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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 116 |
| AccII | CGCG | 5 cut(s) | 172, 210, 267, 423, 461 |
| AciI | CCGC | 7 cut(s) | 114, 239, 265, 289, 386, 437, 456 |
| AcvI | CACGTG | 1 cut(s) | 48 |
| AfaI | GTAC | 2 cut(s) | 58, 273 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 40, 232, 294, 295, 344 |
| AflIII | ACRYGT | 2 cut(s) | 45, 47 |
| AluBI | AGCT | 5 cut(s) | 96, 310, 359, 380, 427 |
| AluI | AGCT | 5 cut(s) | 96, 310, 359, 380, 427 |
| Alw21I | GWGCWC | 1 cut(s) | 421 |
| Alw26I | GTCTC | 3 cut(s) | 106, 155, 156 |
| Alw44I | GTGCAC | 1 cut(s) | 417 |
| Ama87I | CYCGRG | 3 cut(s) | 103, 153, 311 |
| AoxI | GGCC | 3 cut(s) | 86, 319, 448 |
| ApaLI | GTGCAC | 1 cut(s) | 417 |
| ApeKI | GCWGC | 1 cut(s) | 93 |
| AspLEI | GCGC | 3 cut(s) | 174, 269, 461 |
| AspS9I | GGNCC | 2 cut(s) | 241, 442 |
| AsuHPI | GGTGA | 1 cut(s) | 29 |
| AvaI | CYCGRG | 3 cut(s) | 103, 153, 311 |
| AvaII | GGWCC | 2 cut(s) | 241, 442 |
| BaeGI | GKGCMC | 1 cut(s) | 421 |
| BauI | CACGAG | 2 cut(s) | 117, 135 |
| BbrPI | CACGTG | 1 cut(s) | 48 |
| BbsI | GAAGAC | 1 cut(s) | 290 |
| Bbv12I | GWGCWC | 1 cut(s) | 421 |
| BbvI | GCAGC | 1 cut(s) | 105 |
| BccI | CCATC | 4 cut(s) | 8, 20, 56, 362 |
| BceAI | ACGGC | 5 cut(s) | 101, 206, 254, 306, 356 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 200, 234 |
| BcoDI | GTCTC | 3 cut(s) | 106, 155, 156 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 456 |
| BisI | GCNGC | 2 cut(s) | 94, 457 |
| BlsI | GCNGC | 2 cut(s) | 95, 458 |
| Bme18I | GGWCC | 2 cut(s) | 241, 442 |
| BmeT110I | CYCGRG | 3 cut(s) | 103, 153, 311 |
| BmgT120I | GGNCC | 2 cut(s) | 241, 442 |
| BmiI | GGNNCC | 3 cut(s) | 243, 251, 396 |
| BpiI | GAAGAC | 1 cut(s) | 290 |
| BpuEI | CTTGAG | 1 cut(s) | 160 |
| BsaAI | YACGTR | 1 cut(s) | 48 |
| BsaI | GGTCTC | 2 cut(s) | 155, 156 |
| BsaJI | CCNNGG | 3 cut(s) | 245, 338, 445 |
| BsaWI | WCCGGW | 2 cut(s) | 199, 397 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 40, 232, 294, 295, 344 |
| Bse118I | RCCGGY | 1 cut(s) | 450 |
| BseDI | CCNNGG | 3 cut(s) | 245, 338, 445 |
| BseGI | GGATG | 2 cut(s) | 31, 67 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 40, 232, 294, 295, 344 |
| BseSI | GKGCMC | 1 cut(s) | 421 |
| BseXI | GCAGC | 1 cut(s) | 105 |
| Bsh1236I | CGCG | 5 cut(s) | 172, 210, 267, 423, 461 |
| Bsh1285I | CGRYCG | 1 cut(s) | 386 |
| BshFI | GGCC | 3 cut(s) | 88, 321, 450 |
| BsiEI | CGRYCG | 1 cut(s) | 386 |
| BsiHKAI | GWGCWC | 1 cut(s) | 421 |
| BsiHKCI | CYCGRG | 3 cut(s) | 103, 153, 311 |
| BsiSI | CCGG | 3 cut(s) | 200, 398, 451 |
| BsiWI | CGTACG | 2 cut(s) | 56, 271 |
| BslFI | GGGAC | 2 cut(s) | 19, 95 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 40, 232, 294, 295, 344 |
| BsmAI | GTCTC | 3 cut(s) | 106, 155, 156 |
| BsmFI | GGGAC | 2 cut(s) | 19, 95 |
| BsnI | GGCC | 3 cut(s) | 88, 321, 450 |
| Bso31I | GGTCTC | 2 cut(s) | 155, 156 |
| BsoBI | CYCGRG | 3 cut(s) | 103, 153, 311 |
| Bsp1286I | GDGCHC | 1 cut(s) | 421 |
| Bsp68I | TCGCGA | 1 cut(s) | 210 |
| BspACI | CCGC | 7 cut(s) | 114, 239, 265, 289, 386, 437, 456 |
| BspANI | GGCC | 3 cut(s) | 88, 321, 450 |
| BspFNI | CGCG | 5 cut(s) | 172, 210, 267, 423, 461 |
| BspLI | GGNNCC | 3 cut(s) | 243, 251, 396 |
| BspTNI | GGTCTC | 2 cut(s) | 155, 156 |
| BsrBI | CCGCTC | 1 cut(s) | 116 |
| BsrFI | RCCGGY | 1 cut(s) | 450 |
| BssAI | RCCGGY | 1 cut(s) | 450 |
| BssECI | CCNNGG | 3 cut(s) | 245, 338, 445 |
| BssSI | CACGAG | 2 cut(s) | 117, 135 |
| BssT1I | CCWWGG | 1 cut(s) | 445 |
| Bst2BI | CACGAG | 2 cut(s) | 117, 135 |
| Bst4CI | ACNGT | 2 cut(s) | 166, 254 |
| BstBAI | YACGTR | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 3 cut(s) | 417, 421, 425 |
| BstDEI | CTNAG | 1 cut(s) | 97 |
| BstDSI | CCRYGG | 2 cut(s) | 245, 338 |
| BstF5I | GGATG | 2 cut(s) | 31, 67 |
| BstFNI | CGCG | 5 cut(s) | 172, 210, 267, 423, 461 |
| BstHHI | GCGC | 3 cut(s) | 174, 269, 461 |
| BstMAI | GTCTC | 3 cut(s) | 106, 155, 156 |
| BstMCI | CGRYCG | 1 cut(s) | 386 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 456 |
| BstSLI | GKGCMC | 1 cut(s) | 421 |
| BstUI | CGCG | 5 cut(s) | 172, 210, 267, 423, 461 |
| BstV1I | GCAGC | 1 cut(s) | 105 |
| BstV2I | GAAGAC | 1 cut(s) | 290 |
| BsuRI | GGCC | 3 cut(s) | 88, 321, 450 |
| BtgI | CCRYGG | 2 cut(s) | 245, 338 |
| BtgZI | GCGATG | 1 cut(s) | 225 |
| BtsCI | GGATG | 2 cut(s) | 31, 67 |
| BtuMI | TCGCGA | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 3 cut(s) | 417, 421, 425 |
| CfoI | GCGC | 3 cut(s) | 174, 269, 461 |
| Cfr10I | RCCGGY | 1 cut(s) | 450 |
| Cfr13I | GGNCC | 2 cut(s) | 241, 442 |
| Csp6I | GTAC | 2 cut(s) | 57, 272 |
| CviAII | CATG | 1 cut(s) | 11 |
| CviQI | GTAC | 2 cut(s) | 57, 272 |
| DdeI | CTNAG | 1 cut(s) | 97 |
| Eco130I | CCWWGG | 1 cut(s) | 445 |
| Eco31I | GGTCTC | 2 cut(s) | 155, 156 |
| Eco47I | GGWCC | 2 cut(s) | 241, 442 |
| Eco72I | CACGTG | 1 cut(s) | 48 |
| Eco88I | CYCGRG | 3 cut(s) | 103, 153, 311 |
| EcoT14I | CCWWGG | 1 cut(s) | 445 |
| ErhI | CCWWGG | 1 cut(s) | 445 |
| FaeI | CATG | 1 cut(s) | 14 |
| FaiI | YATR | 5 cut(s) | 12, 231, 233, 432, 469 |
| FaqI | GGGAC | 2 cut(s) | 19, 95 |
| FatI | CATG | 1 cut(s) | 10 |
| FauI | CCCGC | 2 cut(s) | 121, 296 |
| FauNDI | CATATG | 1 cut(s) | 231 |
| Fnu4HI | GCNGC | 2 cut(s) | 94, 457 |
| FokI | GGATG | 2 cut(s) | 38, 74 |
| Fsp4HI | GCNGC | 2 cut(s) | 94, 457 |
| GlaI | GCGC | 3 cut(s) | 173, 268, 460 |
| GluI | GCNGC | 2 cut(s) | 94, 457 |
| HaeIII | GGCC | 3 cut(s) | 88, 321, 450 |
| HapII | CCGG | 3 cut(s) | 200, 398, 451 |
| HhaI | GCGC | 3 cut(s) | 174, 269, 461 |
| Hin1II | CATG | 1 cut(s) | 14 |
| Hin6I | GCGC | 3 cut(s) | 172, 267, 459 |
| HinP1I | GCGC | 3 cut(s) | 172, 267, 459 |
| HinfI | GANTC | 3 cut(s) | 30, 108, 203 |
| HpaII | CCGG | 3 cut(s) | 200, 398, 451 |
| HphI | GGTGA | 1 cut(s) | 29 |
| Hpy166II | GTNNAC | 5 cut(s) | 183, 197, 326, 419, 442 |
| Hpy188I | TCNGA | 2 cut(s) | 35, 43 |
| Hpy188III | TCNNGA | 4 cut(s) | 105, 209, 304, 313 |
| Hpy8I | GTNNAC | 5 cut(s) | 183, 197, 326, 419, 442 |
| HpyAV | CCTTC | 1 cut(s) | 236 |
| HpyCH4III | ACNGT | 2 cut(s) | 166, 254 |
| HpyCH4IV | ACGT | 1 cut(s) | 47 |
| HpyCH4V | TGCA | 1 cut(s) | 419 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 456 |
| HpyF3I | CTNAG | 1 cut(s) | 97 |
| HpySE526I | ACGT | 1 cut(s) | 47 |
| Hsp92II | CATG | 1 cut(s) | 14 |
| HspAI | GCGC | 3 cut(s) | 172, 267, 459 |
| LmnI | GCTCC | 1 cut(s) | 412 |
| LpnPI | CCDG | 3 cut(s) | 213, 411, 464 |
| Lsp1109I | GCAGC | 1 cut(s) | 105 |
| MaeII | ACGT | 1 cut(s) | 47 |
| MbiI | CCGCTC | 1 cut(s) | 116 |
| MboII | GAAGA | 2 cut(s) | 87, 295 |
| MhlI | GDGCHC | 1 cut(s) | 421 |
| MluCI | AATT | 1 cut(s) | 332 |
| MlyI | GAGTC | 2 cut(s) | 39, 117 |
| MmeI | TCCRAC | 1 cut(s) | 21 |
| MnlI | CCTC | 5 cut(s) | 99, 141, 208, 402, 456 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 366 |
| MspI | CCGG | 3 cut(s) | 200, 398, 451 |
| MvnI | CGCG | 5 cut(s) | 172, 210, 267, 423, 461 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 456 |
| NdeI | CATATG | 1 cut(s) | 231 |
| NlaIII | CATG | 1 cut(s) | 14 |
| NlaIV | GGNNCC | 3 cut(s) | 243, 251, 396 |
| NmeAIII | GCCGAG | 1 cut(s) | 324 |
| NruI | TCGCGA | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 203 |
| Pfl23II | CGTACG | 2 cut(s) | 56, 271 |
| PflFI | GACNNNGTC | 1 cut(s) | 166 |
| PkrI | GCNGC | 2 cut(s) | 95, 458 |
| PleI | GAGTC | 2 cut(s) | 38, 116 |
| PmaCI | CACGTG | 1 cut(s) | 48 |
| PmlI | CACGTG | 1 cut(s) | 48 |
| PpsI | GAGTC | 2 cut(s) | 38, 116 |
| Ppu21I | YACGTR | 1 cut(s) | 48 |
| PspCI | CACGTG | 1 cut(s) | 48 |
| PspLI | CGTACG | 2 cut(s) | 56, 271 |
| PspN4I | GGNNCC | 3 cut(s) | 243, 251, 396 |
| PspPI | GGNCC | 2 cut(s) | 241, 442 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 318, 350 |
| PsyI | GACNNNGTC | 1 cut(s) | 166 |
| RruI | TCGCGA | 1 cut(s) | 210 |
| RsaI | GTAC | 2 cut(s) | 58, 273 |
| RsaNI | GTAC | 2 cut(s) | 57, 272 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 366 |
| SatI | GCNGC | 2 cut(s) | 94, 457 |
| Sau96I | GGNCC | 2 cut(s) | 241, 442 |
| SchI | GAGTC | 2 cut(s) | 39, 117 |
| SduI | GDGCHC | 1 cut(s) | 421 |
| SetI | ASST | 9 cut(s) | 50, 98, 152, 182, 219, 312, 361, 382, 429 |
| SinI | GGWCC | 2 cut(s) | 241, 442 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 366 |
| SmlI | CTYRAG | 1 cut(s) | 175 |
| SmoI | CTYRAG | 1 cut(s) | 175 |
| Sse9I | AATT | 1 cut(s) | 332 |
| SsiI | CCGC | 7 cut(s) | 114, 239, 265, 289, 386, 437, 456 |
| StyI | CCWWGG | 1 cut(s) | 445 |
| TaaI | ACNGT | 2 cut(s) | 166, 254 |
| TaiI | ACGT | 1 cut(s) | 50 |
| TaqI | TCGA | 2 cut(s) | 129, 382 |
| TasI | AATT | 1 cut(s) | 332 |
| TauI | GCSGC | 1 cut(s) | 459 |
| TfiI | GAWTC | 1 cut(s) | 203 |
| TseI | GCWGC | 1 cut(s) | 93 |
| TspDTI | ATGAA | 2 cut(s) | 218, 419 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| Tth111I | GACNNNGTC | 1 cut(s) | 166 |
| VneI | GTGCAC | 1 cut(s) | 417 |
| VpaK11BI | GGWCC | 2 cut(s) | 241, 442 |