Rroxscaffold_6G00388670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000075
Physical Location & Seq
Forward (+)
1740411 .. 1740970
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388670.1

Sequence Viewer

Length: 363 bp
ATGCGGCCGCGGCTGTCATCGAGGACCTACGGTCAAACATTTATACGAGTGGCGGGGGAGGCCTTGCTTGGTAGGAGGCCGGTGGCGAATCGCATATGGCTCCCGATATACGAGAGGTTTAAGTTGGGGAGGTTTCCGGGTGATGGGTTCTCTTTTGTTGTTCGGTGGTTGTGGATTGTCCGCCGTGTTATGGCGTTGCTAACGTTGTATGCTTATTTTGCGGCGGATATGCCGAACGAGGCCCCTAGCAAGAGTGTCGCCCCGTACGCCGATGTCGATCCCAATATCATTATTCGGGGGTTGTTGCGAGAATCGAAGACGACAAGGCGAGTTAAGTTTGAGTTGCGGATAAGGTGCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.99

Weight (kDa)

11.21

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 8 cut(s) 4, 8, 10, 53, 181, 221, 224, 346
AclI AACGTT 1 cut(s) 203
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 5
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 143, 190
AhdI GACNNNNNGTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 272
AoxI GGCC 4 cut(s) 5, 60, 77, 240
AspS9I GGNCC 2 cut(s) 24, 241
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 323
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 246
BisI GCNGC 4 cut(s) 5, 8, 11, 222
BlsI GCNGC 4 cut(s) 6, 9, 12, 223
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 24
BmeRI GACNNNNNGTC 1 cut(s) 30
BmgT120I GGNCC 2 cut(s) 24, 241
BmiI GGNNCC 2 cut(s) 101, 243
BmrFI CCNGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 190
Bse118I RCCGGY 1 cut(s) 79
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 143, 190
BseX3I CGGCCG 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 4 cut(s) 7, 62, 79, 242
BsiEI CGRYCG 1 cut(s) 8
BsiSI CCGG 2 cut(s) 80, 137
BsiWI CGTACG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 143, 190
BsnI GGCC 4 cut(s) 7, 62, 79, 242
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 8 cut(s) 4, 8, 10, 53, 181, 221, 224, 346
BspANI GGCC 4 cut(s) 7, 62, 79, 242
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 101, 243
BspPI GGATC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 4 cut(s) 10, 59, 218, 266
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 323
BstZI CGGCCG 1 cut(s) 5
BsuRI GGCC 4 cut(s) 7, 62, 79, 242
BtgI CCRYGG 1 cut(s) 8
CciNI GCGGCCGC 1 cut(s) 5
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 24, 241
Cfr42I CCGCGG 1 cut(s) 11
Csp6I GTAC 1 cut(s) 265
CviJI RGCY 6 cut(s) 7, 13, 62, 79, 100, 242
CviKI_1 RGCY 6 cut(s) 7, 13, 62, 79, 100, 242
CviQI GTAC 1 cut(s) 265
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DriI GACNNNNNGTC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 5
EagI CGGCCG 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 30
EciI GGCGGA 2 cut(s) 170, 239
EclXI CGGCCG 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 5
EcoO109I RGGNCCY 2 cut(s) 24, 241
FaiI YATR 7 cut(s) 44, 95, 97, 109, 191, 210, 230
FauI CCCGC 1 cut(s) 46
FauNDI CATATG 1 cut(s) 95
Fnu4HI GCNGC 4 cut(s) 5, 8, 11, 222
Fsp4HI GCNGC 4 cut(s) 5, 8, 11, 222
FspBI CTAG 1 cut(s) 246
GluI GCNGC 4 cut(s) 5, 8, 11, 222
HaeIII GGCC 4 cut(s) 7, 62, 79, 242
HapII CCGG 2 cut(s) 80, 137
HinfI GANTC 2 cut(s) 88, 311
HpaII CCGG 2 cut(s) 80, 137
HphI GGTGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 59, 218, 266
HpySE526I ACGT 1 cut(s) 203
KspI CCGCGG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 2 cut(s) 93, 150
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 203
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 328
MnlI CCTC 6 cut(s) 15, 52, 69, 108, 123, 232
MseI TTAA 2 cut(s) 120, 333
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 2 cut(s) 80, 137
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 4 cut(s) 10, 59, 218, 266
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 95
NdeII GATC 1 cut(s) 277
NlaIV GGNNCC 2 cut(s) 101, 243
NotI GCGGCCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 2 cut(s) 88, 311
Pfl23II CGTACG 1 cut(s) 264
PkrI GCNGC 4 cut(s) 6, 9, 12, 223
PpuMI RGGWCCY 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 24
PspLI CGTACG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 101, 243
PspPI GGNCC 2 cut(s) 24, 241
PspPPI RGGWCCY 1 cut(s) 24
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SacII CCGCGG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 120, 333
SatI GCNGC 4 cut(s) 5, 8, 11, 222
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 24, 241
ScrFI CCNGG 1 cut(s) 138
SetI ASST 5 cut(s) 29, 119, 134, 206, 356
Sfr303I CCGCGG 1 cut(s) 11
SgrBI CCGCGG 1 cut(s) 11
SinI GGWCC 1 cut(s) 24
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 8 cut(s) 4, 8, 10, 53, 181, 221, 224, 346
SspMI CTAG 1 cut(s) 246
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 206
TaqI TCGA 3 cut(s) 20, 276, 314
TauI GCSGC 4 cut(s) 7, 10, 13, 224
TfiI GAWTC 2 cut(s) 88, 311
Tru1I TTAA 2 cut(s) 120, 333
Tru9I TTAA 2 cut(s) 120, 333
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.