Rroxscaffold_2G00116270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000075
Physical Location & Seq
Forward (+)
43372725 .. 43373561
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116270.1

Sequence Viewer

Length: 756 bp
ATGGAGGTGGGTGAAGCGGGTGAGCGCCTTCAAGTGTGCATGTTGGGAGCGTCGGTCCCCGAGACTCGGGGAAATGGTGAGACAATCCCCCCGGTTGTCGGAAGAGGTGGAGCGGCATCAAAGCGATCCCGCACCCATGCTAGGTCGGTGCAAGACGCGGTGTTGGAACAGCTAGATGCCATCTTTGGCGAGGACGTTGGTGTTCCAATCTCGCGGGAGGTCATCACCGTTGATAGTGGGGAGGCAAAGGTGACCAGCCAGGCCGTTGGAGAGACAGGTTCGATGACCAAAGCTCTGGGGTGCAACATGAGTTTGGAGAGTGCGTGGTTAGGGTTGCCCAAAGTGACCAAGATGGGGACCCGTGGACGGGATGGTGCGGGGAATGGAATCCGAGTGTCGGACACGTGCGCTCGTACGGATGGGGTCCTCGGGTCAAAGAAAAGAACTACCTCGCAGCTGCGTCTCGGGAGTCCCCCGGTGGGTGTCGTCATCGATACTCGTGGTAGCAAGAGGCCTCGGGTTAATAATGCATCGCACTCGAGATCTACAAGTGGGGCTCACGAGGTTCTTCCGATGAGGTTGCGGGGGTCTCGCGCACACCCCGGGCGAGATTGGAATTGCGATGGCGTCATTCTTCATATAGTTGCTGCGGCGGAACTGTCACCGAGGGTCTCCGGCGGAAGCGTCATTGCGACCGCATCGCGTGAATGCCAAAAATCCTCGCACGAGGTATCGGGAGGCGCGGGGAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

26.0

Weight (kDa)

9.66

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AccII CGCG 5 cut(s) 158, 214, 594, 703, 743
AclWI GGATC 1 cut(s) 120
AcvI CACGTG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 8 cut(s) 66, 98, 141, 354, 366, 367, 397, 479
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 3 cut(s) 172, 293, 457
AluI AGCT 3 cut(s) 172, 293, 457
Alw26I GTCTC 6 cut(s) 56, 74, 266, 467, 594, 676
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 7 cut(s) 59, 66, 428, 464, 516, 538, 602
AoxI GGCC 2 cut(s) 261, 512
ApeKI GCWGC 3 cut(s) 454, 457, 647
AspLEI GCGC 4 cut(s) 27, 410, 596, 743
AspS9I GGNCC 3 cut(s) 55, 357, 424
AsuC2I CCSGG 4 cut(s) 92, 476, 603, 604
AsuHPI GGTGA 6 cut(s) 23, 32, 89, 217, 262, 654
AvaI CYCGRG 7 cut(s) 59, 66, 428, 464, 516, 538, 602
AvaII GGWCC 3 cut(s) 55, 357, 424
BanII GRGCYC 1 cut(s) 559
BauI CACGAG 3 cut(s) 498, 560, 725
BbrPI CACGTG 1 cut(s) 405
BbvI GCAGC 3 cut(s) 444, 466, 634
BccI CCATC 5 cut(s) 188, 346, 365, 413, 617
BceAI ACGGC 1 cut(s) 248
BcgI CGANNNNNNTGC 4 cut(s) 519, 553, 562, 596
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 4 cut(s) 92, 476, 603, 604
BcoDI GTCTC 6 cut(s) 56, 74, 266, 467, 594, 676
BfaI CTAG 2 cut(s) 141, 173
BfoI RGCGCY 1 cut(s) 28
BglII AGATCT 1 cut(s) 542
BisI GCNGC 5 cut(s) 114, 455, 458, 648, 651
BlsI GCNGC 5 cut(s) 115, 456, 459, 649, 652
Bme1390I CCNGG 5 cut(s) 92, 260, 476, 603, 604
Bme18I GGWCC 3 cut(s) 55, 357, 424
BmeT110I CYCGRG 7 cut(s) 59, 66, 428, 464, 516, 538, 602
BmgT120I GGNCC 3 cut(s) 55, 357, 424
BmiI GGNNCC 4 cut(s) 57, 358, 359, 425
BmrFI CCNGG 5 cut(s) 92, 260, 476, 603, 604
BmsI GCATC 4 cut(s) 125, 166, 539, 707
BpuMI CCSGG 4 cut(s) 92, 476, 603, 604
Bsa29I ATCGAT 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 627
BsaI GGTCTC 2 cut(s) 594, 676
BsaJI CCNNGG 8 cut(s) 90, 361, 427, 474, 515, 601, 602, 665
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 308, 338
Bsc4I CCNNNNNNNGG 8 cut(s) 66, 98, 141, 354, 366, 367, 397, 479
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 8 cut(s) 90, 361, 427, 474, 515, 601, 602, 665
BseGI GGATG 2 cut(s) 376, 424
BseLI CCNNNNNNNGG 8 cut(s) 66, 98, 141, 354, 366, 367, 397, 479
BseMI GCAATG 1 cut(s) 687
BseXI GCAGC 3 cut(s) 444, 466, 634
Bsh1236I CGCG 5 cut(s) 158, 214, 594, 703, 743
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 2 cut(s) 263, 514
BshVI ATCGAT 1 cut(s) 492
BsiEI CGRYCG 1 cut(s) 696
BsiHKCI CYCGRG 7 cut(s) 59, 66, 428, 464, 516, 538, 602
BsiSI CCGG 4 cut(s) 92, 476, 603, 675
BsiWI CGTACG 1 cut(s) 413
BslFI GGGAC 3 cut(s) 41, 370, 456
BslI CCNNNNNNNGG 8 cut(s) 66, 98, 141, 354, 366, 367, 397, 479
BsmAI GTCTC 6 cut(s) 56, 74, 266, 467, 594, 676
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 3 cut(s) 41, 370, 456
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 2 cut(s) 263, 514
Bso31I GGTCTC 2 cut(s) 594, 676
BsoBI CYCGRG 7 cut(s) 59, 66, 428, 464, 516, 538, 602
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 2 cut(s) 125, 542
BspANI GGCC 2 cut(s) 263, 514
BspDI ATCGAT 1 cut(s) 492
BspFNI CGCG 5 cut(s) 158, 214, 594, 703, 743
BspLI GGNNCC 4 cut(s) 57, 358, 359, 425
BspPI GGATC 1 cut(s) 120
BspTNI GGTCTC 2 cut(s) 594, 676
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 687
BssECI CCNNGG 8 cut(s) 90, 361, 427, 474, 515, 601, 602, 665
BssMI GATC 2 cut(s) 125, 542
BssNI GRCGYC 1 cut(s) 627
BssSI CACGAG 3 cut(s) 498, 560, 725
Bst2BI CACGAG 3 cut(s) 498, 560, 725
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 229, 660
Bst6I CTCTTC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 361
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 2 cut(s) 376, 424
BstFNI CGCG 5 cut(s) 158, 214, 594, 703, 743
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 4 cut(s) 27, 410, 596, 743
BstKTI GATC 2 cut(s) 128, 545
BstMAI GTCTC 6 cut(s) 56, 74, 266, 467, 594, 676
BstMBI GATC 2 cut(s) 125, 542
BstMCI CGRYCG 1 cut(s) 696
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 43
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 5 cut(s) 90, 258, 474, 601, 602
BstUI CGCG 5 cut(s) 158, 214, 594, 703, 743
BstV1I GCAGC 3 cut(s) 444, 466, 634
BstX2I RGATCY 1 cut(s) 542
BstXI CCANNNNNNTGG 2 cut(s) 266, 295
BstYI RGATCY 1 cut(s) 542
Bsu15I ATCGAT 1 cut(s) 492
BsuRI GGCC 2 cut(s) 263, 514
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 361
BtgZI GCGATG 3 cut(s) 516, 636, 684
BtsCI GGATG 2 cut(s) 376, 424
CfoI GCGC 4 cut(s) 27, 410, 596, 743
Cfr13I GGNCC 3 cut(s) 55, 357, 424
Cfr9I CCCGGG 1 cut(s) 602
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 5 cut(s) 39, 164, 449, 616, 673
Csp6I GTAC 1 cut(s) 414
CviAII CATG 3 cut(s) 40, 137, 307
CviJI RGCY 7 cut(s) 172, 258, 263, 293, 457, 514, 557
CviKI_1 RGCY 7 cut(s) 172, 258, 263, 293, 457, 514, 557
CviQI GTAC 1 cut(s) 414
DpnI GATC 2 cut(s) 127, 544
DpnII GATC 2 cut(s) 125, 542
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 2 cut(s) 668, 693
Eco147I AGGCCT 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 2 cut(s) 594, 676
Eco47I GGWCC 3 cut(s) 55, 357, 424
Eco72I CACGTG 1 cut(s) 405
Eco88I CYCGRG 7 cut(s) 59, 66, 428, 464, 516, 538, 602
Eco91I GGTNACC 1 cut(s) 250
EcoO109I RGGNCCY 2 cut(s) 357, 424
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 3 cut(s) 43, 140, 310
FaiI YATR 5 cut(s) 41, 138, 308, 639, 641
FaqI GGGAC 3 cut(s) 41, 370, 456
FatI CATG 3 cut(s) 39, 136, 306
FauI CCCGC 6 cut(s) 10, 137, 207, 370, 576, 736
Fnu4HI GCNGC 5 cut(s) 114, 455, 458, 648, 651
FokI GGATG 2 cut(s) 383, 431
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 5 cut(s) 114, 455, 458, 648, 651
FspBI CTAG 2 cut(s) 141, 173
GlaI GCGC 4 cut(s) 26, 409, 595, 742
GluI GCNGC 5 cut(s) 114, 455, 458, 648, 651
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 263, 514
HapII CCGG 4 cut(s) 92, 476, 603, 675
HgaI GACGC 5 cut(s) 39, 164, 449, 616, 673
HhaI GCGC 4 cut(s) 27, 410, 596, 743
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 3 cut(s) 43, 140, 310
Hin6I GCGC 4 cut(s) 25, 408, 594, 741
HinP1I GCGC 4 cut(s) 25, 408, 594, 741
HinfI GANTC 3 cut(s) 64, 387, 469
HpaII CCGG 4 cut(s) 92, 476, 603, 675
HphI GGTGA 6 cut(s) 23, 32, 89, 217, 262, 654
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 4 cut(s) 101, 392, 400, 573
Hpy188III TCNNGA 4 cut(s) 466, 540, 560, 735
Hpy8I GTNNAC 1 cut(s) 365
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 229, 660
HpyCH4IV ACGT 2 cut(s) 195, 404
HpyCH4V TGCA 4 cut(s) 39, 151, 303, 530
HpySE526I ACGT 2 cut(s) 195, 404
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 3 cut(s) 43, 140, 310
HspAI GCGC 4 cut(s) 25, 408, 594, 741
KflI GGGWCCC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 125, 542
LmnI GCTCC 2 cut(s) 47, 110
LpnPI CCDG 9 cut(s) 105, 245, 261, 268, 272, 281, 489, 616, 688
Lsp1109I GCAGC 3 cut(s) 444, 466, 634
LweI GCATC 4 cut(s) 125, 166, 539, 707
MaeI CTAG 2 cut(s) 141, 173
MaeII ACGT 2 cut(s) 195, 404
MaeIII GTNAC 3 cut(s) 250, 343, 660
MalI GATC 2 cut(s) 127, 544
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 125, 542
MboII GAAGA 3 cut(s) 114, 560, 626
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 1 cut(s) 616
MlyI GAGTC 2 cut(s) 58, 478
MmeI TCCRAC 4 cut(s) 79, 144, 247, 378
Mph1103I ATGCAT 1 cut(s) 532
MseI TTAA 2 cut(s) 522, 754
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 4 cut(s) 92, 476, 603, 675
MspR9I CCNGG 5 cut(s) 92, 260, 476, 603, 604
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 5 cut(s) 158, 214, 594, 703, 743
NciI CCSGG 4 cut(s) 92, 476, 603, 604
NdeII GATC 2 cut(s) 125, 542
NlaIII CATG 3 cut(s) 43, 140, 310
NlaIV GGNNCC 4 cut(s) 57, 358, 359, 425
NmuCI GTSAC 3 cut(s) 250, 343, 660
NsiI ATGCAT 1 cut(s) 532
NspI RCATGY 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 538
PceI AGGCCT 1 cut(s) 514
PctI GAATGC 1 cut(s) 713
PfeI GAWTC 1 cut(s) 387
Pfl23II CGTACG 1 cut(s) 413
PkrI GCNGC 5 cut(s) 115, 456, 459, 649, 652
PleI GAGTC 2 cut(s) 58, 477
PmaCI CACGTG 1 cut(s) 405
PmlI CACGTG 1 cut(s) 405
PpsI GAGTC 2 cut(s) 58, 477
Ppu21I YACGTR 1 cut(s) 405
PpuMI RGGWCCY 2 cut(s) 357, 424
Psp5II RGGWCCY 2 cut(s) 357, 424
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 405
PspEI GGTNACC 1 cut(s) 250
PspGI CCWGG 1 cut(s) 258
PspLI CGTACG 1 cut(s) 413
PspN4I GGNNCC 4 cut(s) 57, 358, 359, 425
PspPI GGNCC 3 cut(s) 55, 357, 424
PspPPI RGGWCCY 2 cut(s) 357, 424
PsuI RGATCY 1 cut(s) 542
PvuII CAGCTG 1 cut(s) 457
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 522, 754
SatI GCNGC 5 cut(s) 114, 455, 458, 648, 651
Sau3AI GATC 2 cut(s) 125, 542
Sau96I GGNCC 3 cut(s) 55, 357, 424
SchI GAGTC 2 cut(s) 58, 478
ScrFI CCNGG 5 cut(s) 92, 260, 476, 603, 604
SduI GDGCHC 1 cut(s) 559
SfaNI GCATC 4 cut(s) 125, 166, 539, 707
Sfr274I CTCGAG 1 cut(s) 538
SinI GGWCC 3 cut(s) 55, 357, 424
SlaI CTCGAG 1 cut(s) 538
SmaI CCCGGG 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 1 cut(s) 616
SseBI AGGCCT 1 cut(s) 514
SspMI CTAG 2 cut(s) 141, 173
StuI AGGCCT 1 cut(s) 514
StyD4I CCNGG 5 cut(s) 90, 258, 474, 601, 602
TaaI ACNGT 2 cut(s) 229, 660
TaiI ACGT 2 cut(s) 198, 407
TaqI TCGA 3 cut(s) 281, 492, 539
TaqII GACCGA 1 cut(s) 43
TasI AATT 1 cut(s) 616
TauI GCSGC 2 cut(s) 116, 653
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 522, 754
Tru9I TTAA 2 cut(s) 522, 754
TseFI GTSAC 3 cut(s) 250, 343, 660
TseI GCWGC 3 cut(s) 454, 457, 647
Tsp45I GTSAC 3 cut(s) 250, 343, 660
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 1 cut(s) 431
TspMI CCCGGG 1 cut(s) 602
VpaK11BI GGWCC 3 cut(s) 55, 357, 424
XceI RCATGY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 538
XmaI CCCGGG 1 cut(s) 602
XspI CTAG 2 cut(s) 141, 173
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.