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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 316 |
| AccI | GTMKAC | 1 cut(s) | 57 |
| AccII | CGCG | 1 cut(s) | 62 |
| AciI | CCGC | 6 cut(s) | 9, 16, 171, 203, 218, 316 |
| AclWI | GGATC | 3 cut(s) | 45, 194, 263 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 15, 96, 97, 164, 209, 289, 352 |
| AluBI | AGCT | 4 cut(s) | 87, 96, 298, 328 |
| AluI | AGCT | 4 cut(s) | 87, 96, 298, 328 |
| Alw21I | GWGCWC | 1 cut(s) | 340 |
| Alw44I | GTGCAC | 1 cut(s) | 336 |
| AlwI | GGATC | 3 cut(s) | 45, 194, 263 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| AoxI | GGCC | 1 cut(s) | 318 |
| ApaI | GGGCCC | 1 cut(s) | 322 |
| ApaLI | GTGCAC | 1 cut(s) | 336 |
| ApeKI | GCWGC | 3 cut(s) | 168, 286, 328 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 110 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AspS9I | GGNCC | 2 cut(s) | 318, 319 |
| AsuC2I | CCSGG | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 3 cut(s) | 32, 43, 147 |
| BaeGI | GKGCMC | 2 cut(s) | 322, 340 |
| BanII | GRGCYC | 1 cut(s) | 322 |
| BauI | CACGAG | 1 cut(s) | 190 |
| Bbv12I | GWGCWC | 1 cut(s) | 340 |
| BbvCI | CCTCAGC | 1 cut(s) | 28 |
| BbvI | GCAGC | 3 cut(s) | 180, 298, 315 |
| BceAI | ACGGC | 1 cut(s) | 49 |
| BcnI | CCSGG | 1 cut(s) | 211 |
| BfaI | CTAG | 2 cut(s) | 12, 341 |
| BfmI | CTRYAG | 1 cut(s) | 329 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 75 |
| BisI | GCNGC | 4 cut(s) | 169, 219, 287, 329 |
| BlsI | GCNGC | 4 cut(s) | 170, 220, 288, 330 |
| Bme1390I | CCNGG | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 2 cut(s) | 318, 319 |
| BmiI | GGNNCC | 1 cut(s) | 320 |
| BmrFI | CCNGG | 1 cut(s) | 211 |
| BmsI | GCATC | 2 cut(s) | 87, 195 |
| BoxI | GACNNNNGTC | 1 cut(s) | 348 |
| Bpu10I | CCTNAGC | 1 cut(s) | 28 |
| BpuMI | CCSGG | 1 cut(s) | 211 |
| Bsa29I | ATCGAT | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 346 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 15, 96, 97, 164, 209, 289, 352 |
| BseCI | ATCGAT | 1 cut(s) | 198 |
| BseDI | CCNNGG | 1 cut(s) | 346 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 15, 96, 97, 164, 209, 289, 352 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BseRI | GAGGAG | 1 cut(s) | 136 |
| BseSI | GKGCMC | 2 cut(s) | 322, 340 |
| BseXI | GCAGC | 3 cut(s) | 180, 298, 315 |
| BseYI | CCCAGC | 2 cut(s) | 96, 282 |
| Bsh1236I | CGCG | 1 cut(s) | 62 |
| BshFI | GGCC | 1 cut(s) | 320 |
| BshVI | ATCGAT | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 1 cut(s) | 340 |
| BsiSI | CCGG | 1 cut(s) | 210 |
| BslFI | GGGAC | 1 cut(s) | 102 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 15, 96, 97, 164, 209, 289, 352 |
| BsmFI | GGGAC | 1 cut(s) | 102 |
| BsmI | GAATGC | 1 cut(s) | 365 |
| BsnI | GGCC | 1 cut(s) | 320 |
| Bsp120I | GGGCCC | 1 cut(s) | 318 |
| Bsp1286I | GDGCHC | 2 cut(s) | 322, 340 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 4 cut(s) | 37, 48, 199, 268 |
| BspACI | CCGC | 6 cut(s) | 9, 16, 171, 203, 218, 316 |
| BspANI | GGCC | 1 cut(s) | 320 |
| BspCNI | CTCAG | 1 cut(s) | 41 |
| BspDI | ATCGAT | 1 cut(s) | 198 |
| BspFNI | CGCG | 1 cut(s) | 62 |
| BspLI | GGNNCC | 1 cut(s) | 320 |
| BspMAI | CTGCAG | 1 cut(s) | 333 |
| BspPI | GGATC | 3 cut(s) | 45, 194, 263 |
| BsrBI | CCGCTC | 1 cut(s) | 316 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BssECI | CCNNGG | 1 cut(s) | 346 |
| BssMI | GATC | 4 cut(s) | 37, 48, 199, 268 |
| BssSI | CACGAG | 1 cut(s) | 190 |
| BssT1I | CCWWGG | 1 cut(s) | 346 |
| Bst2BI | CACGAG | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 1 cut(s) | 55 |
| Bst6I | CTCTTC | 1 cut(s) | 154 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 318 |
| BstDEI | CTNAG | 1 cut(s) | 28 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 162 |
| BstFNI | CGCG | 1 cut(s) | 62 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 4 cut(s) | 40, 51, 202, 271 |
| BstMBI | GATC | 4 cut(s) | 37, 48, 199, 268 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 17, 75, 84, 93, 295 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 348 |
| BstSCI | CCNGG | 1 cut(s) | 209 |
| BstSFI | CTRYAG | 1 cut(s) | 329 |
| BstSLI | GKGCMC | 2 cut(s) | 322, 340 |
| BstUI | CGCG | 1 cut(s) | 62 |
| BstV1I | GCAGC | 3 cut(s) | 180, 298, 315 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 245 |
| Bsu15I | ATCGAT | 1 cut(s) | 198 |
| BsuRI | GGCC | 1 cut(s) | 320 |
| BsuTUI | ATCGAT | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 318 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Cfr13I | GGNCC | 2 cut(s) | 318, 319 |
| ClaI | ATCGAT | 1 cut(s) | 198 |
| CseI | GACGC | 2 cut(s) | 21, 68 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 1 cut(s) | 323 |
| CviJI | RGCY | 9 cut(s) | 20, 87, 96, 221, 260, 281, 298, 320, 328 |
| CviKI_1 | RGCY | 9 cut(s) | 20, 87, 96, 221, 260, 281, 298, 320, 328 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 1 cut(s) | 28 |
| DpnI | GATC | 4 cut(s) | 39, 50, 201, 270 |
| DpnII | GATC | 4 cut(s) | 37, 48, 199, 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 154 |
| EarI | CTCTTC | 1 cut(s) | 154 |
| EciI | GGCGGA | 1 cut(s) | 192 |
| Eco130I | CCWWGG | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 322 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 162 |
| EcoT14I | CCWWGG | 1 cut(s) | 346 |
| EcoT38I | GRGCYC | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 346 |
| FaeI | CATG | 1 cut(s) | 326 |
| FaiI | YATR | 5 cut(s) | 161, 180, 278, 324, 371 |
| FaqI | GGGAC | 1 cut(s) | 102 |
| FatI | CATG | 1 cut(s) | 322 |
| FauI | CCCGC | 2 cut(s) | 9, 309 |
| FblI | GTMKAC | 1 cut(s) | 57 |
| Fnu4HI | GCNGC | 4 cut(s) | 169, 219, 287, 329 |
| FriOI | GRGCYC | 1 cut(s) | 322 |
| Fsp4HI | GCNGC | 4 cut(s) | 169, 219, 287, 329 |
| FspBI | CTAG | 2 cut(s) | 12, 341 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 4 cut(s) | 169, 219, 287, 329 |
| GsaI | CCCAGC | 2 cut(s) | 100, 286 |
| HaeIII | GGCC | 1 cut(s) | 320 |
| HapII | CCGG | 1 cut(s) | 210 |
| HgaI | GACGC | 2 cut(s) | 21, 68 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 1 cut(s) | 326 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HincII | GTYRAC | 1 cut(s) | 58 |
| HindII | GTYRAC | 1 cut(s) | 58 |
| HpaII | CCGG | 1 cut(s) | 210 |
| HphI | GGTGA | 3 cut(s) | 32, 43, 147 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 58, 226, 338 |
| Hpy188I | TCNGA | 2 cut(s) | 37, 273 |
| Hpy188III | TCNNGA | 2 cut(s) | 190, 307 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 58, 226, 338 |
| Hpy99I | CGWCG | 4 cut(s) | 37, 59, 62, 368 |
| HpyCH4III | ACNGT | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 2 cut(s) | 331, 338 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 17, 75, 84, 93, 295 |
| HpyF3I | CTNAG | 1 cut(s) | 28 |
| Hsp92II | CATG | 1 cut(s) | 326 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 4 cut(s) | 37, 48, 199, 268 |
| LmnI | GCTCC | 3 cut(s) | 92, 295, 313 |
| LpnPI | CCDG | 9 cut(s) | 59, 82, 104, 223, 231, 242, 275, 296, 338 |
| Lsp1109I | GCAGC | 3 cut(s) | 180, 298, 315 |
| LweI | GCATC | 2 cut(s) | 87, 195 |
| MaeI | CTAG | 2 cut(s) | 12, 341 |
| MalI | GATC | 4 cut(s) | 39, 50, 201, 270 |
| MbiI | CCGCTC | 1 cut(s) | 316 |
| MboI | GATC | 4 cut(s) | 37, 48, 199, 268 |
| MboII | GAAGA | 2 cut(s) | 141, 150 |
| MhlI | GDGCHC | 2 cut(s) | 322, 340 |
| MluCI | AATT | 1 cut(s) | 232 |
| MmeI | TCCRAC | 1 cut(s) | 15 |
| MnlI | CCTC | 7 cut(s) | 37, 154, 157, 163, 253, 303, 366 |
| MroXI | GAANNNNTTC | 1 cut(s) | 110 |
| MspA1I | CMGCKG | 2 cut(s) | 171, 218 |
| MspI | CCGG | 1 cut(s) | 210 |
| MspR9I | CCNGG | 1 cut(s) | 211 |
| Mva1269I | GAATGC | 1 cut(s) | 365 |
| MvnI | CGCG | 1 cut(s) | 62 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 17, 75, 84, 93, 295 |
| NciI | CCSGG | 1 cut(s) | 211 |
| NdeII | GATC | 4 cut(s) | 37, 48, 199, 268 |
| NlaIII | CATG | 1 cut(s) | 326 |
| NlaIV | GGNNCC | 1 cut(s) | 320 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 246 |
| PctI | GAATGC | 1 cut(s) | 365 |
| PdmI | GAANNNNTTC | 1 cut(s) | 110 |
| PkrI | GCNGC | 4 cut(s) | 170, 220, 288, 330 |
| PshAI | GACNNNNGTC | 1 cut(s) | 348 |
| PspFI | CCCAGC | 2 cut(s) | 96, 282 |
| PspN4I | GGNNCC | 1 cut(s) | 320 |
| PspOMI | GGGCCC | 1 cut(s) | 318 |
| PspPI | GGNCC | 2 cut(s) | 318, 319 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 218, 250 |
| PstI | CTGCAG | 1 cut(s) | 333 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SalI | GTCGAC | 1 cut(s) | 56 |
| SatI | GCNGC | 4 cut(s) | 169, 219, 287, 329 |
| Sau3AI | GATC | 4 cut(s) | 37, 48, 199, 268 |
| Sau96I | GGNCC | 2 cut(s) | 318, 319 |
| ScrFI | CCNGG | 1 cut(s) | 211 |
| SduI | GDGCHC | 2 cut(s) | 322, 340 |
| SfaNI | GCATC | 2 cut(s) | 87, 195 |
| SfcI | CTRYAG | 1 cut(s) | 329 |
| SgrDI | CGTCGACG | 1 cut(s) | 56 |
| Sse9I | AATT | 1 cut(s) | 232 |
| SsiI | CCGC | 6 cut(s) | 9, 16, 171, 203, 218, 316 |
| SspMI | CTAG | 2 cut(s) | 12, 341 |
| StyD4I | CCNGG | 1 cut(s) | 209 |
| StyI | CCWWGG | 1 cut(s) | 346 |
| TaaI | ACNGT | 1 cut(s) | 55 |
| TaqI | TCGA | 4 cut(s) | 57, 125, 198, 306 |
| TasI | AATT | 1 cut(s) | 232 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TauI | GCSGC | 1 cut(s) | 221 |
| TseI | GCWGC | 3 cut(s) | 168, 286, 328 |
| VneI | GTGCAC | 1 cut(s) | 336 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 162 |
| XmiI | GTMKAC | 1 cut(s) | 57 |
| XmnI | GAANNNNTTC | 1 cut(s) | 110 |
| XspI | CTAG | 2 cut(s) | 12, 341 |