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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 294 |
| AccII | CGCG | 2 cut(s) | 55, 587 |
| AciI | CCGC | 5 cut(s) | 20, 95, 189, 279, 409 |
| AclWI | GGATC | 1 cut(s) | 137 |
| AfeI | AGCGCT | 1 cut(s) | 456 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 218, 322, 510, 511 |
| AgsI | TTSAA | 3 cut(s) | 365, 565, 710 |
| AjnI | CCWGG | 2 cut(s) | 617, 714 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 9, 41 |
| AluBI | AGCT | 8 cut(s) | 13, 61, 331, 361, 541, 561, 603, 640 |
| AluI | AGCT | 8 cut(s) | 13, 61, 331, 361, 541, 561, 603, 640 |
| Alw21I | GWGCWC | 1 cut(s) | 63 |
| Alw26I | GTCTC | 1 cut(s) | 477 |
| AlwI | GGATC | 1 cut(s) | 137 |
| Ama87I | CYCGRG | 1 cut(s) | 218 |
| Aor51HI | AGCGCT | 1 cut(s) | 456 |
| AoxI | GGCC | 1 cut(s) | 501 |
| ApeKI | GCWGC | 3 cut(s) | 10, 319, 541 |
| AseI | ATTAAT | 1 cut(s) | 417 |
| AspLEI | GCGC | 4 cut(s) | 235, 295, 457, 587 |
| AspS9I | GGNCC | 1 cut(s) | 502 |
| AsuC2I | CCSGG | 2 cut(s) | 316, 535 |
| AsuHPI | GGTGA | 3 cut(s) | 41, 206, 338 |
| AvaI | CYCGRG | 1 cut(s) | 218 |
| BanII | GRGCYC | 1 cut(s) | 63 |
| Bbv12I | GWGCWC | 1 cut(s) | 63 |
| BbvI | GCAGC | 3 cut(s) | 22, 306, 528 |
| BccI | CCATC | 4 cut(s) | 131, 186, 416, 433 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 272, 306 |
| BciT130I | CCWGG | 2 cut(s) | 619, 716 |
| BcnI | CCSGG | 2 cut(s) | 316, 535 |
| BcoDI | GTCTC | 1 cut(s) | 477 |
| BfmI | CTRYAG | 1 cut(s) | 320 |
| BfoI | RGCGCY | 1 cut(s) | 458 |
| BisI | GCNGC | 3 cut(s) | 11, 320, 542 |
| BlsI | GCNGC | 3 cut(s) | 12, 321, 543 |
| Bme1390I | CCNGG | 4 cut(s) | 316, 535, 619, 716 |
| BmeT110I | CYCGRG | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 1 cut(s) | 502 |
| BmiI | GGNNCC | 3 cut(s) | 142, 504, 632 |
| BmrFI | CCNGG | 4 cut(s) | 316, 535, 619, 716 |
| BmsI | GCATC | 4 cut(s) | 59, 231, 475, 579 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 615, 647 |
| BpmI | CTGGAG | 3 cut(s) | 326, 640, 698 |
| Bpu10I | CCTNAGC | 1 cut(s) | 636 |
| BpuMI | CCSGG | 2 cut(s) | 316, 535 |
| BsaAI | YACGTR | 1 cut(s) | 607 |
| BsaBI | GATNNNNATC | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 3 cut(s) | 217, 379, 617 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 218, 322, 510, 511 |
| Bse8I | GATNNNNATC | 1 cut(s) | 128 |
| BseBI | CCWGG | 2 cut(s) | 619, 716 |
| BseDI | CCNNGG | 3 cut(s) | 217, 379, 617 |
| BseGI | GGATG | 1 cut(s) | 444 |
| BseJI | GATNNNNATC | 1 cut(s) | 128 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 218, 322, 510, 511 |
| BseMII | CTCAG | 2 cut(s) | 147, 353 |
| BseRI | GAGGAG | 1 cut(s) | 482 |
| BseXI | GCAGC | 3 cut(s) | 22, 306, 528 |
| Bsh1236I | CGCG | 2 cut(s) | 55, 587 |
| Bsh1285I | CGRYCG | 1 cut(s) | 193 |
| BshFI | GGCC | 1 cut(s) | 503 |
| BsiEI | CGRYCG | 1 cut(s) | 193 |
| BsiHKAI | GWGCWC | 1 cut(s) | 63 |
| BsiHKCI | CYCGRG | 1 cut(s) | 218 |
| BsiSI | CCGG | 3 cut(s) | 47, 316, 534 |
| BslFI | GGGAC | 1 cut(s) | 677 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 218, 322, 510, 511 |
| BsmAI | GTCTC | 1 cut(s) | 477 |
| BsmFI | GGGAC | 1 cut(s) | 677 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 1 cut(s) | 503 |
| BsoBI | CYCGRG | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 63 |
| Bsp143I | GATC | 3 cut(s) | 129, 301, 738 |
| Bsp68I | TCGCGA | 1 cut(s) | 55 |
| BspACI | CCGC | 5 cut(s) | 20, 95, 189, 279, 409 |
| BspANI | GGCC | 1 cut(s) | 503 |
| BspCNI | CTCAG | 2 cut(s) | 146, 352 |
| BspFNI | CGCG | 2 cut(s) | 55, 587 |
| BspLI | GGNNCC | 3 cut(s) | 142, 504, 632 |
| BspMAI | CTGCAG | 1 cut(s) | 324 |
| BspPI | GGATC | 1 cut(s) | 137 |
| BssECI | CCNNGG | 3 cut(s) | 217, 379, 617 |
| BssMI | GATC | 3 cut(s) | 129, 301, 738 |
| Bst2UI | CCWGG | 2 cut(s) | 619, 716 |
| Bst4CI | ACNGT | 1 cut(s) | 380 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 241 |
| BstBAI | YACGTR | 1 cut(s) | 607 |
| BstC8I | GCNNGC | 8 cut(s) | 105, 291, 355, 359, 411, 453, 459, 721 |
| BstDEI | CTNAG | 5 cut(s) | 116, 133, 339, 571, 636 |
| BstDSI | CCRYGG | 1 cut(s) | 379 |
| BstEII | GGTNACC | 1 cut(s) | 29 |
| BstF5I | GGATG | 1 cut(s) | 444 |
| BstFNI | CGCG | 2 cut(s) | 55, 587 |
| BstH2I | RGCGCY | 1 cut(s) | 458 |
| BstHHI | GCGC | 4 cut(s) | 235, 295, 457, 587 |
| BstKTI | GATC | 3 cut(s) | 132, 304, 741 |
| BstMAI | GTCTC | 1 cut(s) | 477 |
| BstMBI | GATC | 3 cut(s) | 129, 301, 738 |
| BstMCI | CGRYCG | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 241, 328, 494, 637 |
| BstNI | CCWGG | 2 cut(s) | 619, 716 |
| BstPI | GGTNACC | 1 cut(s) | 29 |
| BstSCI | CCNGG | 4 cut(s) | 314, 533, 617, 714 |
| BstSFI | CTRYAG | 1 cut(s) | 320 |
| BstUI | CGCG | 2 cut(s) | 55, 587 |
| BstV1I | GCAGC | 3 cut(s) | 22, 306, 528 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| BsuRI | GGCC | 1 cut(s) | 503 |
| BtgI | CCRYGG | 1 cut(s) | 379 |
| BtgZI | GCGATG | 2 cut(s) | 36, 602 |
| BtsCI | GGATG | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 211 |
| BtuMI | TCGCGA | 1 cut(s) | 55 |
| Cac8I | GCNNGC | 8 cut(s) | 105, 291, 355, 359, 411, 453, 459, 721 |
| CfoI | GCGC | 4 cut(s) | 235, 295, 457, 587 |
| Cfr13I | GGNCC | 1 cut(s) | 502 |
| CviAII | CATG | 3 cut(s) | 154, 262, 523 |
| DdeI | CTNAG | 5 cut(s) | 116, 133, 339, 571, 636 |
| DpnI | GATC | 3 cut(s) | 131, 303, 740 |
| DpnII | GATC | 3 cut(s) | 129, 301, 738 |
| EciI | GGCGGA | 2 cut(s) | 110, 268 |
| Ecl136II | GAGCTC | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 63 |
| Eco47III | AGCGCT | 1 cut(s) | 456 |
| Eco53kI | GAGCTC | 1 cut(s) | 61 |
| Eco88I | CYCGRG | 1 cut(s) | 218 |
| Eco91I | GGTNACC | 1 cut(s) | 29 |
| EcoICRI | GAGCTC | 1 cut(s) | 61 |
| EcoO65I | GGTNACC | 1 cut(s) | 29 |
| EcoRII | CCWGG | 2 cut(s) | 617, 714 |
| EcoT38I | GRGCYC | 1 cut(s) | 63 |
| FaeI | CATG | 3 cut(s) | 157, 265, 526 |
| FaiI | YATR | 7 cut(s) | 36, 68, 155, 263, 404, 524, 579 |
| FaqI | GGGAC | 1 cut(s) | 677 |
| FatI | CATG | 3 cut(s) | 153, 261, 522 |
| FauI | CCCGC | 1 cut(s) | 402 |
| Fnu4HI | GCNGC | 3 cut(s) | 11, 320, 542 |
| FokI | GGATG | 1 cut(s) | 451 |
| FriOI | GRGCYC | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 3 cut(s) | 11, 320, 542 |
| FspI | TGCGCA | 1 cut(s) | 294 |
| GlaI | GCGC | 4 cut(s) | 234, 294, 456, 586 |
| GluI | GCNGC | 3 cut(s) | 11, 320, 542 |
| GsuI | CTGGAG | 3 cut(s) | 326, 640, 698 |
| HaeII | RGCGCY | 1 cut(s) | 458 |
| HaeIII | GGCC | 1 cut(s) | 503 |
| HapII | CCGG | 3 cut(s) | 47, 316, 534 |
| HhaI | GCGC | 4 cut(s) | 235, 295, 457, 587 |
| Hin1II | CATG | 3 cut(s) | 157, 265, 526 |
| Hin6I | GCGC | 4 cut(s) | 233, 293, 455, 585 |
| HinP1I | GCGC | 4 cut(s) | 233, 293, 455, 585 |
| HincII | GTYRAC | 1 cut(s) | 691 |
| HindII | GTYRAC | 1 cut(s) | 691 |
| HinfI | GANTC | 3 cut(s) | 470, 515, 702 |
| HpaII | CCGG | 3 cut(s) | 47, 316, 534 |
| HphI | GGTGA | 3 cut(s) | 41, 206, 338 |
| Hpy166II | GTNNAC | 2 cut(s) | 259, 691 |
| Hpy188I | TCNGA | 2 cut(s) | 136, 342 |
| Hpy188III | TCNNGA | 5 cut(s) | 54, 182, 227, 305, 365 |
| Hpy8I | GTNNAC | 2 cut(s) | 259, 691 |
| HpyCH4III | ACNGT | 1 cut(s) | 380 |
| HpyCH4IV | ACGT | 1 cut(s) | 606 |
| HpyCH4V | TGCA | 5 cut(s) | 107, 151, 322, 544, 679 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 241, 328, 494, 637 |
| HpyF3I | CTNAG | 5 cut(s) | 116, 133, 339, 571, 636 |
| HpySE526I | ACGT | 1 cut(s) | 606 |
| Hsp92II | CATG | 3 cut(s) | 157, 265, 526 |
| HspAI | GCGC | 4 cut(s) | 233, 293, 455, 585 |
| Kzo9I | GATC | 3 cut(s) | 129, 301, 738 |
| LmnI | GCTCC | 3 cut(s) | 448, 600, 636 |
| Lsp1109I | GCAGC | 3 cut(s) | 22, 306, 528 |
| LweI | GCATC | 4 cut(s) | 59, 231, 475, 579 |
| MaeII | ACGT | 1 cut(s) | 606 |
| MaeIII | GTNAC | 3 cut(s) | 29, 157, 206 |
| MalI | GATC | 3 cut(s) | 131, 303, 740 |
| MboI | GATC | 3 cut(s) | 129, 301, 738 |
| MfeI | CAATTG | 1 cut(s) | 172 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MhlI | GDGCHC | 1 cut(s) | 63 |
| MluCI | AATT | 4 cut(s) | 172, 265, 642, 655 |
| MlyI | GAGTC | 3 cut(s) | 479, 524, 711 |
| MmeI | TCCRAC | 2 cut(s) | 426, 578 |
| MseI | TTAA | 3 cut(s) | 374, 417, 429 |
| MspA1I | CMGCKG | 1 cut(s) | 13 |
| MspI | CCGG | 3 cut(s) | 47, 316, 534 |
| MspR9I | CCNGG | 4 cut(s) | 316, 535, 619, 716 |
| MunI | CAATTG | 1 cut(s) | 172 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvaI | CCWGG | 2 cut(s) | 619, 716 |
| MvnI | CGCG | 2 cut(s) | 55, 587 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 241, 328, 494, 637 |
| NciI | CCSGG | 2 cut(s) | 316, 535 |
| NdeII | GATC | 3 cut(s) | 129, 301, 738 |
| NlaIII | CATG | 3 cut(s) | 157, 265, 526 |
| NlaIV | GGNNCC | 3 cut(s) | 142, 504, 632 |
| NmeAIII | GCCGAG | 2 cut(s) | 307, 514 |
| NmuCI | GTSAC | 2 cut(s) | 29, 206 |
| NruI | TCGCGA | 1 cut(s) | 55 |
| NsbI | TGCGCA | 1 cut(s) | 294 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PkrI | GCNGC | 3 cut(s) | 12, 321, 543 |
| PleI | GAGTC | 3 cut(s) | 478, 523, 710 |
| PpsI | GAGTC | 3 cut(s) | 478, 523, 710 |
| Ppu21I | YACGTR | 1 cut(s) | 607 |
| PshBI | ATTAAT | 1 cut(s) | 417 |
| Psp124BI | GAGCTC | 1 cut(s) | 63 |
| Psp6I | CCWGG | 2 cut(s) | 617, 714 |
| PspEI | GGTNACC | 1 cut(s) | 29 |
| PspGI | CCWGG | 2 cut(s) | 617, 714 |
| PspN4I | GGNNCC | 3 cut(s) | 142, 504, 632 |
| PspPI | GGNCC | 1 cut(s) | 502 |
| PstI | CTGCAG | 1 cut(s) | 324 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| PvuII | CAGCTG | 1 cut(s) | 13 |
| RruI | TCGCGA | 1 cut(s) | 55 |
| SacI | GAGCTC | 1 cut(s) | 63 |
| SaqAI | TTAA | 3 cut(s) | 374, 417, 429 |
| SatI | GCNGC | 3 cut(s) | 11, 320, 542 |
| Sau3AI | GATC | 3 cut(s) | 129, 301, 738 |
| Sau96I | GGNCC | 1 cut(s) | 502 |
| SchI | GAGTC | 3 cut(s) | 479, 524, 711 |
| ScrFI | CCNGG | 4 cut(s) | 316, 535, 619, 716 |
| SduI | GDGCHC | 1 cut(s) | 63 |
| SfaNI | GCATC | 4 cut(s) | 59, 231, 475, 579 |
| SfcI | CTRYAG | 1 cut(s) | 320 |
| Sse9I | AATT | 4 cut(s) | 172, 265, 642, 655 |
| SsiI | CCGC | 5 cut(s) | 20, 95, 189, 279, 409 |
| SstI | GAGCTC | 1 cut(s) | 63 |
| StyD4I | CCNGG | 4 cut(s) | 314, 533, 617, 714 |
| TaaI | ACNGT | 1 cut(s) | 380 |
| TaiI | ACGT | 1 cut(s) | 609 |
| TaqI | TCGA | 2 cut(s) | 478, 741 |
| TasI | AATT | 4 cut(s) | 172, 265, 642, 655 |
| Tru1I | TTAA | 3 cut(s) | 374, 417, 429 |
| Tru9I | TTAA | 3 cut(s) | 374, 417, 429 |
| TscAI | CASTG | 1 cut(s) | 211 |
| TseFI | GTSAC | 2 cut(s) | 29, 206 |
| TseI | GCWGC | 3 cut(s) | 10, 319, 541 |
| Tsp45I | GTSAC | 2 cut(s) | 29, 206 |
| TspDTI | ATGAA | 1 cut(s) | 278 |
| TspRI | CASTG | 1 cut(s) | 211 |
| VspI | ATTAAT | 1 cut(s) | 417 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 151 |