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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 360 |
| AccII | CGCG | 3 cut(s) | 32, 120, 578 |
| AciI | CCGC | 4 cut(s) | 120, 148, 286, 578 |
| AclWI | GGATC | 3 cut(s) | 123, 173, 600 |
| AcoI | YGGCCR | 1 cut(s) | 121 |
| AcsI | RAATTY | 1 cut(s) | 259 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfeI | AGCGCT | 1 cut(s) | 496 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 249, 250 |
| AgsI | TTSAA | 1 cut(s) | 41 |
| AleI | CACNNNNGTG | 1 cut(s) | 340 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 356, 388 |
| AluBI | AGCT | 5 cut(s) | 70, 100, 428, 448, 553 |
| AluI | AGCT | 5 cut(s) | 70, 100, 428, 448, 553 |
| Alw26I | GTCTC | 2 cut(s) | 216, 530 |
| AlwI | GGATC | 3 cut(s) | 123, 173, 600 |
| Ama87I | CYCGRG | 2 cut(s) | 326, 486 |
| Aor51HI | AGCGCT | 1 cut(s) | 496 |
| AoxI | GGCC | 5 cut(s) | 121, 225, 323, 636, 651 |
| ApaI | GGGCCC | 1 cut(s) | 327 |
| ApeKI | GCWGC | 1 cut(s) | 283 |
| ApoI | RAATTY | 1 cut(s) | 259 |
| AsiSI | GCGATCGC | 1 cut(s) | 194 |
| AspLEI | GCGC | 3 cut(s) | 34, 497, 578 |
| AspS9I | GGNCC | 4 cut(s) | 323, 324, 372, 651 |
| AsuHPI | GGTGA | 1 cut(s) | 395 |
| AvaI | CYCGRG | 2 cut(s) | 326, 486 |
| AvaII | GGWCC | 1 cut(s) | 372 |
| AxyI | CCTNAGG | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 327 |
| BanII | GRGCYC | 1 cut(s) | 327 |
| BbvI | GCAGC | 1 cut(s) | 295 |
| BccI | CCATC | 2 cut(s) | 566, 641 |
| BceAI | ACGGC | 1 cut(s) | 382 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 262, 296 |
| BciVI | GTATCC | 1 cut(s) | 433 |
| BclI | TGATCA | 1 cut(s) | 400 |
| BcoDI | GTCTC | 2 cut(s) | 216, 530 |
| BfaI | CTAG | 1 cut(s) | 661 |
| BfmI | CTRYAG | 1 cut(s) | 59 |
| BfoI | RGCGCY | 1 cut(s) | 498 |
| BfuAI | ACCTGC | 1 cut(s) | 360 |
| BfuI | GTATCC | 1 cut(s) | 433 |
| BisI | GCNGC | 3 cut(s) | 121, 284, 579 |
| BlsI | GCNGC | 3 cut(s) | 122, 285, 580 |
| Bme18I | GGWCC | 1 cut(s) | 372 |
| BmeT110I | CYCGRG | 2 cut(s) | 326, 486 |
| BmgT120I | GGNCC | 4 cut(s) | 323, 324, 372, 651 |
| BmiI | GGNNCC | 2 cut(s) | 325, 652 |
| BpuEI | CTTGAG | 2 cut(s) | 268, 470 |
| BsaJI | CCNNGG | 2 cut(s) | 228, 309 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 249, 250 |
| Bse21I | CCTNAGG | 1 cut(s) | 407 |
| BseDI | CCNNGG | 2 cut(s) | 228, 309 |
| BseGI | GGATG | 3 cut(s) | 183, 238, 652 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 249, 250 |
| BseMII | CTCAG | 1 cut(s) | 398 |
| BseRI | GAGGAG | 2 cut(s) | 152, 491 |
| BseSI | GKGCMC | 1 cut(s) | 327 |
| BseXI | GCAGC | 1 cut(s) | 295 |
| Bsh1236I | CGCG | 3 cut(s) | 32, 120, 578 |
| Bsh1285I | CGRYCG | 1 cut(s) | 194 |
| BshFI | GGCC | 5 cut(s) | 123, 227, 325, 638, 653 |
| BsiEI | CGRYCG | 1 cut(s) | 194 |
| BsiHKCI | CYCGRG | 2 cut(s) | 326, 486 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 249, 250 |
| BsmAI | GTCTC | 2 cut(s) | 216, 530 |
| BsmBI | CGTCTC | 1 cut(s) | 530 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BsnI | GGCC | 5 cut(s) | 123, 227, 325, 638, 653 |
| BsoBI | CYCGRG | 2 cut(s) | 326, 486 |
| Bsp120I | GGGCCC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 327 |
| Bsp143I | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| BspACI | CCGC | 4 cut(s) | 120, 148, 286, 578 |
| BspANI | GGCC | 5 cut(s) | 123, 227, 325, 638, 653 |
| BspCNI | CTCAG | 1 cut(s) | 399 |
| BspFNI | CGCG | 3 cut(s) | 32, 120, 578 |
| BspLI | GGNNCC | 2 cut(s) | 325, 652 |
| BspMAI | CTGCAG | 1 cut(s) | 63 |
| BspMI | ACCTGC | 1 cut(s) | 360 |
| BspPI | GGATC | 3 cut(s) | 123, 173, 600 |
| BssECI | CCNNGG | 2 cut(s) | 228, 309 |
| BssMI | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst4CI | ACNGT | 1 cut(s) | 350 |
| BstC8I | GCNNGC | 5 cut(s) | 150, 198, 288, 430, 493 |
| BstDEI | CTNAG | 1 cut(s) | 407 |
| BstF5I | GGATG | 3 cut(s) | 183, 238, 652 |
| BstFNI | CGCG | 3 cut(s) | 32, 120, 578 |
| BstH2I | RGCGCY | 1 cut(s) | 498 |
| BstHHI | GCGC | 3 cut(s) | 34, 497, 578 |
| BstKTI | GATC | 7 cut(s) | 51, 118, 168, 194, 381, 403, 595 |
| BstMAI | GTCTC | 2 cut(s) | 216, 530 |
| BstMBI | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| BstMCI | CGRYCG | 1 cut(s) | 194 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 67, 322, 584 |
| BstNSI | RCATGY | 2 cut(s) | 96, 545 |
| BstSFI | CTRYAG | 1 cut(s) | 59 |
| BstSLI | GKGCMC | 1 cut(s) | 327 |
| BstUI | CGCG | 3 cut(s) | 32, 120, 578 |
| BstV1I | GCAGC | 1 cut(s) | 295 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 25 |
| Bsu36I | CCTNAGG | 1 cut(s) | 407 |
| BsuI | GTATCC | 1 cut(s) | 433 |
| BsuRI | GGCC | 5 cut(s) | 123, 227, 325, 638, 653 |
| BtsCI | GGATG | 3 cut(s) | 183, 238, 652 |
| BtsI | GCAGTG | 2 cut(s) | 207, 335 |
| BtsIMutI | CAGTG | 2 cut(s) | 207, 335 |
| BveI | ACCTGC | 1 cut(s) | 360 |
| Cac8I | GCNNGC | 5 cut(s) | 150, 198, 288, 430, 493 |
| CfoI | GCGC | 3 cut(s) | 34, 497, 578 |
| Cfr13I | GGNCC | 4 cut(s) | 323, 324, 372, 651 |
| CseI | GACGC | 1 cut(s) | 547 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 570, 605 |
| CviAII | CATG | 2 cut(s) | 93, 542 |
| DdeI | CTNAG | 1 cut(s) | 407 |
| DpnI | GATC | 7 cut(s) | 50, 117, 167, 193, 380, 402, 594 |
| DpnII | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| EaeI | YGGCCR | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco147I | AGGCCT | 1 cut(s) | 638 |
| Eco24I | GRGCYC | 1 cut(s) | 327 |
| Eco47I | GGWCC | 1 cut(s) | 372 |
| Eco47III | AGCGCT | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| Eco81I | CCTNAGG | 1 cut(s) | 407 |
| Eco88I | CYCGRG | 2 cut(s) | 326, 486 |
| EcoO109I | RGGNCCY | 2 cut(s) | 323, 651 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| EcoT38I | GRGCYC | 1 cut(s) | 327 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| Esp3I | CGTCTC | 1 cut(s) | 530 |
| FaeI | CATG | 2 cut(s) | 96, 545 |
| FaiI | YATR | 2 cut(s) | 94, 543 |
| FatI | CATG | 2 cut(s) | 92, 541 |
| FauI | CCCGC | 2 cut(s) | 141, 279 |
| FbaI | TGATCA | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 3 cut(s) | 121, 284, 579 |
| FokI | GGATG | 3 cut(s) | 190, 245, 659 |
| FriOI | GRGCYC | 1 cut(s) | 327 |
| Fsp4HI | GCNGC | 3 cut(s) | 121, 284, 579 |
| FspBI | CTAG | 1 cut(s) | 661 |
| GlaI | GCGC | 3 cut(s) | 33, 496, 577 |
| GluI | GCNGC | 3 cut(s) | 121, 284, 579 |
| HaeII | RGCGCY | 1 cut(s) | 498 |
| HaeIII | GGCC | 5 cut(s) | 123, 227, 325, 638, 653 |
| HgaI | GACGC | 1 cut(s) | 547 |
| HhaI | GCGC | 3 cut(s) | 34, 497, 578 |
| Hin1II | CATG | 2 cut(s) | 96, 545 |
| Hin6I | GCGC | 3 cut(s) | 32, 495, 576 |
| HinP1I | GCGC | 3 cut(s) | 32, 495, 576 |
| HincII | GTYRAC | 1 cut(s) | 547 |
| HindII | GTYRAC | 1 cut(s) | 547 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 1 cut(s) | 254 |
| HphI | GGTGA | 1 cut(s) | 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 547 |
| Hpy188I | TCNGA | 2 cut(s) | 303, 646 |
| Hpy188III | TCNNGA | 4 cut(s) | 169, 247, 382, 535 |
| Hpy8I | GTNNAC | 1 cut(s) | 547 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 219 |
| HpyAV | CCTTC | 2 cut(s) | 168, 649 |
| HpyCH4III | ACNGT | 1 cut(s) | 350 |
| HpyCH4V | TGCA | 5 cut(s) | 61, 200, 283, 354, 658 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 67, 322, 584 |
| HpyF3I | CTNAG | 1 cut(s) | 407 |
| Hsp92II | CATG | 2 cut(s) | 96, 545 |
| HspAI | GCGC | 3 cut(s) | 32, 495, 576 |
| Ksp22I | TGATCA | 1 cut(s) | 400 |
| Kzo9I | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| LmnI | GCTCC | 5 cut(s) | 67, 187, 313, 478, 558 |
| LpnPI | CCDG | 4 cut(s) | 47, 355, 414, 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 295 |
| MaeI | CTAG | 1 cut(s) | 661 |
| MalI | GATC | 7 cut(s) | 50, 117, 167, 193, 380, 402, 594 |
| MboI | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| MboII | GAAGA | 2 cut(s) | 600, 637 |
| MfeI | CAATTG | 1 cut(s) | 455 |
| MhlI | GDGCHC | 1 cut(s) | 327 |
| MluCI | AATT | 4 cut(s) | 182, 259, 455, 613 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MmeI | TCCRAC | 2 cut(s) | 93, 341 |
| MslI | CAYNNNNRTG | 1 cut(s) | 340 |
| MspA1I | CMGCKG | 1 cut(s) | 286 |
| MunI | CAATTG | 1 cut(s) | 455 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| MvnI | CGCG | 3 cut(s) | 32, 120, 578 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 67, 322, 584 |
| NdeII | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| NlaIII | CATG | 2 cut(s) | 96, 545 |
| NlaIV | GGNNCC | 2 cut(s) | 325, 652 |
| NmeAIII | GCCGAG | 1 cut(s) | 253 |
| NspI | RCATGY | 2 cut(s) | 96, 545 |
| OliI | CACNNNNGTG | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 638 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 165 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PkrI | GCNGC | 3 cut(s) | 122, 285, 580 |
| Ple19I | CGATCG | 1 cut(s) | 194 |
| PleI | GAGTC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 262 |
| PspN4I | GGNNCC | 2 cut(s) | 325, 652 |
| PspOMI | GGGCCC | 1 cut(s) | 323 |
| PspPI | GGNCC | 4 cut(s) | 323, 324, 372, 651 |
| PstI | CTGCAG | 1 cut(s) | 63 |
| PvuI | CGATCG | 1 cut(s) | 194 |
| RgaI | GCGATCGC | 1 cut(s) | 194 |
| RseI | CAYNNNNRTG | 1 cut(s) | 340 |
| SatI | GCNGC | 3 cut(s) | 121, 284, 579 |
| Sau3AI | GATC | 7 cut(s) | 48, 115, 165, 191, 378, 400, 592 |
| Sau96I | GGNCC | 4 cut(s) | 323, 324, 372, 651 |
| SchI | GAGTC | 1 cut(s) | 263 |
| SduI | GDGCHC | 1 cut(s) | 327 |
| SetI | ASST | 8 cut(s) | 72, 102, 109, 374, 408, 430, 450, 555 |
| SfaAI | GCGATCGC | 1 cut(s) | 194 |
| SfcI | CTRYAG | 1 cut(s) | 59 |
| SgfI | GCGATCGC | 1 cut(s) | 194 |
| SinI | GGWCC | 1 cut(s) | 372 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 340 |
| SmlI | CTYRAG | 2 cut(s) | 247, 449 |
| SmoI | CTYRAG | 2 cut(s) | 247, 449 |
| Sse9I | AATT | 4 cut(s) | 182, 259, 455, 613 |
| SseBI | AGGCCT | 1 cut(s) | 638 |
| SsiI | CCGC | 4 cut(s) | 120, 148, 286, 578 |
| SspMI | CTAG | 1 cut(s) | 661 |
| StuI | AGGCCT | 1 cut(s) | 638 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaaI | ACNGT | 1 cut(s) | 350 |
| TaqI | TCGA | 6 cut(s) | 55, 103, 168, 389, 417, 534 |
| TasI | AATT | 4 cut(s) | 182, 259, 455, 613 |
| TauI | GCSGC | 2 cut(s) | 123, 581 |
| TscAI | CASTG | 2 cut(s) | 207, 342 |
| TseI | GCWGC | 1 cut(s) | 283 |
| TspDTI | ATGAA | 2 cut(s) | 17, 194 |
| TspRI | CASTG | 2 cut(s) | 207, 342 |
| VpaK11BI | GGWCC | 1 cut(s) | 372 |
| XapI | RAATTY | 1 cut(s) | 259 |
| XceI | RCATGY | 2 cut(s) | 96, 545 |
| XspI | CTAG | 1 cut(s) | 661 |