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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 263, 574 |
| AccII | CGCG | 2 cut(s) | 344, 415 |
| AccIII | TCCGGA | 1 cut(s) | 466 |
| AclWI | GGATC | 3 cut(s) | 347, 477, 527 |
| AcvI | CACGTG | 1 cut(s) | 242 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AfeI | AGCGCT | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 31, 157, 197, 298 |
| AflIII | ACRYGT | 2 cut(s) | 239, 241 |
| AgsI | TTSAA | 1 cut(s) | 544 |
| AluBI | AGCT | 4 cut(s) | 275, 358, 431, 540 |
| AluI | AGCT | 4 cut(s) | 275, 358, 431, 540 |
| Alw21I | GWGCWC | 2 cut(s) | 140, 249 |
| Alw26I | GTCTC | 1 cut(s) | 187 |
| Alw44I | GTGCAC | 1 cut(s) | 136 |
| AlwI | GGATC | 3 cut(s) | 347, 477, 527 |
| Aor13HI | TCCGGA | 1 cut(s) | 466 |
| Aor51HI | AGCGCT | 1 cut(s) | 369 |
| AoxI | GGCC | 1 cut(s) | 179 |
| ApaLI | GTGCAC | 1 cut(s) | 136 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| AspLEI | GCGC | 2 cut(s) | 370, 415 |
| AspS9I | GGNCC | 4 cut(s) | 180, 200, 289, 296 |
| AsuC2I | CCSGG | 1 cut(s) | 408 |
| AsuHPI | GGTGA | 2 cut(s) | 61, 106 |
| AvaII | GGWCC | 3 cut(s) | 200, 289, 296 |
| BaeGI | GKGCMC | 1 cut(s) | 140 |
| BauI | CACGAG | 1 cut(s) | 139 |
| BbrPI | CACGTG | 1 cut(s) | 242 |
| Bbv12I | GWGCWC | 2 cut(s) | 140, 249 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BccI | CCATC | 4 cut(s) | 202, 214, 346, 562 |
| BceAI | ACGGC | 1 cut(s) | 92 |
| BcnI | CCSGG | 1 cut(s) | 408 |
| BcoDI | GTCTC | 1 cut(s) | 187 |
| BfaI | CTAG | 1 cut(s) | 422 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfoI | RGCGCY | 1 cut(s) | 371 |
| BisI | GCNGC | 3 cut(s) | 125, 441, 575 |
| BlsI | GCNGC | 3 cut(s) | 126, 442, 576 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| Bme18I | GGWCC | 3 cut(s) | 200, 289, 296 |
| BmgT120I | GGNCC | 4 cut(s) | 180, 200, 289, 296 |
| BmiI | GGNNCC | 2 cut(s) | 201, 459 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmsI | GCATC | 1 cut(s) | 407 |
| BoxI | GACNNNNGTC | 1 cut(s) | 294 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 442, 474 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| BpuMI | CCSGG | 1 cut(s) | 408 |
| Bsa29I | ATCGAT | 1 cut(s) | 330 |
| BsaAI | YACGTR | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 292 |
| BsaWI | WCCGGW | 2 cut(s) | 298, 466 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 215, 245, 479, 509 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 31, 157, 197, 298 |
| BseAI | TCCGGA | 1 cut(s) | 466 |
| BseCI | ATCGAT | 1 cut(s) | 330 |
| BseDI | CCNNGG | 2 cut(s) | 72, 292 |
| BseGI | GGATG | 3 cut(s) | 225, 357, 537 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 31, 157, 197, 298 |
| BseRI | GAGGAG | 2 cut(s) | 361, 395 |
| BseSI | GKGCMC | 1 cut(s) | 140 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| Bsh1236I | CGCG | 2 cut(s) | 344, 415 |
| BshFI | GGCC | 1 cut(s) | 181 |
| BshVI | ATCGAT | 1 cut(s) | 330 |
| BsiHKAI | GWGCWC | 2 cut(s) | 140, 249 |
| BsiSI | CCGG | 4 cut(s) | 56, 299, 407, 467 |
| BslFI | GGGAC | 1 cut(s) | 213 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 31, 157, 197, 298 |
| BsmAI | GTCTC | 1 cut(s) | 187 |
| BsmFI | GGGAC | 1 cut(s) | 213 |
| BsnI | GGCC | 1 cut(s) | 181 |
| Bsp1286I | GDGCHC | 2 cut(s) | 140, 249 |
| Bsp13I | TCCGGA | 1 cut(s) | 466 |
| Bsp143I | GATC | 3 cut(s) | 339, 469, 519 |
| Bsp68I | TCGCGA | 1 cut(s) | 344 |
| BspANI | GGCC | 1 cut(s) | 181 |
| BspDI | ATCGAT | 1 cut(s) | 330 |
| BspEI | TCCGGA | 1 cut(s) | 466 |
| BspFNI | CGCG | 2 cut(s) | 344, 415 |
| BspLI | GGNNCC | 2 cut(s) | 201, 459 |
| BspPI | GGATC | 3 cut(s) | 347, 477, 527 |
| BsrBI | CCGCTC | 2 cut(s) | 263, 574 |
| BssECI | CCNNGG | 2 cut(s) | 72, 292 |
| BssMI | GATC | 3 cut(s) | 339, 469, 519 |
| BssSI | CACGAG | 1 cut(s) | 139 |
| BssT1I | CCWWGG | 1 cut(s) | 292 |
| Bst2BI | CACGAG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 26, 73 |
| BstBAI | YACGTR | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 4 cut(s) | 265, 269, 273, 372 |
| BstDEI | CTNAG | 2 cut(s) | 204, 445 |
| BstDSI | CCRYGG | 1 cut(s) | 72 |
| BstEII | GGTNACC | 1 cut(s) | 94 |
| BstF5I | GGATG | 3 cut(s) | 225, 357, 537 |
| BstFNI | CGCG | 2 cut(s) | 344, 415 |
| BstH2I | RGCGCY | 1 cut(s) | 371 |
| BstHHI | GCGC | 2 cut(s) | 370, 415 |
| BstKTI | GATC | 3 cut(s) | 342, 472, 522 |
| BstMAI | GTCTC | 1 cut(s) | 187 |
| BstMBI | GATC | 3 cut(s) | 339, 469, 519 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 437 |
| BstNSI | RCATGY | 1 cut(s) | 551 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 294 |
| BstPI | GGTNACC | 1 cut(s) | 94 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstSLI | GKGCMC | 1 cut(s) | 140 |
| BstUI | CGCG | 2 cut(s) | 344, 415 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BstX2I | RGATCY | 1 cut(s) | 469 |
| BstYI | RGATCY | 1 cut(s) | 469 |
| Bsu15I | ATCGAT | 1 cut(s) | 330 |
| BsuRI | GGCC | 1 cut(s) | 181 |
| BsuTUI | ATCGAT | 1 cut(s) | 330 |
| BtgI | CCRYGG | 1 cut(s) | 72 |
| BtgZI | GCGATG | 1 cut(s) | 430 |
| BtsCI | GGATG | 3 cut(s) | 225, 357, 537 |
| BtuMI | TCGCGA | 1 cut(s) | 344 |
| Cac8I | GCNNGC | 4 cut(s) | 265, 269, 273, 372 |
| CfoI | GCGC | 2 cut(s) | 370, 415 |
| Cfr13I | GGNCC | 4 cut(s) | 180, 200, 289, 296 |
| ClaI | ATCGAT | 1 cut(s) | 330 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviAII | CATG | 2 cut(s) | 475, 548 |
| CviQI | GTAC | 1 cut(s) | 145 |
| DdeI | CTNAG | 2 cut(s) | 204, 445 |
| DpnI | GATC | 3 cut(s) | 341, 471, 521 |
| DpnII | GATC | 3 cut(s) | 339, 469, 519 |
| EciI | GGCGGA | 2 cut(s) | 104, 494 |
| Eco130I | CCWWGG | 1 cut(s) | 292 |
| Eco47I | GGWCC | 3 cut(s) | 200, 289, 296 |
| Eco47III | AGCGCT | 1 cut(s) | 369 |
| Eco72I | CACGTG | 1 cut(s) | 242 |
| Eco91I | GGTNACC | 1 cut(s) | 94 |
| EcoO109I | RGGNCCY | 1 cut(s) | 200 |
| EcoO65I | GGTNACC | 1 cut(s) | 94 |
| EcoT14I | CCWWGG | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 292 |
| FaeI | CATG | 2 cut(s) | 478, 551 |
| FaiI | YATR | 5 cut(s) | 169, 317, 377, 476, 549 |
| FaqI | GGGAC | 1 cut(s) | 213 |
| FatI | CATG | 2 cut(s) | 474, 547 |
| FauI | CCCGC | 4 cut(s) | 112, 256, 315, 485 |
| Fnu4HI | GCNGC | 3 cut(s) | 125, 441, 575 |
| FokI | GGATG | 3 cut(s) | 232, 364, 544 |
| Fsp4HI | GCNGC | 3 cut(s) | 125, 441, 575 |
| FspBI | CTAG | 1 cut(s) | 422 |
| GlaI | GCGC | 2 cut(s) | 369, 414 |
| GluI | GCNGC | 3 cut(s) | 125, 441, 575 |
| HaeII | RGCGCY | 1 cut(s) | 371 |
| HaeIII | GGCC | 1 cut(s) | 181 |
| HapII | CCGG | 4 cut(s) | 56, 299, 407, 467 |
| HhaI | GCGC | 2 cut(s) | 370, 415 |
| Hin1II | CATG | 2 cut(s) | 478, 551 |
| Hin6I | GCGC | 2 cut(s) | 368, 413 |
| HinP1I | GCGC | 2 cut(s) | 368, 413 |
| HpaII | CCGG | 4 cut(s) | 56, 299, 407, 467 |
| HphI | GGTGA | 2 cut(s) | 61, 106 |
| Hpy166II | GTNNAC | 4 cut(s) | 29, 138, 289, 526 |
| Hpy188I | TCNGA | 2 cut(s) | 11, 581 |
| Hpy188III | TCNNGA | 3 cut(s) | 343, 395, 467 |
| Hpy8I | GTNNAC | 4 cut(s) | 29, 138, 289, 526 |
| Hpy99I | CGWCG | 1 cut(s) | 393 |
| HpyAV | CCTTC | 2 cut(s) | 329, 576 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 26, 73 |
| HpyCH4IV | ACGT | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 1 cut(s) | 138 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 437 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 445 |
| HpySE526I | ACGT | 1 cut(s) | 241 |
| Hsp92II | CATG | 2 cut(s) | 478, 551 |
| HspAI | GCGC | 2 cut(s) | 368, 413 |
| Kpn2I | TCCGGA | 1 cut(s) | 466 |
| Kzo9I | GATC | 3 cut(s) | 339, 469, 519 |
| LmnI | GCTCC | 6 cut(s) | 260, 355, 410, 463, 537, 571 |
| LpnPI | CCDG | 7 cut(s) | 69, 112, 182, 312, 344, 420, 480 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| LweI | GCATC | 1 cut(s) | 407 |
| MaeI | CTAG | 1 cut(s) | 422 |
| MaeII | ACGT | 1 cut(s) | 241 |
| MaeIII | GTNAC | 2 cut(s) | 94, 186 |
| MalI | GATC | 3 cut(s) | 341, 471, 521 |
| MbiI | CCGCTC | 2 cut(s) | 263, 574 |
| MboI | GATC | 3 cut(s) | 339, 469, 519 |
| MboII | GAAGA | 1 cut(s) | 48 |
| MflI | RGATCY | 1 cut(s) | 469 |
| MhlI | GDGCHC | 2 cut(s) | 140, 249 |
| MluCI | AATT | 1 cut(s) | 40 |
| MroI | TCCGGA | 1 cut(s) | 466 |
| MslI | CAYNNNNRTG | 1 cut(s) | 71 |
| MspA1I | CMGCKG | 1 cut(s) | 440 |
| MspI | CCGG | 4 cut(s) | 56, 299, 407, 467 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| MvnI | CGCG | 2 cut(s) | 344, 415 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 437 |
| NciI | CCSGG | 1 cut(s) | 408 |
| NdeII | GATC | 3 cut(s) | 339, 469, 519 |
| NlaIII | CATG | 2 cut(s) | 478, 551 |
| NlaIV | GGNNCC | 2 cut(s) | 201, 459 |
| NmuCI | GTSAC | 1 cut(s) | 94 |
| NruI | TCGCGA | 1 cut(s) | 344 |
| NspI | RCATGY | 1 cut(s) | 551 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 56 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PkrI | GCNGC | 3 cut(s) | 126, 442, 576 |
| PmaCI | CACGTG | 1 cut(s) | 242 |
| PmlI | CACGTG | 1 cut(s) | 242 |
| Ppu21I | YACGTR | 1 cut(s) | 242 |
| PpuMI | RGGWCCY | 1 cut(s) | 200 |
| PshAI | GACNNNNGTC | 1 cut(s) | 294 |
| Psp5II | RGGWCCY | 1 cut(s) | 200 |
| PspCI | CACGTG | 1 cut(s) | 242 |
| PspEI | GGTNACC | 1 cut(s) | 94 |
| PspN4I | GGNNCC | 2 cut(s) | 201, 459 |
| PspPI | GGNCC | 4 cut(s) | 180, 200, 289, 296 |
| PspPPI | RGGWCCY | 1 cut(s) | 200 |
| PsuI | RGATCY | 1 cut(s) | 469 |
| RruI | TCGCGA | 1 cut(s) | 344 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 71 |
| SatI | GCNGC | 3 cut(s) | 125, 441, 575 |
| Sau3AI | GATC | 3 cut(s) | 339, 469, 519 |
| Sau96I | GGNCC | 4 cut(s) | 180, 200, 289, 296 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SduI | GDGCHC | 2 cut(s) | 140, 249 |
| SfaNI | GCATC | 1 cut(s) | 407 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SinI | GGWCC | 3 cut(s) | 200, 289, 296 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 71 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| Sse9I | AATT | 1 cut(s) | 40 |
| SspMI | CTAG | 1 cut(s) | 422 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| StyI | CCWWGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 3 cut(s) | 16, 26, 73 |
| TaiI | ACGT | 1 cut(s) | 244 |
| TaqI | TCGA | 3 cut(s) | 228, 278, 330 |
| TasI | AATT | 1 cut(s) | 40 |
| TauI | GCSGC | 2 cut(s) | 127, 577 |
| TseFI | GTSAC | 1 cut(s) | 94 |
| TseI | GCWGC | 1 cut(s) | 440 |
| Tsp45I | GTSAC | 1 cut(s) | 94 |
| TspDTI | ATGAA | 1 cut(s) | 348 |
| VneI | GTGCAC | 1 cut(s) | 136 |
| VpaK11BI | GGWCC | 3 cut(s) | 200, 289, 296 |
| XceI | RCATGY | 1 cut(s) | 551 |
| XspI | CTAG | 1 cut(s) | 422 |