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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 172 |
| AccII | CGCG | 1 cut(s) | 479 |
| AciI | CCGC | 4 cut(s) | 76, 79, 216, 479 |
| AclWI | GGATC | 1 cut(s) | 501 |
| AcuI | CTGAAG | 1 cut(s) | 123 |
| AfaI | GTAC | 3 cut(s) | 148, 283, 397 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 310 |
| AgsI | TTSAA | 1 cut(s) | 115 |
| AluBI | AGCT | 6 cut(s) | 51, 119, 172, 277, 454, 584 |
| AluI | AGCT | 6 cut(s) | 51, 119, 172, 277, 454, 584 |
| AlwI | GGATC | 1 cut(s) | 501 |
| Ama87I | CYCGRG | 1 cut(s) | 387 |
| AoxI | GGCC | 1 cut(s) | 552 |
| ApeKI | GCWGC | 2 cut(s) | 219, 581 |
| AspLEI | GCGC | 3 cut(s) | 224, 324, 479 |
| AspS9I | GGNCC | 2 cut(s) | 135, 552 |
| AvaI | CYCGRG | 1 cut(s) | 387 |
| AvaII | GGWCC | 1 cut(s) | 135 |
| BbvI | GCAGC | 2 cut(s) | 206, 593 |
| BccI | CCATC | 5 cut(s) | 14, 31, 467, 542, 566 |
| BceAI | ACGGC | 1 cut(s) | 413 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 548, 582, 615, 649 |
| BciVI | GTATCC | 1 cut(s) | 255 |
| BfaI | CTAG | 4 cut(s) | 72, 96, 122, 393 |
| BfoI | RGCGCY | 1 cut(s) | 325 |
| BfuAI | ACCTGC | 1 cut(s) | 172 |
| BfuI | GTATCC | 1 cut(s) | 255 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 330 |
| BisI | GCNGC | 5 cut(s) | 77, 217, 220, 480, 582 |
| BlsI | GCNGC | 5 cut(s) | 78, 218, 221, 481, 583 |
| BmcAI | AGTACT | 1 cut(s) | 397 |
| Bme18I | GGWCC | 1 cut(s) | 135 |
| BmeT110I | CYCGRG | 1 cut(s) | 387 |
| BmgT120I | GGNCC | 2 cut(s) | 135, 552 |
| BmiI | GGNNCC | 2 cut(s) | 240, 553 |
| BmsI | GCATC | 3 cut(s) | 73, 82, 187 |
| BpmI | CTGGAG | 1 cut(s) | 194 |
| BsaBI | GATNNNNATC | 1 cut(s) | 498 |
| BsaJI | CCNNGG | 3 cut(s) | 87, 138, 225 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 310 |
| Bse118I | RCCGGY | 1 cut(s) | 329 |
| Bse1I | ACTGG | 1 cut(s) | 651 |
| Bse8I | GATNNNNATC | 1 cut(s) | 498 |
| BseDI | CCNNGG | 3 cut(s) | 87, 138, 225 |
| BseGI | GGATG | 4 cut(s) | 42, 88, 97, 553 |
| BseJI | GATNNNNATC | 1 cut(s) | 498 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 310 |
| BseMII | CTCAG | 1 cut(s) | 426 |
| BseNI | ACTGG | 1 cut(s) | 651 |
| BseRI | GAGGAG | 2 cut(s) | 80, 392 |
| BseXI | GCAGC | 2 cut(s) | 206, 593 |
| Bsh1236I | CGCG | 1 cut(s) | 479 |
| Bsh1285I | CGRYCG | 1 cut(s) | 253 |
| BshFI | GGCC | 1 cut(s) | 554 |
| BsiEI | CGRYCG | 1 cut(s) | 253 |
| BsiHKCI | CYCGRG | 1 cut(s) | 387 |
| BsiSI | CCGG | 1 cut(s) | 330 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 310 |
| BsnI | GGCC | 1 cut(s) | 554 |
| BsoBI | CYCGRG | 1 cut(s) | 387 |
| Bsp143I | GATC | 4 cut(s) | 250, 383, 493, 641 |
| BspACI | CCGC | 4 cut(s) | 76, 79, 216, 479 |
| BspANI | GGCC | 1 cut(s) | 554 |
| BspCNI | CTCAG | 1 cut(s) | 427 |
| BspFNI | CGCG | 1 cut(s) | 479 |
| BspLI | GGNNCC | 2 cut(s) | 240, 553 |
| BspMI | ACCTGC | 1 cut(s) | 172 |
| BspPI | GGATC | 1 cut(s) | 501 |
| BsrFI | RCCGGY | 1 cut(s) | 329 |
| BsrI | ACTGG | 1 cut(s) | 651 |
| BssAI | RCCGGY | 1 cut(s) | 329 |
| BssECI | CCNNGG | 3 cut(s) | 87, 138, 225 |
| BssMI | GATC | 4 cut(s) | 250, 383, 493, 641 |
| BssT1I | CCWWGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 2 cut(s) | 213, 305 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstC8I | GCNNGC | 6 cut(s) | 53, 57, 331, 426, 624, 648 |
| BstDEI | CTNAG | 1 cut(s) | 435 |
| BstF5I | GGATG | 4 cut(s) | 42, 88, 97, 553 |
| BstFNI | CGCG | 1 cut(s) | 479 |
| BstH2I | RGCGCY | 1 cut(s) | 325 |
| BstHHI | GCGC | 3 cut(s) | 224, 324, 479 |
| BstKTI | GATC | 4 cut(s) | 253, 386, 496, 644 |
| BstMBI | GATC | 4 cut(s) | 250, 383, 493, 641 |
| BstMCI | CGRYCG | 1 cut(s) | 253 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 178, 330 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstUI | CGCG | 1 cut(s) | 479 |
| BstV1I | GCAGC | 2 cut(s) | 206, 593 |
| BsuI | GTATCC | 1 cut(s) | 255 |
| BsuRI | GGCC | 1 cut(s) | 554 |
| BtgZI | GCGATG | 1 cut(s) | 210 |
| BtsCI | GGATG | 4 cut(s) | 42, 88, 97, 553 |
| BtsI | GCAGTG | 1 cut(s) | 66 |
| BtsIMutI | CAGTG | 1 cut(s) | 66 |
| BveI | ACCTGC | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 6 cut(s) | 53, 57, 331, 426, 624, 648 |
| CfoI | GCGC | 3 cut(s) | 224, 324, 479 |
| Cfr10I | RCCGGY | 1 cut(s) | 329 |
| Cfr13I | GGNCC | 2 cut(s) | 135, 552 |
| Csp6I | GTAC | 3 cut(s) | 147, 282, 396 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 471, 506 |
| CviAII | CATG | 2 cut(s) | 167, 443 |
| CviQI | GTAC | 3 cut(s) | 147, 282, 396 |
| DdeI | CTNAG | 1 cut(s) | 435 |
| DpnI | GATC | 4 cut(s) | 252, 385, 495, 643 |
| DpnII | GATC | 4 cut(s) | 250, 383, 493, 641 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 1 cut(s) | 225 |
| Eco47I | GGWCC | 1 cut(s) | 135 |
| Eco57I | CTGAAG | 1 cut(s) | 123 |
| Eco88I | CYCGRG | 1 cut(s) | 387 |
| EcoO109I | RGGNCCY | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 1 cut(s) | 225 |
| ErhI | CCWWGG | 1 cut(s) | 225 |
| FaeI | CATG | 2 cut(s) | 170, 446 |
| FaiI | YATR | 3 cut(s) | 168, 444, 620 |
| FatI | CATG | 2 cut(s) | 166, 442 |
| FauI | CCCGC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 5 cut(s) | 77, 217, 220, 480, 582 |
| FokI | GGATG | 4 cut(s) | 49, 95, 104, 560 |
| Fsp4HI | GCNGC | 5 cut(s) | 77, 217, 220, 480, 582 |
| FspBI | CTAG | 4 cut(s) | 72, 96, 122, 393 |
| GlaI | GCGC | 3 cut(s) | 223, 323, 478 |
| GluI | GCNGC | 5 cut(s) | 77, 217, 220, 480, 582 |
| GsuI | CTGGAG | 1 cut(s) | 194 |
| HaeII | RGCGCY | 1 cut(s) | 325 |
| HaeIII | GGCC | 1 cut(s) | 554 |
| HapII | CCGG | 1 cut(s) | 330 |
| HhaI | GCGC | 3 cut(s) | 224, 324, 479 |
| Hin1II | CATG | 2 cut(s) | 170, 446 |
| Hin6I | GCGC | 3 cut(s) | 222, 322, 477 |
| HinP1I | GCGC | 3 cut(s) | 222, 322, 477 |
| HincII | GTYRAC | 2 cut(s) | 301, 448 |
| HindII | GTYRAC | 2 cut(s) | 301, 448 |
| HinfI | GANTC | 1 cut(s) | 565 |
| HpaII | CCGG | 1 cut(s) | 330 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 448 |
| Hpy188I | TCNGA | 2 cut(s) | 547, 600 |
| Hpy188III | TCNNGA | 4 cut(s) | 122, 188, 248, 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 448 |
| HpyAV | CCTTC | 3 cut(s) | 27, 331, 358 |
| HpyCH4III | ACNGT | 2 cut(s) | 213, 305 |
| HpyCH4V | TGCA | 5 cut(s) | 59, 166, 289, 559, 622 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 178, 330 |
| HpyF3I | CTNAG | 1 cut(s) | 435 |
| Hsp92II | CATG | 2 cut(s) | 170, 446 |
| HspAI | GCGC | 3 cut(s) | 222, 322, 477 |
| KroI | GCCGGC | 1 cut(s) | 329 |
| KroNI | GCCGGC | 1 cut(s) | 331 |
| Kzo9I | GATC | 4 cut(s) | 250, 383, 493, 641 |
| LmnI | GCTCC | 4 cut(s) | 244, 352, 379, 459 |
| LpnPI | CCDG | 6 cut(s) | 158, 167, 173, 343, 570, 608 |
| Lsp1109I | GCAGC | 2 cut(s) | 206, 593 |
| LweI | GCATC | 3 cut(s) | 73, 82, 187 |
| MaeI | CTAG | 4 cut(s) | 72, 96, 122, 393 |
| MalI | GATC | 4 cut(s) | 252, 385, 495, 643 |
| MboI | GATC | 4 cut(s) | 250, 383, 493, 641 |
| MboII | GAAGA | 3 cut(s) | 137, 494, 538 |
| MluCI | AATT | 2 cut(s) | 409, 514 |
| MmeI | TCCRAC | 4 cut(s) | 186, 246, 330, 569 |
| MroNI | GCCGGC | 1 cut(s) | 329 |
| MseI | TTAA | 2 cut(s) | 359, 655 |
| MspA1I | CMGCKG | 1 cut(s) | 584 |
| MspI | CCGG | 1 cut(s) | 330 |
| MvnI | CGCG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 178, 330 |
| NaeI | GCCGGC | 1 cut(s) | 331 |
| NdeII | GATC | 4 cut(s) | 250, 383, 493, 641 |
| NgoMIV | GCCGGC | 1 cut(s) | 329 |
| NlaIII | CATG | 2 cut(s) | 170, 446 |
| NlaIV | GGNNCC | 2 cut(s) | 240, 553 |
| NmeAIII | GCCGAG | 1 cut(s) | 112 |
| NspI | RCATGY | 1 cut(s) | 446 |
| PdiI | GCCGGC | 1 cut(s) | 331 |
| PfeI | GAWTC | 1 cut(s) | 565 |
| PkrI | GCNGC | 5 cut(s) | 78, 218, 221, 481, 583 |
| Ple19I | CGATCG | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 2 cut(s) | 240, 553 |
| PspPI | GGNCC | 2 cut(s) | 135, 552 |
| PvuI | CGATCG | 1 cut(s) | 253 |
| PvuII | CAGCTG | 1 cut(s) | 584 |
| RsaI | GTAC | 3 cut(s) | 148, 283, 397 |
| RsaNI | GTAC | 3 cut(s) | 147, 282, 396 |
| SaqAI | TTAA | 2 cut(s) | 359, 655 |
| SatI | GCNGC | 5 cut(s) | 77, 217, 220, 480, 582 |
| Sau3AI | GATC | 4 cut(s) | 250, 383, 493, 641 |
| Sau96I | GGNCC | 2 cut(s) | 135, 552 |
| ScaI | AGTACT | 1 cut(s) | 397 |
| SfaNI | GCATC | 3 cut(s) | 73, 82, 187 |
| SinI | GGWCC | 1 cut(s) | 135 |
| Sse9I | AATT | 2 cut(s) | 409, 514 |
| SsiI | CCGC | 4 cut(s) | 76, 79, 216, 479 |
| SspMI | CTAG | 4 cut(s) | 72, 96, 122, 393 |
| StyI | CCWWGG | 1 cut(s) | 225 |
| TaaI | ACNGT | 2 cut(s) | 213, 305 |
| TaqI | TCGA | 1 cut(s) | 563 |
| TaqII | GACCGA | 1 cut(s) | 152 |
| TasI | AATT | 2 cut(s) | 409, 514 |
| TatI | WGTACW | 1 cut(s) | 395 |
| TauI | GCSGC | 3 cut(s) | 79, 219, 482 |
| TfiI | GAWTC | 1 cut(s) | 565 |
| Tru1I | TTAA | 2 cut(s) | 359, 655 |
| Tru9I | TTAA | 2 cut(s) | 359, 655 |
| TscAI | CASTG | 1 cut(s) | 66 |
| TseI | GCWGC | 2 cut(s) | 219, 581 |
| TspGWI | ACGGA | 1 cut(s) | 231 |
| TspRI | CASTG | 1 cut(s) | 66 |
| VpaK11BI | GGWCC | 1 cut(s) | 135 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XceI | RCATGY | 1 cut(s) | 446 |
| XspI | CTAG | 4 cut(s) | 72, 96, 122, 393 |
| ZrmI | AGTACT | 1 cut(s) | 397 |