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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 250 |
| AccII | CGCG | 2 cut(s) | 228, 555 |
| AciI | CCGC | 2 cut(s) | 369, 419 |
| AclWI | GGATC | 3 cut(s) | 257, 441, 499 |
| AcuI | CTGAAG | 1 cut(s) | 92 |
| AfaI | GTAC | 1 cut(s) | 337 |
| AgsI | TTSAA | 3 cut(s) | 44, 127, 461 |
| AluBI | AGCT | 6 cut(s) | 131, 246, 332, 394, 469, 641 |
| AluI | AGCT | 6 cut(s) | 131, 246, 332, 394, 469, 641 |
| Alw26I | GTCTC | 1 cut(s) | 371 |
| AlwI | GGATC | 3 cut(s) | 257, 441, 499 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 119, 644 |
| Ama87I | CYCGRG | 1 cut(s) | 327 |
| AoxI | GGCC | 2 cut(s) | 402, 492 |
| ApaI | GGGCCC | 1 cut(s) | 496 |
| ApeKI | GCWGC | 4 cut(s) | 106, 371, 575, 596 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 85, 117 |
| AspS9I | GGNCC | 2 cut(s) | 492, 493 |
| AsuC2I | CCSGG | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 2 cut(s) | 326, 439 |
| AvaI | CYCGRG | 1 cut(s) | 327 |
| BaeGI | GKGCMC | 1 cut(s) | 496 |
| BanI | GGYRCC | 1 cut(s) | 250 |
| BanII | GRGCYC | 1 cut(s) | 496 |
| BauI | CACGAG | 1 cut(s) | 150 |
| BbsI | GAAGAC | 1 cut(s) | 32 |
| BbvI | GCAGC | 4 cut(s) | 118, 358, 583, 587 |
| BccI | CCATC | 5 cut(s) | 22, 407, 424, 482, 506 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 308, 342, 564, 598 |
| BcnI | CCSGG | 1 cut(s) | 200 |
| BcoDI | GTCTC | 1 cut(s) | 371 |
| BfaI | CTAG | 4 cut(s) | 86, 134, 333, 667 |
| BisI | GCNGC | 5 cut(s) | 107, 372, 420, 576, 597 |
| BlsI | GCNGC | 5 cut(s) | 108, 373, 421, 577, 598 |
| Bme1390I | CCNGG | 1 cut(s) | 200 |
| BmeT110I | CYCGRG | 1 cut(s) | 327 |
| BmgT120I | GGNCC | 2 cut(s) | 492, 493 |
| BmiI | GGNNCC | 3 cut(s) | 252, 493, 494 |
| BmrFI | CCNGG | 1 cut(s) | 200 |
| BmsI | GCATC | 2 cut(s) | 199, 220 |
| BpiI | GAAGAC | 1 cut(s) | 32 |
| BpuEI | CTTGAG | 1 cut(s) | 380 |
| BpuMI | CCSGG | 1 cut(s) | 200 |
| BsaBI | GATNNNNATC | 1 cut(s) | 438 |
| Bse1I | ACTGG | 2 cut(s) | 529, 591 |
| Bse8I | GATNNNNATC | 1 cut(s) | 438 |
| BseGI | GGATG | 3 cut(s) | 61, 145, 493 |
| BseJI | GATNNNNATC | 1 cut(s) | 438 |
| BseNI | ACTGG | 2 cut(s) | 529, 591 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 1 cut(s) | 496 |
| BseXI | GCAGC | 4 cut(s) | 118, 358, 583, 587 |
| Bsh1236I | CGCG | 2 cut(s) | 228, 555 |
| BshFI | GGCC | 2 cut(s) | 404, 494 |
| BshNI | GGYRCC | 1 cut(s) | 250 |
| BsiHKCI | CYCGRG | 1 cut(s) | 327 |
| BsiSI | CCGG | 1 cut(s) | 199 |
| BsmAI | GTCTC | 1 cut(s) | 371 |
| BsmBI | CGTCTC | 1 cut(s) | 371 |
| BsmI | GAATGC | 2 cut(s) | 209, 354 |
| BsnI | GGCC | 2 cut(s) | 404, 494 |
| BsoBI | CYCGRG | 1 cut(s) | 327 |
| Bsp120I | GGGCCC | 1 cut(s) | 492 |
| Bsp1286I | GDGCHC | 1 cut(s) | 496 |
| Bsp143I | GATC | 4 cut(s) | 262, 433, 504, 581 |
| Bsp68I | TCGCGA | 2 cut(s) | 228, 555 |
| BspACI | CCGC | 2 cut(s) | 369, 419 |
| BspANI | GGCC | 2 cut(s) | 404, 494 |
| BspFNI | CGCG | 2 cut(s) | 228, 555 |
| BspLI | GGNNCC | 3 cut(s) | 252, 493, 494 |
| BspPI | GGATC | 3 cut(s) | 257, 441, 499 |
| BspT107I | GGYRCC | 1 cut(s) | 250 |
| BsrI | ACTGG | 2 cut(s) | 529, 591 |
| BssMI | GATC | 4 cut(s) | 262, 433, 504, 581 |
| BssSI | CACGAG | 1 cut(s) | 150 |
| Bst2BI | CACGAG | 1 cut(s) | 150 |
| BstC8I | GCNNGC | 1 cut(s) | 111 |
| BstF5I | GGATG | 3 cut(s) | 61, 145, 493 |
| BstFNI | CGCG | 2 cut(s) | 228, 555 |
| BstKTI | GATC | 4 cut(s) | 265, 436, 507, 584 |
| BstMAI | GTCTC | 1 cut(s) | 371 |
| BstMBI | GATC | 4 cut(s) | 262, 433, 504, 581 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 292 |
| BstNSI | RCATGY | 2 cut(s) | 113, 659 |
| BstSCI | CCNGG | 1 cut(s) | 198 |
| BstSLI | GKGCMC | 1 cut(s) | 496 |
| BstUI | CGCG | 2 cut(s) | 228, 555 |
| BstV1I | GCAGC | 4 cut(s) | 118, 358, 583, 587 |
| BstV2I | GAAGAC | 1 cut(s) | 32 |
| BsuRI | GGCC | 2 cut(s) | 404, 494 |
| BtgZI | GCGATG | 2 cut(s) | 222, 243 |
| BtsCI | GGATG | 3 cut(s) | 61, 145, 493 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 598 |
| BtuMI | TCGCGA | 2 cut(s) | 228, 555 |
| Cac8I | GCNNGC | 1 cut(s) | 111 |
| CaiI | CAGNNNCTG | 2 cut(s) | 119, 644 |
| Cfr13I | GGNCC | 2 cut(s) | 492, 493 |
| CseI | GACGC | 1 cut(s) | 388 |
| Csp6I | GTAC | 1 cut(s) | 336 |
| CviAII | CATG | 3 cut(s) | 110, 509, 656 |
| CviQI | GTAC | 1 cut(s) | 336 |
| DpnI | GATC | 4 cut(s) | 264, 435, 506, 583 |
| DpnII | GATC | 4 cut(s) | 262, 433, 504, 581 |
| Eco24I | GRGCYC | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 1 cut(s) | 92 |
| Eco88I | CYCGRG | 1 cut(s) | 327 |
| EcoO109I | RGGNCCY | 2 cut(s) | 492, 493 |
| EcoT38I | GRGCYC | 1 cut(s) | 496 |
| Esp3I | CGTCTC | 1 cut(s) | 371 |
| FaeI | CATG | 3 cut(s) | 113, 512, 659 |
| FaiI | YATR | 5 cut(s) | 111, 510, 518, 560, 657 |
| FatI | CATG | 3 cut(s) | 109, 508, 655 |
| Fnu4HI | GCNGC | 5 cut(s) | 107, 372, 420, 576, 597 |
| FokI | GGATG | 3 cut(s) | 68, 152, 500 |
| FriOI | GRGCYC | 1 cut(s) | 496 |
| Fsp4HI | GCNGC | 5 cut(s) | 107, 372, 420, 576, 597 |
| FspBI | CTAG | 4 cut(s) | 86, 134, 333, 667 |
| GluI | GCNGC | 5 cut(s) | 107, 372, 420, 576, 597 |
| HaeIII | GGCC | 2 cut(s) | 404, 494 |
| HapII | CCGG | 1 cut(s) | 199 |
| HgaI | GACGC | 1 cut(s) | 388 |
| Hin1II | CATG | 3 cut(s) | 113, 512, 659 |
| HinfI | GANTC | 1 cut(s) | 325 |
| HpaII | CCGG | 1 cut(s) | 199 |
| HphI | GGTGA | 2 cut(s) | 326, 439 |
| Hpy188I | TCNGA | 3 cut(s) | 72, 454, 487 |
| Hpy188III | TCNNGA | 7 cut(s) | 44, 134, 227, 260, 397, 461, 554 |
| HpyAV | CCTTC | 2 cut(s) | 298, 394 |
| HpyCH4V | TGCA | 8 cut(s) | 106, 113, 178, 233, 354, 562, 599, 647 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 292 |
| Hsp92II | CATG | 3 cut(s) | 113, 512, 659 |
| Kzo9I | GATC | 4 cut(s) | 262, 433, 504, 581 |
| LmnI | GCTCC | 1 cut(s) | 292 |
| LpnPI | CCDG | 8 cut(s) | 104, 105, 212, 273, 510, 604, 636, 651 |
| Lsp1109I | GCAGC | 4 cut(s) | 118, 358, 583, 587 |
| LweI | GCATC | 2 cut(s) | 199, 220 |
| MaeI | CTAG | 4 cut(s) | 86, 134, 333, 667 |
| MaeIII | GTNAC | 1 cut(s) | 520 |
| MalI | GATC | 4 cut(s) | 264, 435, 506, 583 |
| MboI | GATC | 4 cut(s) | 262, 433, 504, 581 |
| MboII | GAAGA | 3 cut(s) | 32, 434, 580 |
| MhlI | GDGCHC | 1 cut(s) | 496 |
| MluCI | AATT | 2 cut(s) | 5, 100 |
| MlyI | GAGTC | 1 cut(s) | 319 |
| MmeI | TCCRAC | 4 cut(s) | 165, 198, 258, 509 |
| MspA1I | CMGCKG | 1 cut(s) | 371 |
| MspI | CCGG | 1 cut(s) | 199 |
| MspR9I | CCNGG | 1 cut(s) | 200 |
| Mva1269I | GAATGC | 2 cut(s) | 209, 354 |
| MvnI | CGCG | 2 cut(s) | 228, 555 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 292 |
| NciI | CCSGG | 1 cut(s) | 200 |
| NdeII | GATC | 4 cut(s) | 262, 433, 504, 581 |
| NlaIII | CATG | 3 cut(s) | 113, 512, 659 |
| NlaIV | GGNNCC | 3 cut(s) | 252, 493, 494 |
| NmeAIII | GCCGAG | 2 cut(s) | 238, 400 |
| NruI | TCGCGA | 2 cut(s) | 228, 555 |
| NspI | RCATGY | 2 cut(s) | 113, 659 |
| PaeI | GCATGC | 1 cut(s) | 113 |
| PaeR7I | CTCGAG | 1 cut(s) | 327 |
| PctI | GAATGC | 2 cut(s) | 209, 354 |
| PfoI | TCCNGGA | 1 cut(s) | 198 |
| PkrI | GCNGC | 5 cut(s) | 108, 373, 421, 577, 598 |
| PleI | GAGTC | 1 cut(s) | 319 |
| PpsI | GAGTC | 1 cut(s) | 319 |
| PspN4I | GGNNCC | 3 cut(s) | 252, 493, 494 |
| PspOMI | GGGCCC | 1 cut(s) | 492 |
| PspPI | GGNCC | 2 cut(s) | 492, 493 |
| PspXI | VCTCGAGB | 1 cut(s) | 327 |
| PstNI | CAGNNNCTG | 2 cut(s) | 119, 644 |
| RruI | TCGCGA | 2 cut(s) | 228, 555 |
| RsaI | GTAC | 1 cut(s) | 337 |
| RsaNI | GTAC | 1 cut(s) | 336 |
| SatI | GCNGC | 5 cut(s) | 107, 372, 420, 576, 597 |
| Sau3AI | GATC | 4 cut(s) | 262, 433, 504, 581 |
| Sau96I | GGNCC | 2 cut(s) | 492, 493 |
| SchI | GAGTC | 1 cut(s) | 319 |
| ScrFI | CCNGG | 1 cut(s) | 200 |
| SduI | GDGCHC | 1 cut(s) | 496 |
| SfaNI | GCATC | 2 cut(s) | 199, 220 |
| Sfr274I | CTCGAG | 1 cut(s) | 327 |
| SlaI | CTCGAG | 1 cut(s) | 327 |
| SmlI | CTYRAG | 2 cut(s) | 327, 395 |
| SmoI | CTYRAG | 2 cut(s) | 327, 395 |
| SphI | GCATGC | 1 cut(s) | 113 |
| Sse9I | AATT | 2 cut(s) | 5, 100 |
| SsiI | CCGC | 2 cut(s) | 369, 419 |
| SspMI | CTAG | 4 cut(s) | 86, 134, 333, 667 |
| StyD4I | CCNGG | 1 cut(s) | 198 |
| TaqI | TCGA | 5 cut(s) | 165, 328, 358, 503, 610 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 2 cut(s) | 5, 100 |
| TauI | GCSGC | 1 cut(s) | 422 |
| TscAI | CASTG | 2 cut(s) | 30, 598 |
| TseI | GCWGC | 4 cut(s) | 106, 371, 575, 596 |
| TspGWI | ACGGA | 1 cut(s) | 337 |
| TspRI | CASTG | 2 cut(s) | 30, 598 |
| XbaI | TCTAGA | 1 cut(s) | 133 |
| XceI | RCATGY | 2 cut(s) | 113, 659 |
| XhoI | CTCGAG | 1 cut(s) | 327 |
| XspI | CTAG | 4 cut(s) | 86, 134, 333, 667 |