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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 53, 184 |
| AccBSI | CCGCTC | 1 cut(s) | 197 |
| AccI | GTMKAC | 1 cut(s) | 222 |
| AccII | CGCG | 1 cut(s) | 102 |
| AciI | CCGC | 8 cut(s) | 10, 48, 51, 100, 116, 138, 197, 397 |
| AclWI | GGATC | 1 cut(s) | 116 |
| AcuI | CTGAAG | 1 cut(s) | 104 |
| AcvI | CACGTG | 1 cut(s) | 109 |
| AcyI | GRCGYC | 2 cut(s) | 54, 185 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 67, 131, 175, 232 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| Alw21I | GWGCWC | 1 cut(s) | 304 |
| Alw26I | GTCTC | 1 cut(s) | 21 |
| AlwI | GGATC | 1 cut(s) | 116 |
| Ama87I | CYCGRG | 2 cut(s) | 18, 305 |
| AoxI | GGCC | 2 cut(s) | 199, 333 |
| AspA2I | CCTAGG | 1 cut(s) | 130 |
| AspLEI | GCGC | 3 cut(s) | 56, 187, 390 |
| AspS9I | GGNCC | 3 cut(s) | 97, 199, 406 |
| AvaI | CYCGRG | 2 cut(s) | 18, 305 |
| AvaII | GGWCC | 2 cut(s) | 97, 406 |
| AvrII | CCTAGG | 1 cut(s) | 130 |
| AxyI | CCTNAGG | 1 cut(s) | 189 |
| BanI | GGYRCC | 2 cut(s) | 53, 184 |
| BbrPI | CACGTG | 1 cut(s) | 109 |
| Bbv12I | GWGCWC | 1 cut(s) | 304 |
| BccI | CCATC | 3 cut(s) | 65, 263, 397 |
| BcoDI | GTCTC | 1 cut(s) | 21 |
| BfaI | CTAG | 2 cut(s) | 131, 371 |
| BfoI | RGCGCY | 2 cut(s) | 57, 188 |
| BglII | AGATCT | 1 cut(s) | 373 |
| BisI | GCNGC | 2 cut(s) | 49, 52 |
| BlnI | CCTAGG | 1 cut(s) | 130 |
| BlsI | GCNGC | 2 cut(s) | 50, 53 |
| Bme18I | GGWCC | 2 cut(s) | 97, 406 |
| BmeT110I | CYCGRG | 2 cut(s) | 18, 305 |
| BmgT120I | GGNCC | 3 cut(s) | 97, 199, 406 |
| BmiI | GGNNCC | 3 cut(s) | 55, 98, 186 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BoxI | GACNNNNGTC | 1 cut(s) | 228 |
| BsaAI | YACGTR | 1 cut(s) | 109 |
| BsaHI | GRCGYC | 2 cut(s) | 54, 185 |
| BsaJI | CCNNGG | 3 cut(s) | 130, 226, 336 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 67, 131, 175, 232 |
| Bse118I | RCCGGY | 2 cut(s) | 168, 201 |
| Bse21I | CCTNAGG | 1 cut(s) | 189 |
| BseDI | CCNNGG | 3 cut(s) | 130, 226, 336 |
| BseGI | GGATG | 3 cut(s) | 57, 346, 408 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 67, 131, 175, 232 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseRI | GAGGAG | 1 cut(s) | 329 |
| Bsh1236I | CGCG | 1 cut(s) | 102 |
| BshFI | GGCC | 2 cut(s) | 201, 335 |
| BshNI | GGYRCC | 2 cut(s) | 53, 184 |
| BsiHKAI | GWGCWC | 1 cut(s) | 304 |
| BsiHKCI | CYCGRG | 2 cut(s) | 18, 305 |
| BsiSI | CCGG | 2 cut(s) | 169, 202 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 67, 131, 175, 232 |
| BsmAI | GTCTC | 1 cut(s) | 21 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsmI | GAATGC | 1 cut(s) | 50 |
| BsnI | GGCC | 2 cut(s) | 201, 335 |
| BsoBI | CYCGRG | 2 cut(s) | 18, 305 |
| Bsp1286I | GDGCHC | 1 cut(s) | 304 |
| Bsp143I | GATC | 3 cut(s) | 103, 121, 373 |
| BspACI | CCGC | 8 cut(s) | 10, 48, 51, 100, 116, 138, 197, 397 |
| BspANI | GGCC | 2 cut(s) | 201, 335 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspFNI | CGCG | 1 cut(s) | 102 |
| BspLI | GGNNCC | 3 cut(s) | 55, 98, 186 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BspT107I | GGYRCC | 2 cut(s) | 53, 184 |
| BsrBI | CCGCTC | 1 cut(s) | 197 |
| BsrFI | RCCGGY | 2 cut(s) | 168, 201 |
| BssAI | RCCGGY | 2 cut(s) | 168, 201 |
| BssECI | CCNNGG | 3 cut(s) | 130, 226, 336 |
| BssMI | GATC | 3 cut(s) | 103, 121, 373 |
| BssNI | GRCGYC | 2 cut(s) | 54, 185 |
| BssT1I | CCWWGG | 2 cut(s) | 130, 226 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstACI | GRCGYC | 2 cut(s) | 54, 185 |
| BstBAI | YACGTR | 1 cut(s) | 109 |
| BstC8I | GCNNGC | 3 cut(s) | 199, 258, 300 |
| BstDEI | CTNAG | 1 cut(s) | 189 |
| BstF5I | GGATG | 3 cut(s) | 57, 346, 408 |
| BstFNI | CGCG | 1 cut(s) | 102 |
| BstH2I | RGCGCY | 2 cut(s) | 57, 188 |
| BstHHI | GCGC | 3 cut(s) | 56, 187, 390 |
| BstKTI | GATC | 3 cut(s) | 106, 124, 376 |
| BstMAI | GTCTC | 1 cut(s) | 21 |
| BstMBI | GATC | 3 cut(s) | 103, 121, 373 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 135, 341, 394 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 228 |
| BstUI | CGCG | 1 cut(s) | 102 |
| BstX2I | RGATCY | 2 cut(s) | 121, 373 |
| BstYI | RGATCY | 2 cut(s) | 121, 373 |
| Bsu36I | CCTNAGG | 1 cut(s) | 189 |
| BsuRI | GGCC | 2 cut(s) | 201, 335 |
| BtsCI | GGATG | 3 cut(s) | 57, 346, 408 |
| Cac8I | GCNNGC | 3 cut(s) | 199, 258, 300 |
| CfoI | GCGC | 3 cut(s) | 56, 187, 390 |
| Cfr10I | RCCGGY | 2 cut(s) | 168, 201 |
| Cfr13I | GGNCC | 3 cut(s) | 97, 199, 406 |
| CseI | GACGC | 1 cut(s) | 77 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CviJI | RGCY | 7 cut(s) | 129, 145, 168, 201, 209, 320, 335 |
| CviKI_1 | RGCY | 7 cut(s) | 129, 145, 168, 201, 209, 320, 335 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 1 cut(s) | 189 |
| DinI | GGCGCC | 2 cut(s) | 55, 186 |
| DpnI | GATC | 3 cut(s) | 105, 123, 375 |
| DpnII | GATC | 3 cut(s) | 103, 121, 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| EciI | GGCGGA | 1 cut(s) | 412 |
| Eco130I | CCWWGG | 2 cut(s) | 130, 226 |
| Eco47I | GGWCC | 2 cut(s) | 97, 406 |
| Eco57I | CTGAAG | 1 cut(s) | 104 |
| Eco72I | CACGTG | 1 cut(s) | 109 |
| Eco81I | CCTNAGG | 1 cut(s) | 189 |
| Eco88I | CYCGRG | 2 cut(s) | 18, 305 |
| EcoT14I | CCWWGG | 2 cut(s) | 130, 226 |
| EgeI | GGCGCC | 2 cut(s) | 55, 186 |
| EheI | GGCGCC | 2 cut(s) | 55, 186 |
| ErhI | CCWWGG | 2 cut(s) | 130, 226 |
| FaiI | YATR | 4 cut(s) | 66, 68, 246, 251 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FauI | CCCGC | 3 cut(s) | 3, 131, 190 |
| FauNDI | CATATG | 1 cut(s) | 66 |
| FblI | GTMKAC | 1 cut(s) | 222 |
| Fnu4HI | GCNGC | 2 cut(s) | 49, 52 |
| FokI | GGATG | 3 cut(s) | 44, 353, 415 |
| Fsp4HI | GCNGC | 2 cut(s) | 49, 52 |
| FspBI | CTAG | 2 cut(s) | 131, 371 |
| GlaI | GCGC | 3 cut(s) | 55, 186, 389 |
| GluI | GCNGC | 2 cut(s) | 49, 52 |
| HaeII | RGCGCY | 2 cut(s) | 57, 188 |
| HaeIII | GGCC | 2 cut(s) | 201, 335 |
| HapII | CCGG | 2 cut(s) | 169, 202 |
| HgaI | GACGC | 1 cut(s) | 77 |
| HhaI | GCGC | 3 cut(s) | 56, 187, 390 |
| Hin1I | GRCGYC | 2 cut(s) | 54, 185 |
| Hin6I | GCGC | 3 cut(s) | 54, 185, 388 |
| HinP1I | GCGC | 3 cut(s) | 54, 185, 388 |
| HinfI | GANTC | 2 cut(s) | 14, 362 |
| HpaII | CCGG | 2 cut(s) | 169, 202 |
| Hpy166II | GTNNAC | 1 cut(s) | 223 |
| Hpy188I | TCNGA | 2 cut(s) | 383, 410 |
| Hpy188III | TCNNGA | 2 cut(s) | 18, 95 |
| Hpy8I | GTNNAC | 1 cut(s) | 223 |
| Hpy99I | CGWCG | 1 cut(s) | 327 |
| HpyAV | CCTTC | 2 cut(s) | 71, 378 |
| HpyCH4IV | ACGT | 1 cut(s) | 108 |
| HpyCH4V | TGCA | 1 cut(s) | 174 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 135, 341, 394 |
| HpyF3I | CTNAG | 1 cut(s) | 189 |
| HpySE526I | ACGT | 1 cut(s) | 108 |
| Hsp92I | GRCGYC | 2 cut(s) | 54, 185 |
| HspAI | GCGC | 3 cut(s) | 54, 185, 388 |
| KasI | GGCGCC | 2 cut(s) | 53, 184 |
| Kzo9I | GATC | 3 cut(s) | 103, 121, 373 |
| LmnI | GCTCC | 2 cut(s) | 194, 295 |
| LpnPI | CCDG | 3 cut(s) | 182, 201, 215 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 2 cut(s) | 131, 371 |
| MaeII | ACGT | 1 cut(s) | 108 |
| MalI | GATC | 3 cut(s) | 105, 123, 375 |
| MbiI | CCGCTC | 1 cut(s) | 197 |
| MboI | GATC | 3 cut(s) | 103, 121, 373 |
| MboII | GAAGA | 3 cut(s) | 131, 161, 294 |
| MflI | RGATCY | 2 cut(s) | 121, 373 |
| MhlI | GDGCHC | 1 cut(s) | 304 |
| Mly113I | GGCGCC | 2 cut(s) | 54, 185 |
| MlyI | GAGTC | 2 cut(s) | 23, 371 |
| MmeI | TCCRAC | 2 cut(s) | 273, 390 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| MspI | CCGG | 2 cut(s) | 169, 202 |
| Mva1269I | GAATGC | 1 cut(s) | 50 |
| MvnI | CGCG | 1 cut(s) | 102 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 135, 341, 394 |
| NarI | GGCGCC | 2 cut(s) | 54, 185 |
| NdeI | CATATG | 1 cut(s) | 66 |
| NdeII | GATC | 3 cut(s) | 103, 121, 373 |
| NlaIV | GGNNCC | 3 cut(s) | 55, 98, 186 |
| NmeAIII | GCCGAG | 1 cut(s) | 361 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PaeR7I | CTCGAG | 2 cut(s) | 18, 305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 153 |
| PctI | GAATGC | 1 cut(s) | 50 |
| PkrI | GCNGC | 2 cut(s) | 50, 53 |
| PleI | GAGTC | 2 cut(s) | 22, 370 |
| PluTI | GGCGCC | 2 cut(s) | 57, 188 |
| PmaCI | CACGTG | 1 cut(s) | 109 |
| PmlI | CACGTG | 1 cut(s) | 109 |
| PpsI | GAGTC | 2 cut(s) | 22, 370 |
| Ppu21I | YACGTR | 1 cut(s) | 109 |
| PshAI | GACNNNNGTC | 1 cut(s) | 228 |
| PspCI | CACGTG | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 3 cut(s) | 55, 98, 186 |
| PspPI | GGNCC | 3 cut(s) | 97, 199, 406 |
| PspXI | VCTCGAGB | 1 cut(s) | 305 |
| PsuI | RGATCY | 2 cut(s) | 121, 373 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SatI | GCNGC | 2 cut(s) | 49, 52 |
| Sau3AI | GATC | 3 cut(s) | 103, 121, 373 |
| Sau96I | GGNCC | 3 cut(s) | 97, 199, 406 |
| SchI | GAGTC | 2 cut(s) | 23, 371 |
| SduI | GDGCHC | 1 cut(s) | 304 |
| SetI | ASST | 6 cut(s) | 8, 111, 156, 232, 312, 372 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SfoI | GGCGCC | 2 cut(s) | 55, 186 |
| Sfr274I | CTCGAG | 2 cut(s) | 18, 305 |
| SinI | GGWCC | 2 cut(s) | 97, 406 |
| SlaI | CTCGAG | 2 cut(s) | 18, 305 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| SmlI | CTYRAG | 2 cut(s) | 18, 305 |
| SmoI | CTYRAG | 2 cut(s) | 18, 305 |
| SsiI | CCGC | 8 cut(s) | 10, 48, 51, 100, 116, 138, 197, 397 |
| SspDI | GGCGCC | 2 cut(s) | 53, 184 |
| SspMI | CTAG | 2 cut(s) | 131, 371 |
| StyI | CCWWGG | 2 cut(s) | 130, 226 |
| TaiI | ACGT | 1 cut(s) | 111 |
| TaqI | TCGA | 4 cut(s) | 19, 147, 156, 306 |
| TauI | GCSGC | 2 cut(s) | 51, 54 |
| TspDTI | ATGAA | 1 cut(s) | 53 |
| TspGWI | ACGGA | 1 cut(s) | 342 |
| VpaK11BI | GGWCC | 2 cut(s) | 97, 406 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 64 |
| XhoI | CTCGAG | 2 cut(s) | 18, 305 |
| XmaJI | CCTAGG | 1 cut(s) | 130 |
| XmiI | GTMKAC | 1 cut(s) | 222 |
| XspI | CTAG | 2 cut(s) | 131, 371 |