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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 123 |
| AciI | CCGC | 4 cut(s) | 65, 117, 121, 123 |
| AcoI | YGGCCR | 2 cut(s) | 118, 124 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 23 |
| AgsI | TTSAA | 2 cut(s) | 14, 211 |
| AluBI | AGCT | 2 cut(s) | 43, 146 |
| AluI | AGCT | 2 cut(s) | 43, 146 |
| Ama87I | CYCGRG | 1 cut(s) | 81 |
| AoxI | GGCC | 3 cut(s) | 118, 124, 153 |
| ApeKI | GCWGC | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 1 cut(s) | 38 |
| AsuII | TTCGAA | 1 cut(s) | 149 |
| AvaI | CYCGRG | 1 cut(s) | 81 |
| BbvI | GCAGC | 1 cut(s) | 157 |
| BccI | CCATC | 5 cut(s) | 158, 233, 257, 272, 291 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 239, 273 |
| BfaI | CTAG | 1 cut(s) | 87 |
| BisI | GCNGC | 4 cut(s) | 118, 121, 124, 171 |
| BlsI | GCNGC | 4 cut(s) | 119, 122, 125, 172 |
| BmeT110I | CYCGRG | 1 cut(s) | 81 |
| BmiI | GGNNCC | 1 cut(s) | 244 |
| BmsI | GCATC | 1 cut(s) | 25 |
| Bpu14I | TTCGAA | 1 cut(s) | 149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 1 cut(s) | 121 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 23 |
| Bse118I | RCCGGY | 1 cut(s) | 23 |
| Bse8I | GATNNNNATC | 1 cut(s) | 189 |
| BseDI | CCNNGG | 1 cut(s) | 121 |
| BseGI | GGATG | 4 cut(s) | 40, 73, 244, 283 |
| BseJI | GATNNNNATC | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 23 |
| BseX3I | CGGCCG | 1 cut(s) | 118 |
| BseXI | GCAGC | 1 cut(s) | 157 |
| Bsh1236I | CGCG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 1 cut(s) | 121 |
| BshFI | GGCC | 3 cut(s) | 120, 126, 155 |
| BsiEI | CGRYCG | 1 cut(s) | 121 |
| BsiHKCI | CYCGRG | 1 cut(s) | 81 |
| BsiSI | CCGG | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 23 |
| BsmI | GAATGC | 3 cut(s) | 107, 230, 250 |
| BsnI | GGCC | 3 cut(s) | 120, 126, 155 |
| BsoBI | CYCGRG | 1 cut(s) | 81 |
| Bsp119I | TTCGAA | 1 cut(s) | 149 |
| Bsp143I | GATC | 2 cut(s) | 184, 285 |
| BspACI | CCGC | 4 cut(s) | 65, 117, 121, 123 |
| BspANI | GGCC | 3 cut(s) | 120, 126, 155 |
| BspFNI | CGCG | 1 cut(s) | 123 |
| BspLI | GGNNCC | 1 cut(s) | 244 |
| BspT104I | TTCGAA | 1 cut(s) | 149 |
| BsrFI | RCCGGY | 1 cut(s) | 23 |
| BssAI | RCCGGY | 1 cut(s) | 23 |
| BssECI | CCNNGG | 1 cut(s) | 121 |
| BssMI | GATC | 2 cut(s) | 184, 285 |
| BstBI | TTCGAA | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 1 cut(s) | 314 |
| BstDSI | CCRYGG | 1 cut(s) | 121 |
| BstF5I | GGATG | 4 cut(s) | 40, 73, 244, 283 |
| BstFNI | CGCG | 1 cut(s) | 123 |
| BstKTI | GATC | 2 cut(s) | 187, 288 |
| BstMBI | GATC | 2 cut(s) | 184, 285 |
| BstMCI | CGRYCG | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 123, 152 |
| BstUI | CGCG | 1 cut(s) | 123 |
| BstV1I | GCAGC | 1 cut(s) | 157 |
| BstZI | CGGCCG | 1 cut(s) | 118 |
| BsuRI | GGCC | 3 cut(s) | 120, 126, 155 |
| BtgI | CCRYGG | 1 cut(s) | 121 |
| BtsCI | GGATG | 4 cut(s) | 40, 73, 244, 283 |
| Cac8I | GCNNGC | 1 cut(s) | 314 |
| CciNI | GCGGCCGC | 1 cut(s) | 118 |
| Cfr10I | RCCGGY | 1 cut(s) | 23 |
| Cfr42I | CCGCGG | 1 cut(s) | 124 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviJI | RGCY | 8 cut(s) | 23, 43, 86, 120, 126, 146, 155, 245 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 43, 86, 120, 126, 146, 155, 245 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DpnI | GATC | 2 cut(s) | 186, 287 |
| DpnII | GATC | 2 cut(s) | 184, 285 |
| EaeI | YGGCCR | 2 cut(s) | 118, 124 |
| EagI | CGGCCG | 1 cut(s) | 118 |
| EclXI | CGGCCG | 1 cut(s) | 118 |
| Eco52I | CGGCCG | 1 cut(s) | 118 |
| Eco88I | CYCGRG | 1 cut(s) | 81 |
| FaiI | YATR | 1 cut(s) | 310 |
| Fnu4HI | GCNGC | 4 cut(s) | 118, 121, 124, 171 |
| FokI | GGATG | 4 cut(s) | 47, 80, 251, 290 |
| Fsp4HI | GCNGC | 4 cut(s) | 118, 121, 124, 171 |
| FspBI | CTAG | 1 cut(s) | 87 |
| GluI | GCNGC | 4 cut(s) | 118, 121, 124, 171 |
| HaeIII | GGCC | 3 cut(s) | 120, 126, 155 |
| HapII | CCGG | 1 cut(s) | 24 |
| HincII | GTYRAC | 1 cut(s) | 223 |
| HindII | GTYRAC | 1 cut(s) | 223 |
| HindIII | AAGCTT | 1 cut(s) | 144 |
| HinfI | GANTC | 1 cut(s) | 256 |
| HpaI | GTTAAC | 1 cut(s) | 223 |
| HpaII | CCGG | 1 cut(s) | 24 |
| HphI | GGTGA | 1 cut(s) | 38 |
| Hpy166II | GTNNAC | 1 cut(s) | 223 |
| Hpy188I | TCNGA | 1 cut(s) | 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 260, 289 |
| Hpy8I | GTNNAC | 1 cut(s) | 223 |
| HpyAV | CCTTC | 2 cut(s) | 25, 145 |
| HpyCH4V | TGCA | 3 cut(s) | 107, 250, 312 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 123, 152 |
| KspAI | GTTAAC | 1 cut(s) | 223 |
| KspI | CCGCGG | 1 cut(s) | 124 |
| Kzo9I | GATC | 2 cut(s) | 184, 285 |
| LmnI | GCTCC | 1 cut(s) | 242 |
| LpnPI | CCDG | 2 cut(s) | 37, 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 157 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeI | CTAG | 1 cut(s) | 87 |
| MalI | GATC | 2 cut(s) | 186, 287 |
| MboI | GATC | 2 cut(s) | 184, 285 |
| MluCI | AATT | 1 cut(s) | 205 |
| MseI | TTAA | 2 cut(s) | 53, 222 |
| MspA1I | CMGCKG | 1 cut(s) | 123 |
| MspI | CCGG | 1 cut(s) | 24 |
| Mva1269I | GAATGC | 3 cut(s) | 107, 230, 250 |
| MvnI | CGCG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 123, 152 |
| NdeII | GATC | 2 cut(s) | 184, 285 |
| NlaIV | GGNNCC | 1 cut(s) | 244 |
| NmeAIII | GCCGAG | 1 cut(s) | 123 |
| NotI | GCGGCCGC | 1 cut(s) | 118 |
| NspV | TTCGAA | 1 cut(s) | 149 |
| PctI | GAATGC | 3 cut(s) | 107, 230, 250 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PkrI | GCNGC | 4 cut(s) | 119, 122, 125, 172 |
| PspN4I | GGNNCC | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| SacII | CCGCGG | 1 cut(s) | 124 |
| SaqAI | TTAA | 2 cut(s) | 53, 222 |
| SatI | GCNGC | 4 cut(s) | 118, 121, 124, 171 |
| Sau3AI | GATC | 2 cut(s) | 184, 285 |
| SetI | ASST | 5 cut(s) | 45, 95, 135, 148, 222 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| Sfr303I | CCGCGG | 1 cut(s) | 124 |
| SfuI | TTCGAA | 1 cut(s) | 149 |
| SgrBI | CCGCGG | 1 cut(s) | 124 |
| Sse9I | AATT | 1 cut(s) | 205 |
| SsiI | CCGC | 4 cut(s) | 65, 117, 121, 123 |
| SspMI | CTAG | 1 cut(s) | 87 |
| TaqI | TCGA | 3 cut(s) | 149, 183, 254 |
| TasI | AATT | 1 cut(s) | 205 |
| TauI | GCSGC | 3 cut(s) | 120, 123, 126 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 2 cut(s) | 53, 222 |
| Tru9I | TTAA | 2 cut(s) | 53, 222 |
| TseI | GCWGC | 1 cut(s) | 170 |
| TspDTI | ATGAA | 1 cut(s) | 84 |
| XspI | CTAG | 1 cut(s) | 87 |