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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 208 |
| AciI | CCGC | 6 cut(s) | 7, 76, 145, 193, 208, 269 |
| AcuI | CTGAAG | 2 cut(s) | 222, 419 |
| AfaI | GTAC | 1 cut(s) | 376 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 109, 268 |
| AgeI | ACCGGT | 1 cut(s) | 131 |
| AgsI | TTSAA | 2 cut(s) | 109, 331 |
| AluBI | AGCT | 4 cut(s) | 139, 259, 287, 433 |
| AluI | AGCT | 4 cut(s) | 139, 259, 287, 433 |
| Alw21I | GWGCWC | 1 cut(s) | 261 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| Ama87I | CYCGRG | 1 cut(s) | 366 |
| AoxI | GGCC | 7 cut(s) | 84, 93, 147, 165, 270, 417, 441 |
| ApeKI | GCWGC | 2 cut(s) | 139, 142 |
| AsiGI | ACCGGT | 1 cut(s) | 131 |
| AspS9I | GGNCC | 3 cut(s) | 147, 190, 418 |
| AvaI | CYCGRG | 1 cut(s) | 366 |
| AvaII | GGWCC | 1 cut(s) | 190 |
| BanII | GRGCYC | 1 cut(s) | 261 |
| Bbv12I | GWGCWC | 1 cut(s) | 261 |
| BbvI | GCAGC | 2 cut(s) | 126, 154 |
| BccI | CCATC | 1 cut(s) | 14 |
| BceAI | ACGGC | 1 cut(s) | 80 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 8, 42, 292, 326 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 372 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 4 cut(s) | 77, 140, 143, 270 |
| BlsI | GCNGC | 4 cut(s) | 78, 141, 144, 271 |
| Bme18I | GGWCC | 1 cut(s) | 190 |
| BmeT110I | CYCGRG | 1 cut(s) | 366 |
| BmgT120I | GGNCC | 3 cut(s) | 147, 190, 418 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 4 cut(s) | 150, 168, 273, 414 |
| BsaWI | WCCGGW | 1 cut(s) | 131 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 109, 268 |
| Bse118I | RCCGGY | 2 cut(s) | 131, 357 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| BseDI | CCNNGG | 4 cut(s) | 150, 168, 273, 414 |
| BseGI | GGATG | 2 cut(s) | 325, 358 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 109, 268 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| BseRI | GAGGAG | 1 cut(s) | 46 |
| BseXI | GCAGC | 2 cut(s) | 126, 154 |
| Bsh1285I | CGRYCG | 2 cut(s) | 312, 414 |
| BshFI | GGCC | 7 cut(s) | 86, 95, 149, 167, 272, 419, 443 |
| BshTI | ACCGGT | 1 cut(s) | 131 |
| BsiEI | CGRYCG | 2 cut(s) | 312, 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 261 |
| BsiHKCI | CYCGRG | 1 cut(s) | 366 |
| BsiSI | CCGG | 2 cut(s) | 132, 358 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 109, 268 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsnI | GGCC | 7 cut(s) | 86, 95, 149, 167, 272, 419, 443 |
| BsoBI | CYCGRG | 1 cut(s) | 366 |
| Bsp1286I | GDGCHC | 1 cut(s) | 261 |
| Bsp143I | GATC | 3 cut(s) | 298, 309, 362 |
| BspACI | CCGC | 6 cut(s) | 7, 76, 145, 193, 208, 269 |
| BspANI | GGCC | 7 cut(s) | 86, 95, 149, 167, 272, 419, 443 |
| BspMAI | CTGCAG | 1 cut(s) | 144 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BsrBI | CCGCTC | 1 cut(s) | 208 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BsrFI | RCCGGY | 2 cut(s) | 131, 357 |
| BssAI | RCCGGY | 2 cut(s) | 131, 357 |
| BssECI | CCNNGG | 4 cut(s) | 150, 168, 273, 414 |
| BssMI | GATC | 3 cut(s) | 298, 309, 362 |
| BssT1I | CCWWGG | 2 cut(s) | 168, 273 |
| Bst6I | CTCTTC | 3 cut(s) | 84, 168, 198 |
| BstC8I | GCNNGC | 2 cut(s) | 9, 147 |
| BstF5I | GGATG | 2 cut(s) | 325, 358 |
| BstKTI | GATC | 3 cut(s) | 301, 312, 365 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 3 cut(s) | 298, 309, 362 |
| BstMCI | CGRYCG | 2 cut(s) | 312, 414 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 416 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 2 cut(s) | 126, 154 |
| BsuRI | GGCC | 7 cut(s) | 86, 95, 149, 167, 272, 419, 443 |
| BtgZI | GCGATG | 1 cut(s) | 258 |
| BtsCI | GGATG | 2 cut(s) | 325, 358 |
| Cac8I | GCNNGC | 2 cut(s) | 9, 147 |
| Cfr10I | RCCGGY | 2 cut(s) | 131, 357 |
| Cfr13I | GGNCC | 3 cut(s) | 147, 190, 418 |
| Csp6I | GTAC | 1 cut(s) | 375 |
| CspAI | ACCGGT | 1 cut(s) | 131 |
| CviQI | GTAC | 1 cut(s) | 375 |
| DpnI | GATC | 3 cut(s) | 300, 311, 364 |
| DpnII | GATC | 3 cut(s) | 298, 309, 362 |
| DraI | TTTAAA | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 3 cut(s) | 84, 168, 198 |
| EarI | CTCTTC | 3 cut(s) | 84, 168, 198 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 2 cut(s) | 168, 273 |
| Eco147I | AGGCCT | 1 cut(s) | 167 |
| Eco24I | GRGCYC | 1 cut(s) | 261 |
| Eco47I | GGWCC | 1 cut(s) | 190 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| Eco57I | CTGAAG | 2 cut(s) | 222, 419 |
| Eco88I | CYCGRG | 1 cut(s) | 366 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoT14I | CCWWGG | 2 cut(s) | 168, 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 261 |
| ErhI | CCWWGG | 2 cut(s) | 168, 273 |
| FauI | CCCGC | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 4 cut(s) | 77, 140, 143, 270 |
| FokI | GGATG | 2 cut(s) | 332, 365 |
| FriOI | GRGCYC | 1 cut(s) | 261 |
| Fsp4HI | GCNGC | 4 cut(s) | 77, 140, 143, 270 |
| FspBI | CTAG | 1 cut(s) | 372 |
| GluI | GCNGC | 4 cut(s) | 77, 140, 143, 270 |
| HaeIII | GGCC | 7 cut(s) | 86, 95, 149, 167, 272, 419, 443 |
| HapII | CCGG | 2 cut(s) | 132, 358 |
| HindIII | AAGCTT | 1 cut(s) | 431 |
| HinfI | GANTC | 2 cut(s) | 113, 218 |
| HpaII | CCGG | 2 cut(s) | 132, 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 2 cut(s) | 223, 438 |
| Hpy188III | TCNNGA | 2 cut(s) | 296, 313 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyAV | CCTTC | 6 cut(s) | 103, 233, 310, 337, 388, 433 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 235, 393 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 416 |
| Kzo9I | GATC | 3 cut(s) | 298, 309, 362 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LmnI | GCTCC | 3 cut(s) | 256, 264, 292 |
| LpnPI | CCDG | 4 cut(s) | 41, 65, 145, 371 |
| Lsp1109I | GCAGC | 2 cut(s) | 126, 154 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 1 cut(s) | 372 |
| MalI | GATC | 3 cut(s) | 300, 311, 364 |
| MbiI | CCGCTC | 1 cut(s) | 208 |
| MboI | GATC | 3 cut(s) | 298, 309, 362 |
| MboII | GAAGA | 3 cut(s) | 101, 185, 215 |
| MhlI | GDGCHC | 1 cut(s) | 261 |
| MluCI | AATT | 2 cut(s) | 118, 335 |
| MmeI | TCCRAC | 2 cut(s) | 24, 234 |
| MnlI | CCTC | 9 cut(s) | 24, 76, 85, 145, 169, 181, 271, 340, 409 |
| MseI | TTAA | 2 cut(s) | 161, 338 |
| MspA1I | CMGCKG | 1 cut(s) | 145 |
| MspI | CCGG | 2 cut(s) | 132, 358 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 416 |
| NdeII | GATC | 3 cut(s) | 298, 309, 362 |
| NmeAIII | GCCGAG | 2 cut(s) | 175, 274 |
| PceI | AGGCCT | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 2 cut(s) | 113, 218 |
| PinAI | ACCGGT | 1 cut(s) | 131 |
| PkrI | GCNGC | 4 cut(s) | 78, 141, 144, 271 |
| Ple19I | CGATCG | 1 cut(s) | 312 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| PspPI | GGNCC | 3 cut(s) | 147, 190, 418 |
| PstI | CTGCAG | 1 cut(s) | 144 |
| PvuI | CGATCG | 1 cut(s) | 312 |
| RsaI | GTAC | 1 cut(s) | 376 |
| RsaNI | GTAC | 1 cut(s) | 375 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SaqAI | TTAA | 2 cut(s) | 161, 338 |
| SatI | GCNGC | 4 cut(s) | 77, 140, 143, 270 |
| Sau3AI | GATC | 3 cut(s) | 298, 309, 362 |
| Sau96I | GGNCC | 3 cut(s) | 147, 190, 418 |
| SduI | GDGCHC | 1 cut(s) | 261 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 92 |
| SinI | GGWCC | 1 cut(s) | 190 |
| Sse9I | AATT | 2 cut(s) | 118, 335 |
| SseBI | AGGCCT | 1 cut(s) | 167 |
| SsiI | CCGC | 6 cut(s) | 7, 76, 145, 193, 208, 269 |
| SspMI | CTAG | 1 cut(s) | 372 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StuI | AGGCCT | 1 cut(s) | 167 |
| StyI | CCWWGG | 2 cut(s) | 168, 273 |
| TaqI | TCGA | 1 cut(s) | 312 |
| TaqII | GACCGA | 1 cut(s) | 428 |
| TasI | AATT | 2 cut(s) | 118, 335 |
| TauI | GCSGC | 2 cut(s) | 79, 272 |
| TfiI | GAWTC | 2 cut(s) | 113, 218 |
| Tru1I | TTAA | 2 cut(s) | 161, 338 |
| Tru9I | TTAA | 2 cut(s) | 161, 338 |
| TseI | GCWGC | 2 cut(s) | 139, 142 |
| TspGWI | ACGGA | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 190 |
| XspI | CTAG | 1 cut(s) | 372 |