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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 100, 184 |
| AccII | CGCG | 2 cut(s) | 531, 552 |
| AciI | CCGC | 2 cut(s) | 404, 529 |
| AclWI | GGATC | 2 cut(s) | 417, 475 |
| AfaI | GTAC | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 649 |
| AgeI | ACCGGT | 1 cut(s) | 95 |
| AgsI | TTSAA | 2 cut(s) | 364, 437 |
| AjiI | CACGTC | 1 cut(s) | 38 |
| AjnI | CCWGG | 1 cut(s) | 537 |
| AluBI | AGCT | 6 cut(s) | 103, 184, 223, 370, 566, 613 |
| AluI | AGCT | 6 cut(s) | 103, 184, 223, 370, 566, 613 |
| Alw26I | GTCTC | 3 cut(s) | 70, 633, 671 |
| AlwI | GGATC | 2 cut(s) | 417, 475 |
| AoxI | GGCC | 4 cut(s) | 129, 378, 453, 468 |
| ApaI | GGGCCC | 1 cut(s) | 472 |
| ApeKI | GCWGC | 2 cut(s) | 497, 613 |
| AsiGI | ACCGGT | 1 cut(s) | 95 |
| AspLEI | GCGC | 4 cut(s) | 174, 207, 357, 552 |
| AspS9I | GGNCC | 5 cut(s) | 88, 196, 468, 469, 526 |
| AsuHPI | GGTGA | 2 cut(s) | 295, 587 |
| AvaII | GGWCC | 3 cut(s) | 88, 196, 526 |
| BaeGI | GKGCMC | 1 cut(s) | 472 |
| BanII | GRGCYC | 1 cut(s) | 472 |
| BbvI | GCAGC | 2 cut(s) | 484, 600 |
| BccI | CCATC | 3 cut(s) | 383, 458, 498 |
| BceAI | ACGGC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 1 cut(s) | 539 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcoDI | GTCTC | 3 cut(s) | 70, 633, 671 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BfmI | CTRYAG | 2 cut(s) | 104, 614 |
| BfoI | RGCGCY | 1 cut(s) | 175 |
| BfuAI | ACCTGC | 2 cut(s) | 100, 184 |
| BisI | GCNGC | 2 cut(s) | 498, 614 |
| BlsI | GCNGC | 2 cut(s) | 499, 615 |
| Bme1390I | CCNGG | 1 cut(s) | 539 |
| Bme18I | GGWCC | 3 cut(s) | 88, 196, 526 |
| BmgBI | CACGTC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 5 cut(s) | 88, 196, 468, 469, 526 |
| BmiI | GGNNCC | 3 cut(s) | 252, 469, 470 |
| BmrFI | CCNGG | 1 cut(s) | 539 |
| BmsI | GCATC | 1 cut(s) | 589 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 235, 267 |
| BpuEI | CTTGAG | 1 cut(s) | 356 |
| BsaAI | YACGTR | 1 cut(s) | 340 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 4 cut(s) | 24, 350, 603, 669 |
| BsaWI | WCCGGW | 1 cut(s) | 95 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 644, 674 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 649 |
| Bse118I | RCCGGY | 1 cut(s) | 95 |
| Bse3DI | GCAATG | 2 cut(s) | 214, 663 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseBI | CCWGG | 1 cut(s) | 539 |
| BseDI | CCNNGG | 4 cut(s) | 24, 350, 603, 669 |
| BseGI | GGATG | 6 cut(s) | 61, 425, 469, 509, 604, 679 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 649 |
| BseMI | GCAATG | 2 cut(s) | 214, 663 |
| BseMII | CTCAG | 2 cut(s) | 156, 164 |
| BseRI | GAGGAG | 3 cut(s) | 44, 152, 182 |
| BseSI | GKGCMC | 1 cut(s) | 472 |
| BseXI | GCAGC | 2 cut(s) | 484, 600 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| Bsh1236I | CGCG | 2 cut(s) | 531, 552 |
| BshFI | GGCC | 4 cut(s) | 131, 380, 455, 470 |
| BshTI | ACCGGT | 1 cut(s) | 95 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 649 |
| BsmAI | GTCTC | 3 cut(s) | 70, 633, 671 |
| BsmI | GAATGC | 1 cut(s) | 329 |
| BsnI | GGCC | 4 cut(s) | 131, 380, 455, 470 |
| Bso31I | GGTCTC | 1 cut(s) | 633 |
| Bsp120I | GGGCCC | 1 cut(s) | 468 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp143I | GATC | 4 cut(s) | 262, 409, 480, 511 |
| BspACI | CCGC | 2 cut(s) | 404, 529 |
| BspANI | GGCC | 4 cut(s) | 131, 380, 455, 470 |
| BspCNI | CTCAG | 2 cut(s) | 157, 163 |
| BspFNI | CGCG | 2 cut(s) | 531, 552 |
| BspHI | TCATGA | 1 cut(s) | 144 |
| BspLI | GGNNCC | 3 cut(s) | 252, 469, 470 |
| BspMAI | CTGCAG | 1 cut(s) | 618 |
| BspMI | ACCTGC | 2 cut(s) | 100, 184 |
| BspPI | GGATC | 2 cut(s) | 417, 475 |
| BspTNI | GGTCTC | 1 cut(s) | 633 |
| BsrDI | GCAATG | 2 cut(s) | 214, 663 |
| BsrFI | RCCGGY | 1 cut(s) | 95 |
| BssAI | RCCGGY | 1 cut(s) | 95 |
| BssECI | CCNNGG | 4 cut(s) | 24, 350, 603, 669 |
| BssMI | GATC | 4 cut(s) | 262, 409, 480, 511 |
| Bst2UI | CCWGG | 1 cut(s) | 539 |
| BstBAI | YACGTR | 1 cut(s) | 340 |
| BstC8I | GCNNGC | 6 cut(s) | 21, 176, 544, 548, 657, 661 |
| BstDEI | CTNAG | 3 cut(s) | 71, 150, 165 |
| BstDSI | CCRYGG | 1 cut(s) | 24 |
| BstF5I | GGATG | 6 cut(s) | 61, 425, 469, 509, 604, 679 |
| BstFNI | CGCG | 2 cut(s) | 531, 552 |
| BstH2I | RGCGCY | 1 cut(s) | 175 |
| BstHHI | GCGC | 4 cut(s) | 174, 207, 357, 552 |
| BstKTI | GATC | 4 cut(s) | 265, 412, 483, 514 |
| BstMAI | GTCTC | 3 cut(s) | 70, 633, 671 |
| BstMBI | GATC | 4 cut(s) | 262, 409, 480, 511 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 190, 665 |
| BstNI | CCWGG | 1 cut(s) | 539 |
| BstSCI | CCNGG | 1 cut(s) | 537 |
| BstSFI | CTRYAG | 2 cut(s) | 104, 614 |
| BstSLI | GKGCMC | 1 cut(s) | 472 |
| BstUI | CGCG | 2 cut(s) | 531, 552 |
| BstV1I | GCAGC | 2 cut(s) | 484, 600 |
| BsuRI | GGCC | 4 cut(s) | 131, 380, 455, 470 |
| BtgI | CCRYGG | 1 cut(s) | 24 |
| BtrI | CACGTC | 1 cut(s) | 38 |
| BtsCI | GGATG | 6 cut(s) | 61, 425, 469, 509, 604, 679 |
| BtsI | GCAGTG | 1 cut(s) | 344 |
| BtsIMutI | CAGTG | 1 cut(s) | 344 |
| BveI | ACCTGC | 2 cut(s) | 100, 184 |
| Cac8I | GCNNGC | 6 cut(s) | 21, 176, 544, 548, 657, 661 |
| CciI | TCATGA | 1 cut(s) | 144 |
| CfoI | GCGC | 4 cut(s) | 174, 207, 357, 552 |
| Cfr10I | RCCGGY | 1 cut(s) | 95 |
| Cfr13I | GGNCC | 5 cut(s) | 88, 196, 468, 469, 526 |
| Csp6I | GTAC | 1 cut(s) | 294 |
| CspAI | ACCGGT | 1 cut(s) | 95 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 387, 422 |
| CviAII | CATG | 2 cut(s) | 145, 595 |
| CviQI | GTAC | 1 cut(s) | 294 |
| DdeI | CTNAG | 3 cut(s) | 71, 150, 165 |
| DpnI | GATC | 4 cut(s) | 264, 411, 482, 513 |
| DpnII | GATC | 4 cut(s) | 262, 409, 480, 511 |
| DraI | TTTAAA | 1 cut(s) | 126 |
| Eco147I | AGGCCT | 2 cut(s) | 131, 455 |
| Eco24I | GRGCYC | 1 cut(s) | 472 |
| Eco31I | GGTCTC | 1 cut(s) | 633 |
| Eco32I | GATATC | 1 cut(s) | 535 |
| Eco47I | GGWCC | 3 cut(s) | 88, 196, 526 |
| EcoO109I | RGGNCCY | 2 cut(s) | 468, 469 |
| EcoRII | CCWGG | 1 cut(s) | 537 |
| EcoRV | GATATC | 1 cut(s) | 535 |
| EcoT38I | GRGCYC | 1 cut(s) | 472 |
| FaeI | CATG | 2 cut(s) | 148, 598 |
| FaiI | YATR | 3 cut(s) | 146, 596, 682 |
| FatI | CATG | 2 cut(s) | 144, 594 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| Fnu4HI | GCNGC | 2 cut(s) | 498, 614 |
| FokI | GGATG | 5 cut(s) | 68, 412, 476, 516, 611 |
| FriOI | GRGCYC | 1 cut(s) | 472 |
| Fsp4HI | GCNGC | 2 cut(s) | 498, 614 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GlaI | GCGC | 4 cut(s) | 173, 206, 356, 551 |
| GluI | GCNGC | 2 cut(s) | 498, 614 |
| HaeII | RGCGCY | 1 cut(s) | 175 |
| HaeIII | GGCC | 4 cut(s) | 131, 380, 455, 470 |
| HapII | CCGG | 1 cut(s) | 96 |
| HhaI | GCGC | 4 cut(s) | 174, 207, 357, 552 |
| Hin1II | CATG | 2 cut(s) | 148, 598 |
| Hin6I | GCGC | 4 cut(s) | 172, 205, 355, 550 |
| HinP1I | GCGC | 4 cut(s) | 172, 205, 355, 550 |
| HinfI | GANTC | 3 cut(s) | 32, 77, 148 |
| HpaII | CCGG | 1 cut(s) | 96 |
| HphI | GGTGA | 2 cut(s) | 295, 587 |
| Hpy166II | GTNNAC | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 1 cut(s) | 463 |
| Hpy188III | TCNNGA | 7 cut(s) | 44, 86, 145, 260, 373, 437, 515 |
| Hpy8I | GTNNAC | 1 cut(s) | 199 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 4 cut(s) | 142, 280, 370, 466 |
| HpyCH4IV | ACGT | 2 cut(s) | 37, 339 |
| HpyCH4V | TGCA | 8 cut(s) | 178, 231, 301, 329, 475, 592, 616, 663 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 190, 665 |
| HpyF3I | CTNAG | 3 cut(s) | 71, 150, 165 |
| HpySE526I | ACGT | 2 cut(s) | 37, 339 |
| Hsp92II | CATG | 2 cut(s) | 148, 598 |
| HspAI | GCGC | 4 cut(s) | 172, 205, 355, 550 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| Kzo9I | GATC | 4 cut(s) | 262, 409, 480, 511 |
| LmnI | GCTCC | 5 cut(s) | 169, 220, 256, 634, 652 |
| Lsp1109I | GCAGC | 2 cut(s) | 484, 600 |
| LweI | GCATC | 1 cut(s) | 589 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MaeII | ACGT | 2 cut(s) | 37, 339 |
| MaeIII | GTNAC | 1 cut(s) | 33 |
| MalI | GATC | 4 cut(s) | 264, 411, 482, 513 |
| MboI | GATC | 4 cut(s) | 262, 409, 480, 511 |
| MboII | GAAGA | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| MluCI | AATT | 2 cut(s) | 5, 275 |
| MlyI | GAGTC | 3 cut(s) | 41, 86, 142 |
| MmeI | TCCRAC | 1 cut(s) | 453 |
| MseI | TTAA | 1 cut(s) | 125 |
| MslI | CAYNNNNRTG | 1 cut(s) | 597 |
| MspI | CCGG | 1 cut(s) | 96 |
| MspR9I | CCNGG | 1 cut(s) | 539 |
| Mva1269I | GAATGC | 1 cut(s) | 329 |
| MvaI | CCWGG | 1 cut(s) | 539 |
| MvnI | CGCG | 2 cut(s) | 531, 552 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 190, 665 |
| NdeII | GATC | 4 cut(s) | 262, 409, 480, 511 |
| NlaIII | CATG | 2 cut(s) | 148, 598 |
| NlaIV | GGNNCC | 3 cut(s) | 252, 469, 470 |
| NmeAIII | GCCGAG | 2 cut(s) | 375, 628 |
| NmuCI | GTSAC | 1 cut(s) | 33 |
| PagI | TCATGA | 1 cut(s) | 144 |
| PceI | AGGCCT | 2 cut(s) | 131, 455 |
| PctI | GAATGC | 1 cut(s) | 329 |
| PinAI | ACCGGT | 1 cut(s) | 95 |
| PkrI | GCNGC | 2 cut(s) | 499, 615 |
| PleI | GAGTC | 3 cut(s) | 40, 85, 142 |
| PpsI | GAGTC | 3 cut(s) | 40, 85, 142 |
| Ppu21I | YACGTR | 1 cut(s) | 340 |
| Psp6I | CCWGG | 1 cut(s) | 537 |
| PspGI | CCWGG | 1 cut(s) | 537 |
| PspN4I | GGNNCC | 3 cut(s) | 252, 469, 470 |
| PspOMI | GGGCCC | 1 cut(s) | 468 |
| PspPI | GGNCC | 5 cut(s) | 88, 196, 468, 469, 526 |
| PstI | CTGCAG | 1 cut(s) | 618 |
| RsaI | GTAC | 1 cut(s) | 295 |
| RsaNI | GTAC | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 597 |
| SaqAI | TTAA | 1 cut(s) | 125 |
| SatI | GCNGC | 2 cut(s) | 498, 614 |
| Sau3AI | GATC | 4 cut(s) | 262, 409, 480, 511 |
| Sau96I | GGNCC | 5 cut(s) | 88, 196, 468, 469, 526 |
| SchI | GAGTC | 3 cut(s) | 41, 86, 142 |
| ScrFI | CCNGG | 1 cut(s) | 539 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SfaNI | GCATC | 1 cut(s) | 589 |
| SfcI | CTRYAG | 2 cut(s) | 104, 614 |
| SinI | GGWCC | 3 cut(s) | 88, 196, 526 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 597 |
| SmlI | CTYRAG | 1 cut(s) | 371 |
| SmoI | CTYRAG | 1 cut(s) | 371 |
| Sse9I | AATT | 2 cut(s) | 5, 275 |
| SseBI | AGGCCT | 2 cut(s) | 131, 455 |
| SsiI | CCGC | 2 cut(s) | 404, 529 |
| SspMI | CTAG | 1 cut(s) | 308 |
| StuI | AGGCCT | 2 cut(s) | 131, 455 |
| StyD4I | CCNGG | 1 cut(s) | 537 |
| TaiI | ACGT | 2 cut(s) | 40, 342 |
| TaqI | TCGA | 6 cut(s) | 114, 135, 265, 333, 479, 609 |
| TaqII | GACCGA | 1 cut(s) | 657 |
| TasI | AATT | 2 cut(s) | 5, 275 |
| Tru1I | TTAA | 1 cut(s) | 125 |
| Tru9I | TTAA | 1 cut(s) | 125 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseFI | GTSAC | 1 cut(s) | 33 |
| TseI | GCWGC | 2 cut(s) | 497, 613 |
| Tsp45I | GTSAC | 1 cut(s) | 33 |
| TspGWI | ACGGA | 1 cut(s) | 473 |
| TspRI | CASTG | 1 cut(s) | 351 |
| VpaK11BI | GGWCC | 3 cut(s) | 88, 196, 526 |
| XspI | CTAG | 1 cut(s) | 308 |