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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 166 |
| AccII | CGCG | 6 cut(s) | 36, 61, 139, 177, 422, 481 |
| AciI | CCGC | 6 cut(s) | 34, 36, 152, 314, 328, 409 |
| AclWI | GGATC | 2 cut(s) | 215, 315 |
| AcoI | YGGCCR | 1 cut(s) | 442 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 166, 265 |
| AjnI | CCWGG | 1 cut(s) | 165 |
| AluBI | AGCT | 3 cut(s) | 143, 390, 438 |
| AluI | AGCT | 3 cut(s) | 143, 390, 438 |
| Alw21I | GWGCWC | 2 cut(s) | 137, 238 |
| AlwI | GGATC | 2 cut(s) | 215, 315 |
| Ama87I | CYCGRG | 3 cut(s) | 81, 101, 211 |
| AoxI | GGCC | 7 cut(s) | 113, 163, 267, 366, 380, 442, 498 |
| AseI | ATTAAT | 1 cut(s) | 198 |
| AspLEI | GCGC | 4 cut(s) | 63, 108, 177, 422 |
| AspS9I | GGNCC | 5 cut(s) | 113, 157, 366, 411, 498 |
| AsuC2I | CCSGG | 2 cut(s) | 117, 370 |
| AvaI | CYCGRG | 3 cut(s) | 81, 101, 211 |
| AvaII | GGWCC | 2 cut(s) | 157, 411 |
| BauI | CACGAG | 1 cut(s) | 343 |
| BbsI | GAAGAC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 2 cut(s) | 137, 238 |
| BccI | CCATC | 2 cut(s) | 332, 489 |
| BceAI | ACGGC | 2 cut(s) | 243, 429 |
| BciT130I | CCWGG | 1 cut(s) | 167 |
| BcnI | CCSGG | 2 cut(s) | 117, 370 |
| BfaI | CTAG | 1 cut(s) | 311 |
| Bme1390I | CCNGG | 3 cut(s) | 117, 167, 370 |
| Bme18I | GGWCC | 2 cut(s) | 157, 411 |
| BmeT110I | CYCGRG | 3 cut(s) | 81, 101, 211 |
| BmgT120I | GGNCC | 5 cut(s) | 113, 157, 366, 411, 498 |
| BmiI | GGNNCC | 2 cut(s) | 114, 466 |
| BmrFI | CCNGG | 3 cut(s) | 117, 167, 370 |
| BmsI | GCATC | 1 cut(s) | 414 |
| BpiI | GAAGAC | 1 cut(s) | 60 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 449, 481 |
| BpuMI | CCSGG | 2 cut(s) | 117, 370 |
| BsaJI | CCNNGG | 7 cut(s) | 15, 34, 116, 160, 270, 377, 451 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 166, 265 |
| Bse118I | RCCGGY | 1 cut(s) | 500 |
| BseBI | CCWGG | 1 cut(s) | 167 |
| BseDI | CCNNGG | 7 cut(s) | 15, 34, 116, 160, 270, 377, 451 |
| BseGI | GGATG | 2 cut(s) | 343, 500 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 166, 265 |
| BseRI | GAGGAG | 3 cut(s) | 202, 229, 263 |
| BseX3I | CGGCCG | 1 cut(s) | 442 |
| Bsh1236I | CGCG | 6 cut(s) | 36, 61, 139, 177, 422, 481 |
| Bsh1285I | CGRYCG | 2 cut(s) | 445, 479 |
| BshFI | GGCC | 7 cut(s) | 115, 165, 269, 368, 382, 444, 500 |
| BsiEI | CGRYCG | 2 cut(s) | 445, 479 |
| BsiHKAI | GWGCWC | 2 cut(s) | 137, 238 |
| BsiHKCI | CYCGRG | 3 cut(s) | 81, 101, 211 |
| BsiSI | CCGG | 3 cut(s) | 116, 369, 501 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 166, 265 |
| BsnI | GGCC | 7 cut(s) | 115, 165, 269, 368, 382, 444, 500 |
| BsoBI | CYCGRG | 3 cut(s) | 81, 101, 211 |
| Bsp1286I | GDGCHC | 2 cut(s) | 137, 238 |
| Bsp143I | GATC | 3 cut(s) | 207, 307, 476 |
| Bsp68I | TCGCGA | 1 cut(s) | 139 |
| BspACI | CCGC | 6 cut(s) | 34, 36, 152, 314, 328, 409 |
| BspANI | GGCC | 7 cut(s) | 115, 165, 269, 368, 382, 444, 500 |
| BspFNI | CGCG | 6 cut(s) | 36, 61, 139, 177, 422, 481 |
| BspLI | GGNNCC | 2 cut(s) | 114, 466 |
| BspPI | GGATC | 2 cut(s) | 215, 315 |
| BspQI | GCTCTTC | 1 cut(s) | 380 |
| BsrFI | RCCGGY | 1 cut(s) | 500 |
| BssAI | RCCGGY | 1 cut(s) | 500 |
| BssECI | CCNNGG | 7 cut(s) | 15, 34, 116, 160, 270, 377, 451 |
| BssMI | GATC | 3 cut(s) | 207, 307, 476 |
| BssSI | CACGAG | 1 cut(s) | 343 |
| BssT1I | CCWWGG | 3 cut(s) | 160, 377, 451 |
| Bst2BI | CACGAG | 1 cut(s) | 343 |
| Bst2UI | CCWGG | 1 cut(s) | 167 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 1 cut(s) | 380 |
| BstC8I | GCNNGC | 5 cut(s) | 133, 137, 141, 256, 330 |
| BstDEI | CTNAG | 1 cut(s) | 290 |
| BstDSI | CCRYGG | 2 cut(s) | 15, 34 |
| BstF5I | GGATG | 2 cut(s) | 343, 500 |
| BstFNI | CGCG | 6 cut(s) | 36, 61, 139, 177, 422, 481 |
| BstHHI | GCGC | 4 cut(s) | 63, 108, 177, 422 |
| BstKTI | GATC | 3 cut(s) | 210, 310, 479 |
| BstMBI | GATC | 3 cut(s) | 207, 307, 476 |
| BstMCI | CGRYCG | 2 cut(s) | 445, 479 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 112, 149, 275 |
| BstNI | CCWGG | 1 cut(s) | 167 |
| BstSCI | CCNGG | 3 cut(s) | 115, 165, 368 |
| BstUI | CGCG | 6 cut(s) | 36, 61, 139, 177, 422, 481 |
| BstV2I | GAAGAC | 1 cut(s) | 60 |
| BstX2I | RGATCY | 2 cut(s) | 207, 307 |
| BstYI | RGATCY | 2 cut(s) | 207, 307 |
| BstZI | CGGCCG | 1 cut(s) | 442 |
| BsuRI | GGCC | 7 cut(s) | 115, 165, 269, 368, 382, 444, 500 |
| BtgI | CCRYGG | 2 cut(s) | 15, 34 |
| BtgZI | GCGATG | 1 cut(s) | 437 |
| BtsCI | GGATG | 2 cut(s) | 343, 500 |
| BtuMI | TCGCGA | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 5 cut(s) | 133, 137, 141, 256, 330 |
| CfoI | GCGC | 4 cut(s) | 63, 108, 177, 422 |
| Cfr10I | RCCGGY | 1 cut(s) | 500 |
| Cfr13I | GGNCC | 5 cut(s) | 113, 157, 366, 411, 498 |
| Cfr42I | CCGCGG | 1 cut(s) | 37 |
| CpoI | CGGWCCG | 1 cut(s) | 411 |
| CspI | CGGWCCG | 1 cut(s) | 411 |
| DdeI | CTNAG | 1 cut(s) | 290 |
| DpnI | GATC | 3 cut(s) | 209, 309, 478 |
| DpnII | GATC | 3 cut(s) | 207, 307, 476 |
| EaeI | YGGCCR | 1 cut(s) | 442 |
| EagI | CGGCCG | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 1 cut(s) | 380 |
| EclXI | CGGCCG | 1 cut(s) | 442 |
| Eco130I | CCWWGG | 3 cut(s) | 160, 377, 451 |
| Eco147I | AGGCCT | 1 cut(s) | 165 |
| Eco47I | GGWCC | 2 cut(s) | 157, 411 |
| Eco52I | CGGCCG | 1 cut(s) | 442 |
| Eco88I | CYCGRG | 3 cut(s) | 81, 101, 211 |
| EcoRII | CCWGG | 1 cut(s) | 165 |
| EcoT14I | CCWWGG | 3 cut(s) | 160, 377, 451 |
| ErhI | CCWWGG | 3 cut(s) | 160, 377, 451 |
| FaiI | YATR | 2 cut(s) | 185, 245 |
| FauI | CCCGC | 2 cut(s) | 307, 321 |
| FokI | GGATG | 1 cut(s) | 350 |
| FspBI | CTAG | 1 cut(s) | 311 |
| GlaI | GCGC | 4 cut(s) | 62, 107, 176, 421 |
| HaeIII | GGCC | 7 cut(s) | 115, 165, 269, 368, 382, 444, 500 |
| HapII | CCGG | 3 cut(s) | 116, 369, 501 |
| HhaI | GCGC | 4 cut(s) | 63, 108, 177, 422 |
| Hin6I | GCGC | 4 cut(s) | 61, 106, 175, 420 |
| HinP1I | GCGC | 4 cut(s) | 61, 106, 175, 420 |
| HinfI | GANTC | 1 cut(s) | 56 |
| HpaII | CCGG | 3 cut(s) | 116, 369, 501 |
| Hpy166II | GTNNAC | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 1 cut(s) | 415 |
| Hpy188III | TCNNGA | 7 cut(s) | 29, 74, 83, 138, 211, 263, 474 |
| Hpy8I | GTNNAC | 1 cut(s) | 157 |
| Hpy99I | CGWCG | 1 cut(s) | 264 |
| HpyAV | CCTTC | 3 cut(s) | 197, 312, 328 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 112, 149, 275 |
| HpyF3I | CTNAG | 1 cut(s) | 290 |
| HspAI | GCGC | 4 cut(s) | 61, 106, 175, 420 |
| KspI | CCGCGG | 1 cut(s) | 37 |
| Kzo9I | GATC | 3 cut(s) | 207, 307, 476 |
| LguI | GCTCTTC | 1 cut(s) | 380 |
| LmnI | GCTCC | 5 cut(s) | 128, 172, 355, 435, 470 |
| LpnPI | CCDG | 5 cut(s) | 94, 129, 152, 179, 382 |
| LweI | GCATC | 1 cut(s) | 414 |
| MaeI | CTAG | 1 cut(s) | 311 |
| MaeIII | GTNAC | 2 cut(s) | 4, 29 |
| MalI | GATC | 3 cut(s) | 209, 309, 478 |
| MboI | GATC | 3 cut(s) | 207, 307, 476 |
| MboII | GAAGA | 2 cut(s) | 65, 397 |
| MflI | RGATCY | 2 cut(s) | 207, 307 |
| MhlI | GDGCHC | 2 cut(s) | 137, 238 |
| MluCI | AATT | 1 cut(s) | 195 |
| MlyI | GAGTC | 1 cut(s) | 50 |
| MmeI | TCCRAC | 2 cut(s) | 207, 413 |
| MseI | TTAA | 2 cut(s) | 198, 392 |
| MspA1I | CMGCKG | 1 cut(s) | 36 |
| MspI | CCGG | 3 cut(s) | 116, 369, 501 |
| MspR9I | CCNGG | 3 cut(s) | 117, 167, 370 |
| MvaI | CCWGG | 1 cut(s) | 167 |
| MvnI | CGCG | 6 cut(s) | 36, 61, 139, 177, 422, 481 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 112, 149, 275 |
| NciI | CCSGG | 2 cut(s) | 117, 370 |
| NdeII | GATC | 3 cut(s) | 207, 307, 476 |
| NlaIV | GGNNCC | 2 cut(s) | 114, 466 |
| NmeAIII | GCCGAG | 2 cut(s) | 295, 453 |
| NmuCI | GTSAC | 1 cut(s) | 29 |
| NruI | TCGCGA | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 211 |
| PceI | AGGCCT | 1 cut(s) | 165 |
| PciSI | GCTCTTC | 1 cut(s) | 380 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 143 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 166 |
| Ple19I | CGATCG | 1 cut(s) | 479 |
| PleI | GAGTC | 1 cut(s) | 50 |
| PpsI | GAGTC | 1 cut(s) | 50 |
| PshBI | ATTAAT | 1 cut(s) | 198 |
| Psp6I | CCWGG | 1 cut(s) | 165 |
| PspGI | CCWGG | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 2 cut(s) | 114, 466 |
| PspPI | GGNCC | 5 cut(s) | 113, 157, 366, 411, 498 |
| PsuI | RGATCY | 2 cut(s) | 207, 307 |
| PvuI | CGATCG | 1 cut(s) | 479 |
| RruI | TCGCGA | 1 cut(s) | 139 |
| Rsr2I | CGGWCCG | 1 cut(s) | 411 |
| RsrII | CGGWCCG | 1 cut(s) | 411 |
| SacII | CCGCGG | 1 cut(s) | 37 |
| SapI | GCTCTTC | 1 cut(s) | 380 |
| SaqAI | TTAA | 2 cut(s) | 198, 392 |
| Sau3AI | GATC | 3 cut(s) | 207, 307, 476 |
| Sau96I | GGNCC | 5 cut(s) | 113, 157, 366, 411, 498 |
| SchI | GAGTC | 1 cut(s) | 50 |
| ScrFI | CCNGG | 3 cut(s) | 117, 167, 370 |
| SduI | GDGCHC | 2 cut(s) | 137, 238 |
| SetI | ASST | 5 cut(s) | 92, 145, 350, 392, 440 |
| SfaNI | GCATC | 1 cut(s) | 414 |
| Sfr274I | CTCGAG | 1 cut(s) | 211 |
| Sfr303I | CCGCGG | 1 cut(s) | 37 |
| SgrBI | CCGCGG | 1 cut(s) | 37 |
| SinI | GGWCC | 2 cut(s) | 157, 411 |
| SlaI | CTCGAG | 1 cut(s) | 211 |
| SmlI | CTYRAG | 1 cut(s) | 211 |
| SmoI | CTYRAG | 1 cut(s) | 211 |
| Sse9I | AATT | 1 cut(s) | 195 |
| SseBI | AGGCCT | 1 cut(s) | 165 |
| SsiI | CCGC | 6 cut(s) | 34, 36, 152, 314, 328, 409 |
| SspMI | CTAG | 1 cut(s) | 311 |
| StuI | AGGCCT | 1 cut(s) | 165 |
| StyD4I | CCNGG | 3 cut(s) | 115, 165, 368 |
| StyI | CCWWGG | 3 cut(s) | 160, 377, 451 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 4 cut(s) | 73, 146, 212, 262 |
| TasI | AATT | 1 cut(s) | 195 |
| Tru1I | TTAA | 2 cut(s) | 198, 392 |
| Tru9I | TTAA | 2 cut(s) | 198, 392 |
| TseFI | GTSAC | 1 cut(s) | 29 |
| Tsp45I | GTSAC | 1 cut(s) | 29 |
| TspDTI | ATGAA | 1 cut(s) | 216 |
| TspGWI | ACGGA | 2 cut(s) | 23, 320 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 166 |
| VpaK11BI | GGWCC | 2 cut(s) | 157, 411 |
| VspI | ATTAAT | 1 cut(s) | 198 |
| XhoI | CTCGAG | 1 cut(s) | 211 |
| XspI | CTAG | 1 cut(s) | 311 |