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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 55 |
| AccII | CGCG | 3 cut(s) | 22, 561, 584 |
| AciI | CCGC | 2 cut(s) | 84, 584 |
| AclWI | GGATC | 5 cut(s) | 118, 300, 350, 450, 498 |
| AcoI | YGGCCR | 1 cut(s) | 195 |
| AcuI | CTGAAG | 3 cut(s) | 140, 500, 540 |
| AfaI | GTAC | 2 cut(s) | 140, 378 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 69, 83, 133, 193, 484 |
| AjnI | CCWGG | 5 cut(s) | 10, 29, 132, 300, 552 |
| AluBI | AGCT | 3 cut(s) | 247, 277, 577 |
| AluI | AGCT | 3 cut(s) | 247, 277, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 1 cut(s) | 22 |
| AlwI | GGATC | 5 cut(s) | 118, 300, 350, 450, 498 |
| AoxI | GGCC | 4 cut(s) | 195, 298, 402, 475 |
| ApeKI | GCWGC | 2 cut(s) | 277, 587 |
| AspLEI | GCGC | 2 cut(s) | 24, 528 |
| AsuC2I | CCSGG | 1 cut(s) | 143 |
| AsuHPI | GGTGA | 1 cut(s) | 478 |
| BanI | GGYRCC | 1 cut(s) | 55 |
| BanII | GRGCYC | 2 cut(s) | 391, 435 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BbvI | GCAGC | 2 cut(s) | 264, 574 |
| BccI | CCATC | 3 cut(s) | 67, 349, 467 |
| BciT130I | CCWGG | 5 cut(s) | 12, 31, 134, 302, 554 |
| BcnI | CCSGG | 1 cut(s) | 143 |
| BcoDI | GTCTC | 1 cut(s) | 22 |
| BfmI | CTRYAG | 2 cut(s) | 236, 278 |
| BfoI | RGCGCY | 1 cut(s) | 529 |
| BisI | GCNGC | 3 cut(s) | 278, 585, 588 |
| BlsI | GCNGC | 3 cut(s) | 279, 586, 589 |
| Bme1390I | CCNGG | 6 cut(s) | 12, 31, 134, 143, 302, 554 |
| BmiI | GGNNCC | 2 cut(s) | 57, 432 |
| BmrFI | CCNGG | 6 cut(s) | 12, 31, 134, 143, 302, 554 |
| BmsI | GCATC | 1 cut(s) | 553 |
| BpmI | CTGGAG | 2 cut(s) | 155, 401 |
| Bpu10I | CCTNAGC | 1 cut(s) | 150 |
| BpuMI | CCSGG | 1 cut(s) | 143 |
| BsaI | GGTCTC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 6 cut(s) | 11, 29, 30, 192, 405, 438 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 69, 83, 133, 193, 484 |
| Bse1I | ACTGG | 1 cut(s) | 384 |
| BseBI | CCWGG | 5 cut(s) | 12, 31, 134, 302, 554 |
| BseDI | CCNNGG | 6 cut(s) | 11, 29, 30, 192, 405, 438 |
| BseGI | GGATG | 3 cut(s) | 59, 360, 478 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 69, 83, 133, 193, 484 |
| BseMII | CTCAG | 3 cut(s) | 164, 416, 558 |
| BseNI | ACTGG | 1 cut(s) | 384 |
| BseX3I | CGGCCG | 1 cut(s) | 195 |
| BseXI | GCAGC | 2 cut(s) | 264, 574 |
| Bsh1236I | CGCG | 3 cut(s) | 22, 561, 584 |
| Bsh1285I | CGRYCG | 1 cut(s) | 198 |
| BshFI | GGCC | 4 cut(s) | 197, 300, 404, 477 |
| BshNI | GGYRCC | 1 cut(s) | 55 |
| BsiEI | CGRYCG | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsiSI | CCGG | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 69, 83, 133, 193, 484 |
| BsmAI | GTCTC | 1 cut(s) | 22 |
| BsmI | GAATGC | 1 cut(s) | 120 |
| BsnI | GGCC | 4 cut(s) | 197, 300, 404, 477 |
| Bso31I | GGTCTC | 1 cut(s) | 22 |
| Bsp1286I | GDGCHC | 3 cut(s) | 271, 391, 435 |
| Bsp143I | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| BspACI | CCGC | 2 cut(s) | 84, 584 |
| BspANI | GGCC | 4 cut(s) | 197, 300, 404, 477 |
| BspCNI | CTCAG | 3 cut(s) | 163, 417, 559 |
| BspFNI | CGCG | 3 cut(s) | 22, 561, 584 |
| BspLI | GGNNCC | 2 cut(s) | 57, 432 |
| BspMAI | CTGCAG | 1 cut(s) | 282 |
| BspPI | GGATC | 5 cut(s) | 118, 300, 350, 450, 498 |
| BspQI | GCTCTTC | 1 cut(s) | 516 |
| BspT107I | GGYRCC | 1 cut(s) | 55 |
| BspTNI | GGTCTC | 1 cut(s) | 22 |
| BsrI | ACTGG | 1 cut(s) | 384 |
| BssECI | CCNNGG | 6 cut(s) | 11, 29, 30, 192, 405, 438 |
| BssMI | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| BssT1I | CCWWGG | 1 cut(s) | 438 |
| Bst2UI | CCWGG | 5 cut(s) | 12, 31, 134, 302, 554 |
| Bst6I | CTCTTC | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 4 cut(s) | 267, 271, 275, 530 |
| BstDEI | CTNAG | 3 cut(s) | 150, 425, 567 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 482 |
| BstF5I | GGATG | 3 cut(s) | 59, 360, 478 |
| BstFNI | CGCG | 3 cut(s) | 22, 561, 584 |
| BstH2I | RGCGCY | 1 cut(s) | 529 |
| BstHHI | GCGC | 2 cut(s) | 24, 528 |
| BstKTI | GATC | 6 cut(s) | 126, 295, 345, 371, 445, 493 |
| BstMAI | GTCTC | 1 cut(s) | 22 |
| BstMBI | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| BstMCI | CGRYCG | 1 cut(s) | 198 |
| BstNI | CCWGG | 5 cut(s) | 12, 31, 134, 302, 554 |
| BstSCI | CCNGG | 6 cut(s) | 10, 29, 132, 141, 300, 552 |
| BstSFI | CTRYAG | 2 cut(s) | 236, 278 |
| BstUI | CGCG | 3 cut(s) | 22, 561, 584 |
| BstV1I | GCAGC | 2 cut(s) | 264, 574 |
| BstX2I | RGATCY | 2 cut(s) | 123, 442 |
| BstYI | RGATCY | 2 cut(s) | 123, 442 |
| BstZI | CGGCCG | 1 cut(s) | 195 |
| BsuRI | GGCC | 4 cut(s) | 197, 300, 404, 477 |
| BtgZI | GCGATG | 1 cut(s) | 576 |
| BtsCI | GGATG | 3 cut(s) | 59, 360, 478 |
| BtsIMutI | CAGTG | 1 cut(s) | 422 |
| Cac8I | GCNNGC | 4 cut(s) | 267, 271, 275, 530 |
| CfoI | GCGC | 2 cut(s) | 24, 528 |
| Csp6I | GTAC | 2 cut(s) | 139, 377 |
| CviAII | CATG | 2 cut(s) | 178, 188 |
| CviQI | GTAC | 2 cut(s) | 139, 377 |
| DdeI | CTNAG | 3 cut(s) | 150, 425, 567 |
| DpnI | GATC | 6 cut(s) | 125, 294, 344, 370, 444, 492 |
| DpnII | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| EaeI | YGGCCR | 1 cut(s) | 195 |
| EagI | CGGCCG | 1 cut(s) | 195 |
| Eam1104I | CTCTTC | 1 cut(s) | 516 |
| EarI | CTCTTC | 1 cut(s) | 516 |
| EclXI | CGGCCG | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 1 cut(s) | 438 |
| Eco24I | GRGCYC | 2 cut(s) | 391, 435 |
| Eco31I | GGTCTC | 1 cut(s) | 22 |
| Eco52I | CGGCCG | 1 cut(s) | 195 |
| Eco57I | CTGAAG | 3 cut(s) | 140, 500, 540 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 482 |
| EcoRII | CCWGG | 5 cut(s) | 10, 29, 132, 300, 552 |
| EcoT14I | CCWWGG | 1 cut(s) | 438 |
| EcoT38I | GRGCYC | 2 cut(s) | 391, 435 |
| ErhI | CCWWGG | 1 cut(s) | 438 |
| FaeI | CATG | 2 cut(s) | 181, 191 |
| FaiI | YATR | 7 cut(s) | 53, 68, 70, 95, 179, 189, 320 |
| FatI | CATG | 2 cut(s) | 177, 187 |
| FauNDI | CATATG | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 3 cut(s) | 278, 585, 588 |
| FokI | GGATG | 3 cut(s) | 46, 367, 485 |
| FriOI | GRGCYC | 2 cut(s) | 391, 435 |
| Fsp4HI | GCNGC | 3 cut(s) | 278, 585, 588 |
| GlaI | GCGC | 2 cut(s) | 23, 527 |
| GluI | GCNGC | 3 cut(s) | 278, 585, 588 |
| GsuI | CTGGAG | 2 cut(s) | 155, 401 |
| HaeII | RGCGCY | 1 cut(s) | 529 |
| HaeIII | GGCC | 4 cut(s) | 197, 300, 404, 477 |
| HapII | CCGG | 1 cut(s) | 142 |
| HhaI | GCGC | 2 cut(s) | 24, 528 |
| Hin1II | CATG | 2 cut(s) | 181, 191 |
| Hin6I | GCGC | 2 cut(s) | 22, 526 |
| HinP1I | GCGC | 2 cut(s) | 22, 526 |
| HinfI | GANTC | 1 cut(s) | 410 |
| HpaII | CCGG | 1 cut(s) | 142 |
| HphI | GGTGA | 1 cut(s) | 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 175 |
| Hpy188I | TCNGA | 1 cut(s) | 447 |
| Hpy188III | TCNNGA | 2 cut(s) | 152, 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 175 |
| Hpy99I | CGWCG | 1 cut(s) | 396 |
| HpyAV | CCTTC | 3 cut(s) | 332, 463, 475 |
| HpyCH4V | TGCA | 4 cut(s) | 66, 104, 280, 532 |
| HpyF3I | CTNAG | 3 cut(s) | 150, 425, 567 |
| Hsp92II | CATG | 2 cut(s) | 181, 191 |
| HspAI | GCGC | 2 cut(s) | 22, 526 |
| Kzo9I | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| LguI | GCTCTTC | 1 cut(s) | 516 |
| LmnI | GCTCC | 5 cut(s) | 244, 364, 424, 430, 574 |
| Lsp1109I | GCAGC | 2 cut(s) | 264, 574 |
| LweI | GCATC | 1 cut(s) | 553 |
| MaeIII | GTNAC | 2 cut(s) | 45, 456 |
| MalI | GATC | 6 cut(s) | 125, 294, 344, 370, 444, 492 |
| MboI | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| MboII | GAAGA | 2 cut(s) | 133, 533 |
| MflI | RGATCY | 2 cut(s) | 123, 442 |
| MhlI | GDGCHC | 3 cut(s) | 271, 391, 435 |
| MluCI | AATT | 2 cut(s) | 87, 181 |
| MmeI | TCCRAC | 4 cut(s) | 270, 342, 519, 552 |
| MspI | CCGG | 1 cut(s) | 142 |
| MspR9I | CCNGG | 6 cut(s) | 12, 31, 134, 143, 302, 554 |
| Mva1269I | GAATGC | 1 cut(s) | 120 |
| MvaI | CCWGG | 5 cut(s) | 12, 31, 134, 302, 554 |
| MvnI | CGCG | 3 cut(s) | 22, 561, 584 |
| NciI | CCSGG | 1 cut(s) | 143 |
| NdeI | CATATG | 1 cut(s) | 68 |
| NdeII | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| NlaIII | CATG | 2 cut(s) | 181, 191 |
| NlaIV | GGNNCC | 2 cut(s) | 57, 432 |
| NmeAIII | GCCGAG | 3 cut(s) | 173, 223, 430 |
| PasI | CCCWGGG | 1 cut(s) | 30 |
| PciSI | GCTCTTC | 1 cut(s) | 516 |
| PctI | GAATGC | 1 cut(s) | 120 |
| PfeI | GAWTC | 1 cut(s) | 410 |
| PfoI | TCCNGGA | 1 cut(s) | 552 |
| PkrI | GCNGC | 3 cut(s) | 279, 586, 589 |
| Psp6I | CCWGG | 5 cut(s) | 10, 29, 132, 300, 552 |
| PspGI | CCWGG | 5 cut(s) | 10, 29, 132, 300, 552 |
| PspN4I | GGNNCC | 2 cut(s) | 57, 432 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 167, 199 |
| PstI | CTGCAG | 1 cut(s) | 282 |
| PsuI | RGATCY | 2 cut(s) | 123, 442 |
| RsaI | GTAC | 2 cut(s) | 140, 378 |
| RsaNI | GTAC | 2 cut(s) | 139, 377 |
| SapI | GCTCTTC | 1 cut(s) | 516 |
| SatI | GCNGC | 3 cut(s) | 278, 585, 588 |
| Sau3AI | GATC | 6 cut(s) | 123, 292, 342, 368, 442, 490 |
| ScrFI | CCNGG | 6 cut(s) | 12, 31, 134, 143, 302, 554 |
| SduI | GDGCHC | 3 cut(s) | 271, 391, 435 |
| SfaNI | GCATC | 1 cut(s) | 553 |
| SfcI | CTRYAG | 2 cut(s) | 236, 278 |
| Sse9I | AATT | 2 cut(s) | 87, 181 |
| SsiI | CCGC | 2 cut(s) | 84, 584 |
| StyD4I | CCNGG | 6 cut(s) | 10, 29, 132, 141, 300, 552 |
| StyI | CCWWGG | 1 cut(s) | 438 |
| TasI | AATT | 2 cut(s) | 87, 181 |
| TatI | WGTACW | 1 cut(s) | 376 |
| TauI | GCSGC | 1 cut(s) | 587 |
| TfiI | GAWTC | 1 cut(s) | 410 |
| TscAI | CASTG | 1 cut(s) | 429 |
| TseI | GCWGC | 2 cut(s) | 277, 587 |
| TspDTI | ATGAA | 2 cut(s) | 194, 351 |
| TspRI | CASTG | 1 cut(s) | 429 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 482 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 66 |