, 334, 550 |
| BsmFI | GGGAC | 1 cut(s) | 122 |
| BsnI | GGCC | 5 cut(s) | 67, 211, 327, 396, 567 |
| BsoBI | CYCGRG | 1 cut(s) | 18 |
| Bsp1286I | GDGCHC | 1 cut(s) | 544 |
| Bsp13I | TCCGGA | 1 cut(s) | 487 |
| Bsp143I | GATC | 3 cut(s) | 321, 490, 591 |
| BspACI | CCGC | 5 cut(s) | 233, 236, 242, 245, 331 |
| BspANI | GGCC | 5 cut(s) | 67, 211, 327, 396, 567 |
| BspCNI | CTCAG | 1 cut(s) | 628 |
| BspEI | TCCGGA | 1 cut(s) | 487 |
| BspLI | GGNNCC | 1 cut(s) | 395 |
| BspPI | GGATC | 1 cut(s) | 498 |
| BsrDI | GCAATG | 1 cut(s) | 592 |
| BsrFI | RCCGGY | 2 cut(s) | 43, 327 |
| BssAI | RCCGGY | 2 cut(s) | 43, 327 |
| BssECI | CCNNGG | 1 cut(s) | 104 |
| BssMI | GATC | 3 cut(s) | 321, 490, 591 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| Bst4CI | ACNGT | 3 cut(s) | 170, 389, 505 |
| Bst6I | CTCTTC | 3 cut(s) | 296, 581, 619 |
| BstC8I | GCNNGC | 1 cut(s) | 329 |
| BstDEI | CTNAG | 4 cut(s) | 2, 86, 546, 636 |
| BstF5I | GGATG | 2 cut(s) | 300, 559 |
| BstH2I | RGCGCY | 1 cut(s) | 104 |
| BstHHI | GCGC | 2 cut(s) | 103, 585 |
| BstKTI | GATC | 3 cut(s) | 324, 493, 594 |
| BstMBI | GATC | 3 cut(s) | 321, 490, 591 |
| BstMCI | CGRYCG | 1 cut(s) | 328 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 233, 239, 242 |
| BstSFI | CTRYAG | 1 cut(s) | 388 |
| BstSLI | GKGCMC | 1 cut(s) | 544 |
| BstX2I | RGATCY | 2 cut(s) | 490, 591 |
| BstYI | RGATCY | 2 cut(s) | 490, 591 |
| BstZI | CGGCCG | 1 cut(s) | 325 |
| Bsu36I | CCTNAGG | 1 cut(s) | 546 |
| BsuRI | GGCC | 5 cut(s) | 67, 211, 327, 396, 567 |
| BtsCI | GGATG | 2 cut(s) | 300, 559 |
| BtsI | GCAGTG | 2 cut(s) | 234, 279 |
| BtsIMutI | CAGTG | 2 cut(s) | 234, 279 |
| Cac8I | GCNNGC | 1 cut(s) | 329 |
| CfoI | GCGC | 2 cut(s) | 103, 585 |
| Cfr10I | RCCGGY | 2 cut(s) | 43, 327 |
| Cfr13I | GGNCC | 2 cut(s) | 394, 598 |
| CpoI | CGGWCCG | 1 cut(s) | 598 |
| CspI | CGGWCCG | 1 cut(s) | 598 |
| DdeI | CTNAG | 4 cut(s) | 2, 86, 546, 636 |
| DpnI | GATC | 3 cut(s) | 323, 492, 593 |
| DpnII | GATC | 3 cut(s) | 321, 490, 591 |
| EaeI | YGGCCR | 3 cut(s) | 65, 209, 325 |
| EagI | CGGCCG | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 3 cut(s) | 296, 581, 619 |
| EarI | CTCTTC | 3 cut(s) | 296, 581, 619 |
| EclXI | CGGCCG | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco32I | GATATC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 598 |
| Eco52I | CGGCCG | 1 cut(s) | 325 |
| Eco57I | CTGAAG | 1 cut(s) | 600 |
| Eco81I | CCTNAGG | 1 cut(s) | 546 |
| Eco88I | CYCGRG | 1 cut(s) | 18 |
| EcoO109I | RGGNCCY | 1 cut(s) | 394 |
| EcoRV | GATATC | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaiI | YATR | 2 cut(s) | 359, 627 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 408, 440 |
| FaqI | GGGAC | 1 cut(s) | 122 |
| Fnu4HI | GCNGC | 5 cut(s) | 10, 234, 243, 246, 332 |
| FokI | GGATG | 2 cut(s) | 307, 566 |
| Fsp4HI | GCNGC | 5 cut(s) | 10, 234, 243, 246, 332 |
| FspBI | CTAG | 3 cut(s) | 249, 453, 569 |
| GlaI | GCGC | 2 cut(s) | 102, 584 |
| GluI | GCNGC | 5 cut(s) | 10, 234, 243, 246, 332 |
| GsuI | CTGGAG | 1 cut(s) | 57 |
| HaeII | RGCGCY | 1 cut(s) | 104 |
| HaeIII | GGCC | 5 cut(s) | 67, 211, 327, 396, 567 |
| HapII | CCGG | 4 cut(s) | 44, 64, 328, 488 |
| HhaI | GCGC | 2 cut(s) | 103, 585 |
| Hin6I | GCGC | 2 cut(s) | 101, 583 |
| HinP1I | GCGC | 2 cut(s) | 101, 583 |
| HincII | GTYRAC | 1 cut(s) | 498 |
| HindII | GTYRAC | 1 cut(s) | 498 |
| HindIII | AAGCTT | 1 cut(s) | 130 |
| HinfI | GANTC | 2 cut(s) | 60, 162 |
| HpaII | CCGG | 4 cut(s) | 44, 64, 328, 488 |
| HphI | GGTGA | 4 cut(s) | 23, 33, 292, 334 |
| Hpy166II | GTNNAC | 1 cut(s) | 498 |
| Hpy188I | TCNGA | 4 cut(s) | 59, 256, 472, 608 |
| Hpy188III | TCNNGA | 1 cut(s) | 488 |
| Hpy8I | GTNNAC | 1 cut(s) | 498 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 266 |
| HpyAV | CCTTC | 2 cut(s) | 48, 355 |
| HpyCH4III | ACNGT | 3 cut(s) | 170, 389, 505 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 3 cut(s) | 12, 191, 361 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 233, 239, 242 |
| HpyF3I | CTNAG | 4 cut(s) | 2, 86, 546, 636 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| HspAI | GCGC | 2 cut(s) | 101, 583 |
| Kpn2I | TCCGGA | 1 cut(s) | 487 |
| KroI | GCCGGC | 1 cut(s) | 327 |
| KroNI | GCCGGC | 1 cut(s) | 329 |
| Kzo9I | GATC | 3 cut(s) | 321, 490, 591 |
| LmnI | GCTCC | 1 cut(s) | 127 |
| LpnPI | CCDG | 9 cut(s) | 9, 57, 77, 87, 320, 341, 362, 501, 565 |
| LweI | GCATC | 3 cut(s) | 109, 409, 622 |
| MaeI | CTAG | 3 cut(s) | 249, 453, 569 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MalI | GATC | 3 cut(s) | 323, 492, 593 |
| MboI | GATC | 3 cut(s) | 321, 490, 591 |
| MboII | GAAGA | 6 cut(s) | 46, 171, 313, 454, 568, 606 |
| MfeI | CAATTG | 1 cut(s) | 192 |
| MflI | RGATCY | 2 cut(s) | 490, 591 |
| MhlI | GDGCHC | 1 cut(s) | 544 |
| MlsI | TGGCCA | 1 cut(s) | 211 |
| MluCI | AATT | 2 cut(s) | 192, 200 |
| MluNI | TGGCCA | 1 cut(s) | 211 |
| MmeI | TCCRAC | 2 cut(s) | 159, 272 |
| MnlI | CCTC | 9 cut(s) | 44, 81, 149, 175, 297, 476, 544, 622, 631 |
| Mox20I | TGGCCA | 1 cut(s) | 211 |
| MroI | TCCGGA | 1 cut(s) | 487 |
| MroNI | GCCGGC | 1 cut(s) | 327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 613 |
| MscI | TGGCCA | 1 cut(s) | 211 |
| MseI | TTAA | 1 cut(s) | 399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 630 |
| Msp20I | TGGCCA | 1 cut(s) | 211 |
| MspI | CCGG | 4 cut(s) | 44, 64, 328, 488 |
| MunI | CAATTG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 233, 239, 242 |
| NaeI | GCCGGC | 1 cut(s) | 329 |
| NdeII | GATC | 3 cut(s) | 321, 490, 591 |
| NgoMIV | GCCGGC | 1 cut(s) | 327 |
| NlaIV | GGNNCC | 1 cut(s) | 395 |
| NmeAIII | GCCGAG | 1 cut(s) | 164 |
| PaeR7I | CTCGAG | 1 cut(s) | 18 |
| PdiI | GCCGGC | 1 cut(s) | 329 |
| PdmI | GAANNNNTTC | 1 cut(s) | 613 |
| PfeI | GAWTC | 2 cut(s) | 60, 162 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 204 |
| PkrI | GCNGC | 5 cut(s) | 11, 235, 244, 247, 333 |
| PspN4I | GGNNCC | 1 cut(s) | 395 |
| PspPI | GGNCC | 2 cut(s) | 394, 598 |
| PspXI | VCTCGAGB | 1 cut(s) | 18 |
| PsuI | RGATCY | 2 cut(s) | 490, 591 |
| RseI | CAYNNNNRTG | 1 cut(s) | 630 |
| Rsr2I | CGGWCCG | 1 cut(s) | 598 |
| RsrII | CGGWCCG | 1 cut(s) | 598 |
| SaqAI | TTAA | 1 cut(s) | 399 |
| SatI | GCNGC | 5 cut(s) | 10, 234, 243, 246, 332 |
| Sau3AI | GATC | 3 cut(s) | 321, 490, 591 |
| Sau96I | GGNCC | 2 cut(s) | 394, 598 |
| SduI | GDGCHC | 1 cut(s) | 544 |
| SfaNI | GCATC | 3 cut(s) | 109, 409, 622 |
| SfcI | CTRYAG | 1 cut(s) | 388 |
| Sfr274I | CTCGAG | 1 cut(s) | 18 |
| SinI | GGWCC | 1 cut(s) | 598 |
| SlaI | CTCGAG | 1 cut(s) | 18 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 630 |
| SmlI | CTYRAG | 1 cut(s) | 18 |
| SmoI | CTYRAG | 1 cut(s) | 18 |
| Sse9I | AATT | 2 cut(s) | 192, 200 |
| SsiI | CCGC | 5 cut(s) | 233, 236, 242, 245, 331 |
| SspMI | CTAG | 3 cut(s) | 249, 453, 569 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TaaI | ACNGT | 3 cut(s) | 170, 389, 505 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 4 cut(s) | 19, 165, 261, 439 |
| TaqII | GACCGA | 1 cut(s) | 586 |
| TasI | AATT | 2 cut(s) | 192, 200 |
| TauI | GCSGC | 4 cut(s) | 236, 245, 248, 334 |
| TfiI | GAWTC | 2 cut(s) | 60, 162 |
| Tru1I | TTAA | 1 cut(s) | 399 |
| Tru9I | TTAA | 1 cut(s) | 399 |
| TscAI | CASTG | 2 cut(s) | 234, 279 |
| TseI | GCWGC | 1 cut(s) | 9 |
| TspGWI | ACGGA | 2 cut(s) | 528, 590 |
| TspRI | CASTG | 2 cut(s) | 234, 279 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 204 |
| VpaK11BI | GGWCC | 1 cut(s) | 598 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XhoI | CTCGAG | 1 cut(s) | 18 |
| XmnI | GAANNNNTTC | 1 cut(s) | 613 |
| XspI | CTAG | 3 cut(s) | 249, 453, 569 |