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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 320 |
| AccB1I | GGYRCC | 1 cut(s) | 703 |
| AccII | CGCG | 3 cut(s) | 78, 112, 360 |
| AciI | CCGC | 3 cut(s) | 76, 78, 671 |
| AclWI | GGATC | 2 cut(s) | 197, 693 |
| AdeI | CACNNNGTG | 1 cut(s) | 13 |
| AfeI | AGCGCT | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 474, 475 |
| AflII | CTTAAG | 1 cut(s) | 647 |
| AgsI | TTSAA | 2 cut(s) | 329, 713 |
| AluBI | AGCT | 4 cut(s) | 295, 505, 566, 646 |
| AluI | AGCT | 4 cut(s) | 295, 505, 566, 646 |
| Alw21I | GWGCWC | 1 cut(s) | 18 |
| Alw26I | GTCTC | 3 cut(s) | 30, 441, 623 |
| AlwI | GGATC | 2 cut(s) | 197, 693 |
| Ama87I | CYCGRG | 2 cut(s) | 134, 579 |
| Aor51HI | AGCGCT | 1 cut(s) | 420 |
| AoxI | GGCC | 2 cut(s) | 465, 729 |
| ApeKI | GCWGC | 1 cut(s) | 505 |
| AspLEI | GCGC | 4 cut(s) | 114, 321, 360, 421 |
| AspS9I | GGNCC | 1 cut(s) | 466 |
| AsuC2I | CCSGG | 1 cut(s) | 499 |
| AsuHPI | GGTGA | 2 cut(s) | 15, 302 |
| AvaI | CYCGRG | 2 cut(s) | 134, 579 |
| BanI | GGYRCC | 1 cut(s) | 703 |
| BanII | GRGCYC | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 599 |
| Bbv12I | GWGCWC | 1 cut(s) | 18 |
| BbvI | GCAGC | 1 cut(s) | 492 |
| BccI | CCATC | 3 cut(s) | 191, 397, 535 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 125, 159, 560, 594 |
| BcnI | CCSGG | 1 cut(s) | 499 |
| BcoDI | GTCTC | 3 cut(s) | 30, 441, 623 |
| BfaI | CTAG | 2 cut(s) | 585, 754 |
| BfoI | RGCGCY | 1 cut(s) | 422 |
| BfrI | CTTAAG | 1 cut(s) | 647 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 458 |
| BisI | GCNGC | 1 cut(s) | 506 |
| BlpI | GCTNAGC | 1 cut(s) | 567 |
| BlsI | GCNGC | 1 cut(s) | 507 |
| Bme1390I | CCNGG | 1 cut(s) | 499 |
| BmeT110I | CYCGRG | 2 cut(s) | 134, 579 |
| BmgT120I | GGNCC | 1 cut(s) | 466 |
| BmiI | GGNNCC | 4 cut(s) | 46, 202, 468, 705 |
| BmrFI | CCNGG | 1 cut(s) | 499 |
| BmrI | ACTGGG | 1 cut(s) | 47 |
| BmsI | GCATC | 1 cut(s) | 439 |
| BmuI | ACTGGG | 1 cut(s) | 47 |
| BpiI | GAAGAC | 1 cut(s) | 599 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 2 cut(s) | 275, 680 |
| BpuMI | CCSGG | 1 cut(s) | 499 |
| BsaBI | GATNNNNATC | 2 cut(s) | 188, 690 |
| BsaI | GGTCTC | 1 cut(s) | 623 |
| BsaJI | CCNNGG | 2 cut(s) | 76, 343 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 29, 59 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 474, 475 |
| Bse1I | ACTGG | 1 cut(s) | 53 |
| Bse8I | GATNNNNATC | 2 cut(s) | 188, 690 |
| BseDI | CCNNGG | 2 cut(s) | 76, 343 |
| BseGI | GGATG | 1 cut(s) | 408 |
| BseJI | GATNNNNATC | 2 cut(s) | 188, 690 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 474, 475 |
| BseMII | CTCAG | 4 cut(s) | 207, 542, 558, 618 |
| BseNI | ACTGG | 1 cut(s) | 53 |
| BseRI | GAGGAG | 2 cut(s) | 446, 614 |
| BseXI | GCAGC | 1 cut(s) | 492 |
| Bsh1236I | CGCG | 3 cut(s) | 78, 112, 360 |
| BshFI | GGCC | 2 cut(s) | 467, 731 |
| BshNI | GGYRCC | 1 cut(s) | 703 |
| BsiHKAI | GWGCWC | 1 cut(s) | 18 |
| BsiHKCI | CYCGRG | 2 cut(s) | 134, 579 |
| BsiSI | CCGG | 1 cut(s) | 498 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 474, 475 |
| BsmAI | GTCTC | 3 cut(s) | 30, 441, 623 |
| BsmI | GAATGC | 1 cut(s) | 304 |
| BsnI | GGCC | 2 cut(s) | 467, 731 |
| Bso31I | GGTCTC | 1 cut(s) | 623 |
| BsoBI | CYCGRG | 2 cut(s) | 134, 579 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 94 |
| Bsp143I | GATC | 2 cut(s) | 189, 685 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 567 |
| BspACI | CCGC | 3 cut(s) | 76, 78, 671 |
| BspANI | GGCC | 2 cut(s) | 467, 731 |
| BspCNI | CTCAG | 4 cut(s) | 206, 543, 559, 619 |
| BspFNI | CGCG | 3 cut(s) | 78, 112, 360 |
| BspLI | GGNNCC | 4 cut(s) | 46, 202, 468, 705 |
| BspPI | GGATC | 2 cut(s) | 197, 693 |
| BspT107I | GGYRCC | 1 cut(s) | 703 |
| BspTI | CTTAAG | 1 cut(s) | 647 |
| BspTNI | GGTCTC | 1 cut(s) | 623 |
| BsrI | ACTGG | 1 cut(s) | 53 |
| BssECI | CCNNGG | 2 cut(s) | 76, 343 |
| BssMI | GATC | 2 cut(s) | 189, 685 |
| Bst4CI | ACNGT | 1 cut(s) | 344 |
| BstAFI | CTTAAG | 1 cut(s) | 647 |
| BstC8I | GCNNGC | 4 cut(s) | 167, 417, 423, 618 |
| BstDEI | CTNAG | 5 cut(s) | 193, 303, 551, 567, 627 |
| BstDSI | CCRYGG | 2 cut(s) | 76, 343 |
| BstF5I | GGATG | 1 cut(s) | 408 |
| BstFNI | CGCG | 3 cut(s) | 78, 112, 360 |
| BstH2I | RGCGCY | 1 cut(s) | 422 |
| BstHHI | GCGC | 4 cut(s) | 114, 321, 360, 421 |
| BstKTI | GATC | 2 cut(s) | 192, 688 |
| BstMAI | GTCTC | 3 cut(s) | 30, 441, 623 |
| BstMBI | GATC | 2 cut(s) | 189, 685 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 292, 458, 677 |
| BstSCI | CCNGG | 1 cut(s) | 497 |
| BstUI | CGCG | 3 cut(s) | 78, 112, 360 |
| BstV1I | GCAGC | 1 cut(s) | 492 |
| BstV2I | GAAGAC | 1 cut(s) | 599 |
| BstX2I | RGATCY | 2 cut(s) | 189, 685 |
| BstYI | RGATCY | 2 cut(s) | 189, 685 |
| BsuRI | GGCC | 2 cut(s) | 467, 731 |
| BtgI | CCRYGG | 2 cut(s) | 76, 343 |
| BtsCI | GGATG | 1 cut(s) | 408 |
| BtsI | GCAGTG | 1 cut(s) | 687 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 687 |
| Cac8I | GCNNGC | 4 cut(s) | 167, 417, 423, 618 |
| CfoI | GCGC | 4 cut(s) | 114, 321, 360, 421 |
| Cfr13I | GGNCC | 1 cut(s) | 466 |
| Cfr42I | CCGCGG | 1 cut(s) | 79 |
| CviAII | CATG | 4 cut(s) | 214, 226, 487, 635 |
| DdeI | CTNAG | 5 cut(s) | 193, 303, 551, 567, 627 |
| DpnI | GATC | 2 cut(s) | 191, 687 |
| DpnII | GATC | 2 cut(s) | 189, 685 |
| DraIII | CACNNNGTG | 1 cut(s) | 13 |
| Eco147I | AGGCCT | 1 cut(s) | 731 |
| Eco24I | GRGCYC | 1 cut(s) | 94 |
| Eco31I | GGTCTC | 1 cut(s) | 623 |
| Eco47III | AGCGCT | 1 cut(s) | 420 |
| Eco88I | CYCGRG | 2 cut(s) | 134, 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 94 |
| FaeI | CATG | 4 cut(s) | 217, 229, 490, 638 |
| FaiI | YATR | 7 cut(s) | 119, 215, 227, 368, 488, 636, 691 |
| FatI | CATG | 4 cut(s) | 213, 225, 486, 634 |
| FauI | CCCGC | 1 cut(s) | 83 |
| Fnu4HI | GCNGC | 1 cut(s) | 506 |
| FokI | GGATG | 1 cut(s) | 415 |
| FriOI | GRGCYC | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 1 cut(s) | 506 |
| FspBI | CTAG | 2 cut(s) | 585, 754 |
| FspI | TGCGCA | 1 cut(s) | 320 |
| GlaI | GCGC | 4 cut(s) | 113, 320, 359, 420 |
| GluI | GCNGC | 1 cut(s) | 506 |
| HaeII | RGCGCY | 1 cut(s) | 422 |
| HaeIII | GGCC | 2 cut(s) | 467, 731 |
| HapII | CCGG | 1 cut(s) | 498 |
| HhaI | GCGC | 4 cut(s) | 114, 321, 360, 421 |
| Hin1II | CATG | 4 cut(s) | 217, 229, 490, 638 |
| Hin6I | GCGC | 4 cut(s) | 112, 319, 358, 419 |
| HinP1I | GCGC | 4 cut(s) | 112, 319, 358, 419 |
| HindIII | AAGCTT | 1 cut(s) | 644 |
| HinfI | GANTC | 3 cut(s) | 434, 479, 577 |
| HpaII | CCGG | 1 cut(s) | 498 |
| HphI | GGTGA | 2 cut(s) | 15, 302 |
| Hpy166II | GTNNAC | 1 cut(s) | 223 |
| Hpy188I | TCNGA | 2 cut(s) | 196, 739 |
| Hpy188III | TCNNGA | 3 cut(s) | 134, 329, 713 |
| Hpy8I | GTNNAC | 1 cut(s) | 223 |
| Hpy99I | CGWCG | 1 cut(s) | 151 |
| HpyAV | CCTTC | 5 cut(s) | 393, 451, 515, 550, 742 |
| HpyCH4III | ACNGT | 1 cut(s) | 344 |
| HpyCH4V | TGCA | 5 cut(s) | 169, 211, 286, 508, 751 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 292, 458, 677 |
| HpyF3I | CTNAG | 5 cut(s) | 193, 303, 551, 567, 627 |
| Hsp92II | CATG | 4 cut(s) | 217, 229, 490, 638 |
| HspAI | GCGC | 4 cut(s) | 112, 319, 358, 419 |
| KspI | CCGCGG | 1 cut(s) | 79 |
| Kzo9I | GATC | 2 cut(s) | 189, 685 |
| LmnI | GCTCC | 5 cut(s) | 50, 119, 355, 412, 544 |
| LpnPI | CCDG | 4 cut(s) | 61, 66, 80, 511 |
| Lsp1109I | GCAGC | 1 cut(s) | 492 |
| LweI | GCATC | 1 cut(s) | 439 |
| MaeI | CTAG | 2 cut(s) | 585, 754 |
| MaeIII | GTNAC | 2 cut(s) | 3, 587 |
| MalI | GATC | 2 cut(s) | 191, 687 |
| MboI | GATC | 2 cut(s) | 189, 685 |
| MboII | GAAGA | 2 cut(s) | 317, 599 |
| MfeI | CAATTG | 1 cut(s) | 378 |
| MflI | RGATCY | 2 cut(s) | 189, 685 |
| MhlI | GDGCHC | 2 cut(s) | 18, 94 |
| MluCI | AATT | 1 cut(s) | 378 |
| MlyI | GAGTC | 3 cut(s) | 443, 488, 571 |
| MmeI | TCCRAC | 1 cut(s) | 390 |
| MseI | TTAA | 3 cut(s) | 63, 338, 648 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| MspA1I | CMGCKG | 1 cut(s) | 78 |
| MspCI | CTTAAG | 1 cut(s) | 647 |
| MspI | CCGG | 1 cut(s) | 498 |
| MspR9I | CCNGG | 1 cut(s) | 499 |
| MunI | CAATTG | 1 cut(s) | 378 |
| Mva1269I | GAATGC | 1 cut(s) | 304 |
| MvnI | CGCG | 3 cut(s) | 78, 112, 360 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 292, 458, 677 |
| NciI | CCSGG | 1 cut(s) | 499 |
| NdeII | GATC | 2 cut(s) | 189, 685 |
| NlaIII | CATG | 4 cut(s) | 217, 229, 490, 638 |
| NlaIV | GGNNCC | 4 cut(s) | 46, 202, 468, 705 |
| NmeAIII | GCCGAG | 2 cut(s) | 59, 478 |
| NmuCI | GTSAC | 2 cut(s) | 3, 587 |
| NsbI | TGCGCA | 1 cut(s) | 320 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PceI | AGGCCT | 1 cut(s) | 731 |
| PctI | GAATGC | 1 cut(s) | 304 |
| PkrI | GCNGC | 1 cut(s) | 507 |
| PleI | GAGTC | 3 cut(s) | 442, 487, 571 |
| PpsI | GAGTC | 3 cut(s) | 442, 487, 571 |
| PspN4I | GGNNCC | 4 cut(s) | 46, 202, 468, 705 |
| PspPI | GGNCC | 1 cut(s) | 466 |
| PsuI | RGATCY | 2 cut(s) | 189, 685 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SacII | CCGCGG | 1 cut(s) | 79 |
| SaqAI | TTAA | 3 cut(s) | 63, 338, 648 |
| SatI | GCNGC | 1 cut(s) | 506 |
| Sau3AI | GATC | 2 cut(s) | 189, 685 |
| Sau96I | GGNCC | 1 cut(s) | 466 |
| SchI | GAGTC | 3 cut(s) | 443, 488, 571 |
| ScrFI | CCNGG | 1 cut(s) | 499 |
| SduI | GDGCHC | 2 cut(s) | 18, 94 |
| SetI | ASST | 9 cut(s) | 85, 141, 155, 292, 297, 374, 507, 568, 648 |
| SfaNI | GCATC | 1 cut(s) | 439 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| Sfr303I | CCGCGG | 1 cut(s) | 79 |
| SgrBI | CCGCGG | 1 cut(s) | 79 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 4 cut(s) | 134, 254, 647, 695 |
| SmoI | CTYRAG | 4 cut(s) | 134, 254, 647, 695 |
| Sse9I | AATT | 1 cut(s) | 378 |
| SseBI | AGGCCT | 1 cut(s) | 731 |
| SsiI | CCGC | 3 cut(s) | 76, 78, 671 |
| SspMI | CTAG | 2 cut(s) | 585, 754 |
| StuI | AGGCCT | 1 cut(s) | 731 |
| StyD4I | CCNGG | 1 cut(s) | 497 |
| TaaI | ACNGT | 1 cut(s) | 344 |
| TaqI | TCGA | 3 cut(s) | 69, 135, 610 |
| TasI | AATT | 1 cut(s) | 378 |
| Tru1I | TTAA | 3 cut(s) | 63, 338, 648 |
| Tru9I | TTAA | 3 cut(s) | 63, 338, 648 |
| TscAI | CASTG | 2 cut(s) | 60, 687 |
| TseFI | GTSAC | 2 cut(s) | 3, 587 |
| TseI | GCWGC | 1 cut(s) | 505 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 587 |
| TspDTI | ATGAA | 1 cut(s) | 242 |
| TspRI | CASTG | 2 cut(s) | 60, 687 |
| Vha464I | CTTAAG | 1 cut(s) | 647 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 211 |
| XhoI | CTCGAG | 1 cut(s) | 134 |
| XspI | CTAG | 2 cut(s) | 585, 754 |