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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 119, 331 |
| AciI | CCGC | 5 cut(s) | 119, 258, 412, 422, 431 |
| AclWI | GGATC | 4 cut(s) | 62, 149, 162, 210 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 196 |
| AgsI | TTSAA | 1 cut(s) | 463 |
| AluBI | AGCT | 3 cut(s) | 73, 287, 397 |
| AluI | AGCT | 3 cut(s) | 73, 287, 397 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| AlwI | GGATC | 4 cut(s) | 62, 149, 162, 210 |
| Ama87I | CYCGRG | 1 cut(s) | 190 |
| AoxI | GGCC | 3 cut(s) | 187, 213, 452 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 357 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AspS9I | GGNCC | 7 cut(s) | 4, 188, 213, 246, 260, 436, 453 |
| AsuC2I | CCSGG | 2 cut(s) | 217, 250 |
| AvaI | CYCGRG | 1 cut(s) | 190 |
| AvaII | GGWCC | 4 cut(s) | 4, 246, 260, 436 |
| BamHI | GGATCC | 1 cut(s) | 154 |
| BanII | GRGCYC | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BccI | CCATC | 3 cut(s) | 61, 179, 410 |
| BceAI | ACGGC | 1 cut(s) | 25 |
| BcnI | CCSGG | 2 cut(s) | 217, 250 |
| BfaI | CTAG | 2 cut(s) | 74, 408 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 250 |
| Bme18I | GGWCC | 4 cut(s) | 4, 246, 260, 436 |
| BmeT110I | CYCGRG | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 7 cut(s) | 4, 188, 213, 246, 260, 436, 453 |
| BmiI | GGNNCC | 3 cut(s) | 156, 248, 316 |
| BmrFI | CCNGG | 2 cut(s) | 217, 250 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 299, 331 |
| BpuMI | CCSGG | 2 cut(s) | 217, 250 |
| BsaJI | CCNNGG | 4 cut(s) | 7, 137, 191, 301 |
| BsaWI | WCCGGW | 1 cut(s) | 446 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 428, 458 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 196 |
| Bse3DI | GCAATG | 1 cut(s) | 369 |
| BseDI | CCNNGG | 4 cut(s) | 7, 137, 191, 301 |
| BseGI | GGATG | 3 cut(s) | 72, 190, 421 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseMI | GCAATG | 1 cut(s) | 369 |
| Bsh1236I | CGCG | 2 cut(s) | 119, 331 |
| Bsh1285I | CGRYCG | 2 cut(s) | 329, 451 |
| BshFI | GGCC | 3 cut(s) | 189, 215, 454 |
| BsiEI | CGRYCG | 2 cut(s) | 329, 451 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BsiHKCI | CYCGRG | 1 cut(s) | 190 |
| BsiSI | CCGG | 3 cut(s) | 216, 250, 447 |
| BslFI | GGGAC | 1 cut(s) | 404 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BsmFI | GGGAC | 1 cut(s) | 404 |
| BsmI | GAATGC | 3 cut(s) | 273, 357, 359 |
| BsnI | GGCC | 3 cut(s) | 189, 215, 454 |
| BsoBI | CYCGRG | 1 cut(s) | 190 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| Bsp143I | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| BspACI | CCGC | 5 cut(s) | 119, 258, 412, 422, 431 |
| BspANI | GGCC | 3 cut(s) | 189, 215, 454 |
| BspFNI | CGCG | 2 cut(s) | 119, 331 |
| BspLI | GGNNCC | 3 cut(s) | 156, 248, 316 |
| BspPI | GGATC | 4 cut(s) | 62, 149, 162, 210 |
| BspQI | GCTCTTC | 1 cut(s) | 227 |
| BsrDI | GCAATG | 1 cut(s) | 369 |
| BssECI | CCNNGG | 4 cut(s) | 7, 137, 191, 301 |
| BssMI | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| BssT1I | CCWWGG | 1 cut(s) | 301 |
| Bst6I | CTCTTC | 2 cut(s) | 90, 227 |
| BstDEI | CTNAG | 1 cut(s) | 162 |
| BstDSI | CCRYGG | 1 cut(s) | 7 |
| BstF5I | GGATG | 3 cut(s) | 72, 190, 421 |
| BstFNI | CGCG | 2 cut(s) | 119, 331 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 5 cut(s) | 57, 83, 157, 205, 329 |
| BstMBI | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| BstMCI | CGRYCG | 2 cut(s) | 329, 451 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 428 |
| BstSCI | CCNGG | 2 cut(s) | 215, 248 |
| BstUI | CGCG | 2 cut(s) | 119, 331 |
| BstX2I | RGATCY | 1 cut(s) | 154 |
| BstYI | RGATCY | 1 cut(s) | 154 |
| BsuRI | GGCC | 3 cut(s) | 189, 215, 454 |
| BtgI | CCRYGG | 1 cut(s) | 7 |
| BtgZI | GCGATG | 1 cut(s) | 286 |
| BtsCI | GGATG | 3 cut(s) | 72, 190, 421 |
| CfoI | GCGC | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 7 cut(s) | 4, 188, 213, 246, 260, 436, 453 |
| CpoI | CGGWCCG | 1 cut(s) | 260 |
| CspI | CGGWCCG | 1 cut(s) | 260 |
| CviJI | RGCY | 9 cut(s) | 73, 101, 189, 215, 287, 315, 397, 407, 454 |
| CviKI_1 | RGCY | 9 cut(s) | 73, 101, 189, 215, 287, 315, 397, 407, 454 |
| DdeI | CTNAG | 1 cut(s) | 162 |
| DpnI | GATC | 5 cut(s) | 56, 82, 156, 204, 328 |
| DpnII | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| Eam1104I | CTCTTC | 2 cut(s) | 90, 227 |
| EarI | CTCTTC | 2 cut(s) | 90, 227 |
| Ecl136II | GAGCTC | 1 cut(s) | 287 |
| Eco130I | CCWWGG | 1 cut(s) | 301 |
| Eco24I | GRGCYC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 4 cut(s) | 4, 246, 260, 436 |
| Eco53kI | GAGCTC | 1 cut(s) | 287 |
| Eco88I | CYCGRG | 1 cut(s) | 190 |
| EcoICRI | GAGCTC | 1 cut(s) | 287 |
| EcoO109I | RGGNCCY | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 301 |
| EcoT22I | ATGCAT | 1 cut(s) | 359 |
| EcoT38I | GRGCYC | 1 cut(s) | 289 |
| ErhI | CCWWGG | 1 cut(s) | 301 |
| FaiI | YATR | 4 cut(s) | 32, 92, 241, 385 |
| FaqI | GGGAC | 1 cut(s) | 404 |
| FauI | CCCGC | 2 cut(s) | 112, 405 |
| FokI | GGATG | 3 cut(s) | 79, 197, 428 |
| FriOI | GRGCYC | 1 cut(s) | 289 |
| FspBI | CTAG | 2 cut(s) | 74, 408 |
| GlaI | GCGC | 1 cut(s) | 171 |
| HaeIII | GGCC | 3 cut(s) | 189, 215, 454 |
| HapII | CCGG | 3 cut(s) | 216, 250, 447 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HindIII | AAGCTT | 1 cut(s) | 395 |
| HpaII | CCGG | 3 cut(s) | 216, 250, 447 |
| Hpy166II | GTNNAC | 1 cut(s) | 436 |
| Hpy188I | TCNGA | 2 cut(s) | 159, 264 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 324, 389, 463 |
| Hpy8I | GTNNAC | 1 cut(s) | 436 |
| Hpy99I | CGWCG | 1 cut(s) | 108 |
| HpyAV | CCTTC | 2 cut(s) | 44, 160 |
| HpyCH4V | TGCA | 1 cut(s) | 357 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 428 |
| HpyF3I | CTNAG | 1 cut(s) | 162 |
| HspAI | GCGC | 1 cut(s) | 170 |
| Kzo9I | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| LguI | GCTCTTC | 1 cut(s) | 227 |
| LmnI | GCTCC | 4 cut(s) | 70, 284, 292, 320 |
| LpnPI | CCDG | 4 cut(s) | 229, 263, 335, 460 |
| MaeI | CTAG | 2 cut(s) | 74, 408 |
| MalI | GATC | 5 cut(s) | 56, 82, 156, 204, 328 |
| MboI | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| MboII | GAAGA | 2 cut(s) | 107, 244 |
| MflI | RGATCY | 1 cut(s) | 154 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 1 cut(s) | 42 |
| MmeI | TCCRAC | 2 cut(s) | 182, 262 |
| Mph1103I | ATGCAT | 1 cut(s) | 359 |
| MroXI | GAANNNNTTC | 1 cut(s) | 357 |
| MspI | CCGG | 3 cut(s) | 216, 250, 447 |
| MspR9I | CCNGG | 2 cut(s) | 217, 250 |
| Mva1269I | GAATGC | 3 cut(s) | 273, 357, 359 |
| MvnI | CGCG | 2 cut(s) | 119, 331 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 428 |
| NciI | CCSGG | 2 cut(s) | 217, 250 |
| NdeII | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| NlaIV | GGNNCC | 3 cut(s) | 156, 248, 316 |
| NsiI | ATGCAT | 1 cut(s) | 359 |
| PciSI | GCTCTTC | 1 cut(s) | 227 |
| PctI | GAATGC | 3 cut(s) | 273, 357, 359 |
| PdmI | GAANNNNTTC | 1 cut(s) | 357 |
| Ple19I | CGATCG | 1 cut(s) | 329 |
| PpuMI | RGGWCCY | 1 cut(s) | 246 |
| Psp124BI | GAGCTC | 1 cut(s) | 289 |
| Psp5II | RGGWCCY | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 3 cut(s) | 156, 248, 316 |
| PspPI | GGNCC | 7 cut(s) | 4, 188, 213, 246, 260, 436, 453 |
| PspPPI | RGGWCCY | 1 cut(s) | 246 |
| PsuI | RGATCY | 1 cut(s) | 154 |
| PvuI | CGATCG | 1 cut(s) | 329 |
| Rsr2I | CGGWCCG | 1 cut(s) | 260 |
| RsrII | CGGWCCG | 1 cut(s) | 260 |
| SacI | GAGCTC | 1 cut(s) | 289 |
| SapI | GCTCTTC | 1 cut(s) | 227 |
| Sau3AI | GATC | 5 cut(s) | 54, 80, 154, 202, 326 |
| Sau96I | GGNCC | 7 cut(s) | 4, 188, 213, 246, 260, 436, 453 |
| ScrFI | CCNGG | 2 cut(s) | 217, 250 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SetI | ASST | 8 cut(s) | 75, 117, 197, 230, 289, 303, 399, 441 |
| SinI | GGWCC | 4 cut(s) | 4, 246, 260, 436 |
| Sse9I | AATT | 1 cut(s) | 42 |
| SsiI | CCGC | 5 cut(s) | 119, 258, 412, 422, 431 |
| SspMI | CTAG | 2 cut(s) | 74, 408 |
| SstI | GAGCTC | 1 cut(s) | 289 |
| StyD4I | CCNGG | 2 cut(s) | 215, 248 |
| StyI | CCWWGG | 1 cut(s) | 301 |
| TaqI | TCGA | 1 cut(s) | 230 |
| TasI | AATT | 1 cut(s) | 42 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| TspGWI | ACGGA | 2 cut(s) | 167, 279 |
| VpaK11BI | GGWCC | 4 cut(s) | 4, 246, 260, 436 |
| XmnI | GAANNNNTTC | 1 cut(s) | 357 |
| XspI | CTAG | 2 cut(s) | 74, 408 |
| Zsp2I | ATGCAT | 1 cut(s) | 359 |