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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 619 |
| AccI | GTMKAC | 1 cut(s) | 500 |
| AciI | CCGC | 6 cut(s) | 67, 83, 106, 365, 485, 666 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 364, 587 |
| AgeI | ACCGGT | 1 cut(s) | 536 |
| AgsI | TTSAA | 1 cut(s) | 392 |
| AleI | CACNNNNGTG | 1 cut(s) | 638 |
| AluBI | AGCT | 5 cut(s) | 79, 338, 598, 619, 652 |
| AluI | AGCT | 5 cut(s) | 79, 338, 598, 619, 652 |
| Ama87I | CYCGRG | 2 cut(s) | 587, 599 |
| AoxI | GGCC | 3 cut(s) | 90, 355, 542 |
| ApeKI | GCWGC | 1 cut(s) | 619 |
| AsiGI | ACCGGT | 1 cut(s) | 536 |
| AspLEI | GCGC | 1 cut(s) | 65 |
| AspS9I | GGNCC | 2 cut(s) | 356, 542 |
| AsuC2I | CCSGG | 2 cut(s) | 138, 512 |
| AsuHPI | GGTGA | 4 cut(s) | 254, 474, 625, 659 |
| AvaI | CYCGRG | 2 cut(s) | 587, 599 |
| BanII | GRGCYC | 1 cut(s) | 143 |
| BbvI | GCAGC | 1 cut(s) | 606 |
| BccI | CCATC | 1 cut(s) | 168 |
| BceAI | ACGGC | 3 cut(s) | 77, 370, 432 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BcnI | CCSGG | 2 cut(s) | 138, 512 |
| BfaI | CTAG | 1 cut(s) | 420 |
| BfuAI | ACCTGC | 1 cut(s) | 619 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 37 |
| BisI | GCNGC | 1 cut(s) | 620 |
| BlsI | GCNGC | 1 cut(s) | 621 |
| Bme1390I | CCNGG | 2 cut(s) | 138, 512 |
| BmeT110I | CYCGRG | 2 cut(s) | 587, 599 |
| BmgT120I | GGNCC | 2 cut(s) | 356, 542 |
| BmiI | GGNNCC | 6 cut(s) | 142, 153, 509, 561, 578, 593 |
| BmrFI | CCNGG | 2 cut(s) | 138, 512 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 236, 268 |
| BpuMI | CCSGG | 2 cut(s) | 138, 512 |
| Bsa29I | ATCGAT | 1 cut(s) | 462 |
| BsaBI | GATNNNNATC | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 3 cut(s) | 70, 563, 636 |
| BsaWI | WCCGGW | 1 cut(s) | 536 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 322, 352 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 364, 587 |
| Bse118I | RCCGGY | 3 cut(s) | 148, 536, 668 |
| Bse3DI | GCAATG | 1 cut(s) | 581 |
| Bse8I | GATNNNNATC | 1 cut(s) | 372 |
| BseCI | ATCGAT | 1 cut(s) | 462 |
| BseDI | CCNNGG | 3 cut(s) | 70, 563, 636 |
| BseGI | GGATG | 3 cut(s) | 160, 373, 520 |
| BseJI | GATNNNNATC | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 364, 587 |
| BseMI | GCAATG | 1 cut(s) | 581 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 1 cut(s) | 606 |
| Bsh1285I | CGRYCG | 2 cut(s) | 110, 333 |
| BshFI | GGCC | 3 cut(s) | 92, 357, 544 |
| BshTI | ACCGGT | 1 cut(s) | 536 |
| BshVI | ATCGAT | 1 cut(s) | 462 |
| BsiEI | CGRYCG | 2 cut(s) | 110, 333 |
| BsiHKCI | CYCGRG | 2 cut(s) | 587, 599 |
| BsiSI | CCGG | 6 cut(s) | 137, 149, 512, 537, 557, 669 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 364, 587 |
| BsnI | GGCC | 3 cut(s) | 92, 357, 544 |
| BsoBI | CYCGRG | 2 cut(s) | 587, 599 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 4 cut(s) | 15, 373, 459, 463 |
| BspACI | CCGC | 6 cut(s) | 67, 83, 106, 365, 485, 666 |
| BspANI | GGCC | 3 cut(s) | 92, 357, 544 |
| BspDI | ATCGAT | 1 cut(s) | 462 |
| BspLI | GGNNCC | 6 cut(s) | 142, 153, 509, 561, 578, 593 |
| BspMI | ACCTGC | 1 cut(s) | 619 |
| BsrDI | GCAATG | 1 cut(s) | 581 |
| BsrFI | RCCGGY | 3 cut(s) | 148, 536, 668 |
| BssAI | RCCGGY | 3 cut(s) | 148, 536, 668 |
| BssECI | CCNNGG | 3 cut(s) | 70, 563, 636 |
| BssMI | GATC | 4 cut(s) | 15, 373, 459, 463 |
| BssNAI | GTATAC | 1 cut(s) | 501 |
| BssT1I | CCWWGG | 1 cut(s) | 563 |
| Bst1107I | GTATAC | 1 cut(s) | 501 |
| BstC8I | GCNNGC | 4 cut(s) | 67, 81, 670, 674 |
| BstDEI | CTNAG | 1 cut(s) | 98 |
| BstEII | GGTNACC | 1 cut(s) | 631 |
| BstF5I | GGATG | 3 cut(s) | 160, 373, 520 |
| BstHHI | GCGC | 1 cut(s) | 65 |
| BstKTI | GATC | 4 cut(s) | 18, 376, 462, 466 |
| BstMBI | GATC | 4 cut(s) | 15, 373, 459, 463 |
| BstMCI | CGRYCG | 2 cut(s) | 110, 333 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 37, 89, 103, 409, 625 |
| BstNSI | RCATGY | 1 cut(s) | 178 |
| BstPI | GGTNACC | 1 cut(s) | 631 |
| BstSCI | CCNGG | 2 cut(s) | 136, 510 |
| BstV1I | GCAGC | 1 cut(s) | 606 |
| BstZ17I | GTATAC | 1 cut(s) | 501 |
| Bsu15I | ATCGAT | 1 cut(s) | 462 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BsuRI | GGCC | 3 cut(s) | 92, 357, 544 |
| BsuTUI | ATCGAT | 1 cut(s) | 462 |
| BtsCI | GGATG | 3 cut(s) | 160, 373, 520 |
| BveI | ACCTGC | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 4 cut(s) | 67, 81, 670, 674 |
| CfoI | GCGC | 1 cut(s) | 65 |
| Cfr10I | RCCGGY | 3 cut(s) | 148, 536, 668 |
| Cfr13I | GGNCC | 2 cut(s) | 356, 542 |
| ClaI | ATCGAT | 1 cut(s) | 462 |
| CspAI | ACCGGT | 1 cut(s) | 536 |
| CviAII | CATG | 2 cut(s) | 175, 571 |
| DdeI | CTNAG | 1 cut(s) | 98 |
| DpnI | GATC | 4 cut(s) | 17, 375, 461, 465 |
| DpnII | GATC | 4 cut(s) | 15, 373, 459, 463 |
| Eco130I | CCWWGG | 1 cut(s) | 563 |
| Eco24I | GRGCYC | 1 cut(s) | 143 |
| Eco88I | CYCGRG | 2 cut(s) | 587, 599 |
| Eco91I | GGTNACC | 1 cut(s) | 631 |
| EcoO65I | GGTNACC | 1 cut(s) | 631 |
| EcoT14I | CCWWGG | 1 cut(s) | 563 |
| EcoT22I | ATGCAT | 1 cut(s) | 180 |
| EcoT38I | GRGCYC | 1 cut(s) | 143 |
| ErhI | CCWWGG | 1 cut(s) | 563 |
| FaeI | CATG | 2 cut(s) | 178, 574 |
| FatI | CATG | 2 cut(s) | 174, 570 |
| FauI | CCCGC | 3 cut(s) | 74, 76, 673 |
| FauNDI | CATATG | 1 cut(s) | 361 |
| FblI | GTMKAC | 1 cut(s) | 500 |
| Fnu4HI | GCNGC | 1 cut(s) | 620 |
| FokI | GGATG | 3 cut(s) | 147, 380, 527 |
| FriOI | GRGCYC | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 1 cut(s) | 620 |
| FspBI | CTAG | 1 cut(s) | 420 |
| GlaI | GCGC | 1 cut(s) | 64 |
| GluI | GCNGC | 1 cut(s) | 620 |
| HaeIII | GGCC | 3 cut(s) | 92, 357, 544 |
| HapII | CCGG | 6 cut(s) | 137, 149, 512, 537, 557, 669 |
| HhaI | GCGC | 1 cut(s) | 65 |
| Hin1II | CATG | 2 cut(s) | 178, 574 |
| Hin6I | GCGC | 1 cut(s) | 63 |
| HinP1I | GCGC | 1 cut(s) | 63 |
| HincII | GTYRAC | 1 cut(s) | 430 |
| HindII | GTYRAC | 1 cut(s) | 430 |
| HinfI | GANTC | 2 cut(s) | 119, 407 |
| HpaII | CCGG | 6 cut(s) | 137, 149, 512, 537, 557, 669 |
| HphI | GGTGA | 4 cut(s) | 254, 474, 625, 659 |
| Hpy166II | GTNNAC | 2 cut(s) | 430, 501 |
| Hpy188I | TCNGA | 5 cut(s) | 124, 145, 207, 342, 525 |
| Hpy188III | TCNNGA | 5 cut(s) | 46, 377, 443, 589, 601 |
| Hpy8I | GTNNAC | 2 cut(s) | 430, 501 |
| Hpy99I | CGWCG | 1 cut(s) | 356 |
| HpyAV | CCTTC | 2 cut(s) | 82, 543 |
| HpyCH4IV | ACGT | 1 cut(s) | 660 |
| HpyCH4V | TGCA | 2 cut(s) | 178, 628 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 37, 89, 103, 409, 625 |
| HpyF3I | CTNAG | 1 cut(s) | 98 |
| HpySE526I | ACGT | 1 cut(s) | 660 |
| Hsp92II | CATG | 2 cut(s) | 178, 574 |
| HspAI | GCGC | 1 cut(s) | 63 |
| KroI | GCCGGC | 1 cut(s) | 668 |
| KroNI | GCCGGC | 1 cut(s) | 670 |
| Kzo9I | GATC | 4 cut(s) | 15, 373, 459, 463 |
| LmnI | GCTCC | 5 cut(s) | 10, 146, 343, 559, 616 |
| LpnPI | CCDG | 8 cut(s) | 65, 150, 162, 525, 550, 570, 608, 614 |
| Lsp1109I | GCAGC | 1 cut(s) | 606 |
| MaeI | CTAG | 1 cut(s) | 420 |
| MaeII | ACGT | 1 cut(s) | 660 |
| MaeIII | GTNAC | 2 cut(s) | 480, 631 |
| MalI | GATC | 4 cut(s) | 17, 375, 461, 465 |
| MboI | GATC | 4 cut(s) | 15, 373, 459, 463 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MluCI | AATT | 1 cut(s) | 169 |
| MmeI | TCCRAC | 1 cut(s) | 179 |
| MnlI | CCTC | 7 cut(s) | 65, 225, 238, 498, 567, 597, 631 |
| Mph1103I | ATGCAT | 1 cut(s) | 180 |
| MroNI | GCCGGC | 1 cut(s) | 668 |
| MslI | CAYNNNNRTG | 2 cut(s) | 183, 638 |
| MspI | CCGG | 6 cut(s) | 137, 149, 512, 537, 557, 669 |
| MspR9I | CCNGG | 2 cut(s) | 138, 512 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 37, 89, 103, 409, 625 |
| NaeI | GCCGGC | 1 cut(s) | 670 |
| NciI | CCSGG | 2 cut(s) | 138, 512 |
| NdeI | CATATG | 1 cut(s) | 361 |
| NdeII | GATC | 4 cut(s) | 15, 373, 459, 463 |
| NgoMIV | GCCGGC | 1 cut(s) | 668 |
| NlaIII | CATG | 2 cut(s) | 178, 574 |
| NlaIV | GGNNCC | 6 cut(s) | 142, 153, 509, 561, 578, 593 |
| NmeAIII | GCCGAG | 2 cut(s) | 95, 570 |
| NmuCI | GTSAC | 2 cut(s) | 480, 631 |
| NsiI | ATGCAT | 1 cut(s) | 180 |
| NspI | RCATGY | 1 cut(s) | 178 |
| OliI | CACNNNNGTG | 1 cut(s) | 638 |
| PaeR7I | CTCGAG | 1 cut(s) | 599 |
| PdiI | GCCGGC | 1 cut(s) | 670 |
| PfeI | GAWTC | 2 cut(s) | 119, 407 |
| PfoI | TCCNGGA | 1 cut(s) | 510 |
| PinAI | ACCGGT | 1 cut(s) | 536 |
| PkrI | GCNGC | 1 cut(s) | 621 |
| PspEI | GGTNACC | 1 cut(s) | 631 |
| PspN4I | GGNNCC | 6 cut(s) | 142, 153, 509, 561, 578, 593 |
| PspPI | GGNCC | 2 cut(s) | 356, 542 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 491, 523 |
| RseI | CAYNNNNRTG | 2 cut(s) | 183, 638 |
| SatI | GCNGC | 1 cut(s) | 620 |
| Sau3AI | GATC | 4 cut(s) | 15, 373, 459, 463 |
| Sau96I | GGNCC | 2 cut(s) | 356, 542 |
| ScrFI | CCNGG | 2 cut(s) | 138, 512 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| Sfr274I | CTCGAG | 1 cut(s) | 599 |
| SlaI | CTCGAG | 1 cut(s) | 599 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 183, 638 |
| SmlI | CTYRAG | 1 cut(s) | 599 |
| SmoI | CTYRAG | 1 cut(s) | 599 |
| Sse9I | AATT | 1 cut(s) | 169 |
| SsiI | CCGC | 6 cut(s) | 67, 83, 106, 365, 485, 666 |
| SspMI | CTAG | 1 cut(s) | 420 |
| StyD4I | CCNGG | 2 cut(s) | 136, 510 |
| StyI | CCWWGG | 1 cut(s) | 563 |
| TaiI | ACGT | 1 cut(s) | 663 |
| TaqI | TCGA | 2 cut(s) | 462, 600 |
| TaqII | GACCGA | 1 cut(s) | 347 |
| TasI | AATT | 1 cut(s) | 169 |
| TfiI | GAWTC | 2 cut(s) | 119, 407 |
| TseFI | GTSAC | 2 cut(s) | 480, 631 |
| TseI | GCWGC | 1 cut(s) | 619 |
| Tsp45I | GTSAC | 2 cut(s) | 480, 631 |
| TspGWI | ACGGA | 1 cut(s) | 304 |
| XceI | RCATGY | 1 cut(s) | 178 |
| XhoI | CTCGAG | 1 cut(s) | 599 |
| XmiI | GTMKAC | 1 cut(s) | 500 |
| XspI | CTAG | 1 cut(s) | 420 |
| Zsp2I | ATGCAT | 1 cut(s) | 180 |