Rmu_ssc0000175.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000175.1
OG0000075
Physical Location & Seq
Forward (+)
75601 .. 79706
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000175.1_g000020.1.cds

Sequence Viewer

Length: 2361 bp
atgagagccacaaattcacttttgggcagccttggacgcaagaactcccctcaagatggtacacggcaaggcttgatgaagatggatgatggtgtgcacggtttttgcacggctaggctcttgttgaagtataacatcatgtcttcaaggttcactggctatttatgcaaaggtgcatctggaagagtgcaagaattgctcctcaaaaccattcccagaaagctgattctgaaactgcagttttctgctttgcacaatgaattccgtggacttccctttaagcttccagagagaggaagggtagagcttgtggcggtgtcgccgacttggaggatttttccggcgagtgcgatcgtgtttgcggtgtcaggttctttgagagatcaaaagcgaaagggagggttgaggaacccgctgcggagagtgccaatagggggagggacgaagggagttctggtgccgagcggataccggctggataagaaacgcatatacagagtcgtgaagcattttggcaagggatcaaggcttgttgttcatgtgtgtcgcttgggtgtgctggaggagtatgtcaagatgccggagaacaaggggaaagaaaagaacaagaaggataagagtgtttatgatgatatggcagacctggacctgattttgggtctcgccagagatgggctggaagcccagaagcacgacgttggtctgccgtttggtgatctcgttcttcgtgatgggctagttgacctccgagttggtgtggagttcgatgaatttccgaccgagtatttgggtatcaaccttgatgatctgcatactaaagatacaggggaaatgaatgaagaggacgagttagaaattgaggtgaacctcgacttggaggctgcacgccgagagcagattgttctcgggaagggacagatctctgctgccgagaagttggctgcactaaggcaagaggaagagggggcaccggcccgggaggttcaagttgaaggtggtgacaataccgacaccacttatgtgttggaggtctcggcaccacaaaatgacgtcggaggtggtcagggaatgatagtggagggggctgctcatgtcgagaggacagcgacagctgcccaaaagaagagagaactaccaaggctgaaggatcttatgagaggtgtttcagttagtccacaacttaccaagagggccaggaccagtgatggtggtccttcgcatcagtggagccctagagggtcccaacgtgggggatcagagtcttctcagtcctccaggtcatcctcgcatggtgctggtacttccactggcgcacaacggaagctagattctgctgctcagaagcttgccaagagtctgaggaacagaggtatcgaggaagattgtattcctcaattggttgcagatctgcgggaccttccccatatcgataccggtgatgagttgcctaattttgctgtttctcaggagaaactgttgagggctgtttgcatgaactatcatactggtaacagactcagggctttgatcgagtccatgaataatttgcaggctgaactggatgccgagaggacaacattgaaagattatgaatcaactgtgcagcaaaccttgaaggcaagtgataacctgtccgcgaagctgaagcaggctgaggaagctcttgccaatgagaagaaagccggtattgatggccagaaatatatagaagagttggaaaagaaaaatgaagcccaagaagaggagttgagcaggcaagatgtggatctcactgagttatcagtgctgagggatagagtaggggagctttctactcagctgctccaacttgaaactctggaggagcggctgaggagccgagtccaggggatcagggactctcgtgctcaggttcgtgagctctcgggtcagattgcgggttcgcatgagcaggggactgttcatggtgttgacgactttgtaaactcgccggcttttgctgagaagaagaaacaggcagctaatgccagtattaccaagttgatgaagaaggtgatagcacaggggtggctaataatggataaggtcgtggcggatgtggaggctgcgaagaaggcagaggctgatgaggctgctatacgagagaggttacgccagcatgaaggggcggccgctgctgcccagaacccagctagatcgatagcgacagtgatgccgacagcagcagataagactatgactgtggcgatcacgacagctgctaccttgccgccaatgatagctgctaccttaccgccagcgacagctacgagtgagccacaacacatggagtccagcagcagtcagttccagaaattccaggtcaagggtcgggaaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

786

Amino Acids

86.16

Weight (kDa)

8.3

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1053
AccB1I GGYRCC 3 cut(s) 457, 967, 1036
AccBSI CCGCTC 2 cut(s) 465, 1846
AccII CGCG 1 cut(s) 1637
AclWI GGATC 5 cut(s) 529, 1155, 1261, 1773, 1877
AcoI YGGCCR 2 cut(s) 1693, 2148
AcsI RAATTY 4 cut(s) 13, 260, 770, 2333
AcuI CTGAAG 2 cut(s) 1163, 1664
AcyI GRCGYC 1 cut(s) 1050
AfaI GTAC 2 cut(s) 61, 1300
AgeI ACCGGT 1 cut(s) 1433
AgsI TTSAA 7 cut(s) 127, 147, 986, 992, 1582, 1615, 1832
AjnI CCWGG 5 cut(s) 642, 1193, 1274, 1863, 2337
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AleI CACNNNNGTG 2 cut(s) 1019, 2044
Alw21I GWGCWC 3 cut(s) 99, 1888, 1902
Alw26I GTCTC 2 cut(s) 665, 1036
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 5 cut(s) 529, 1155, 1261, 1773, 1877
AlwNI CAGNNNCTG 1 cut(s) 2102
Ama87I CYCGRG 3 cut(s) 905, 975, 1903
AoxI GGCC 4 cut(s) 972, 1191, 1693, 2148
ApaLI GTGCAC 1 cut(s) 95
ApoI RAATTY 4 cut(s) 13, 260, 770, 2333
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
AsiGI ACCGGT 1 cut(s) 1433
AspLEI GCGC 1 cut(s) 1313
AspS9I GGNCC 7 cut(s) 646, 973, 1191, 1197, 1211, 1239, 1414
AsuC2I CCSGG 2 cut(s) 976, 977
AsuHPI GGTGA 5 cut(s) 725, 874, 1010, 1448, 2044
AvaI CYCGRG 3 cut(s) 905, 975, 1903
AvaII GGWCC 5 cut(s) 646, 1197, 1211, 1239, 1414
BaeGI GKGCMC 2 cut(s) 99, 970
BaeI ACNNNNGTAYC 2 cut(s) 1354, 1387
BalI TGGCCA 1 cut(s) 1695
BanI GGYRCC 3 cut(s) 457, 967, 1036
BanII GRGCYC 2 cut(s) 1232, 1902
BauI CACGAG 1 cut(s) 1881
BbsI GAAGAC 2 cut(s) 135, 1254
Bbv12I GWGCWC 3 cut(s) 99, 1888, 1902
BbvCI CCTCAGC 3 cut(s) 1653, 1787, 1850
BccI CCATC 7 cut(s) 50, 76, 83, 665, 725, 1199, 1685
BceAI ACGGC 3 cut(s) 80, 126, 691
BcgI CGANNNNNNTGC 2 cut(s) 2173, 2207
BciT130I CCWGG 5 cut(s) 644, 1195, 1276, 1865, 2339
BciVI GTATCC 1 cut(s) 461
BcnI CCSGG 2 cut(s) 976, 977
BcoDI GTCTC 2 cut(s) 665, 1036
BfaI CTAG 5 cut(s) 114, 737, 1233, 1325, 2172
BfmI CTRYAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 461
BglII AGATCT 2 cut(s) 918, 1405
Bme1390I CCNGG 7 cut(s) 644, 976, 977, 1195, 1276, 1865, 2339
Bme18I GGWCC 5 cut(s) 646, 1197, 1211, 1239, 1414
BmeT110I CYCGRG 3 cut(s) 905, 975, 1903
BmgT120I GGNCC 7 cut(s) 646, 973, 1191, 1197, 1211, 1239, 1414
BmiI GGNNCC 9 cut(s) 410, 459, 969, 1038, 1229, 1240, 1241, 1415, 1856
BmrFI CCNGG 7 cut(s) 644, 976, 977, 1195, 1276, 1865, 2339
BmsI GCATC 5 cut(s) 185, 567, 1228, 1552, 2181
BoxI GACNNNNGTC 1 cut(s) 699
BpiI GAAGAC 2 cut(s) 135, 1254
BpmI CTGGAG 3 cut(s) 581, 1258, 1859
Bpu10I CCTNAGC 4 cut(s) 1653, 1787, 1850, 1887
BpuEI CTTGAG 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 976, 977
Bsa29I ATCGAT 2 cut(s) 1428, 2177
BsaBI GATNNNNATC 1 cut(s) 1764
BsaHI GRCGYC 1 cut(s) 1050
BsaI GGTCTC 2 cut(s) 665, 1036
BsaJI CCNNGG 5 cut(s) 31, 265, 975, 1136, 1864
BsaWI WCCGGW 1 cut(s) 1433
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 1460, 1490
Bse118I RCCGGY 5 cut(s) 471, 970, 1433, 1682, 1969
Bse1I ACTGG 6 cut(s) 160, 1200, 1312, 1510, 1563, 2007
Bse8I GATNNNNATC 1 cut(s) 1764
BseBI CCWGG 5 cut(s) 644, 1195, 1276, 1865, 2339
BseCI ATCGAT 2 cut(s) 1428, 2177
BseDI CCNNGG 5 cut(s) 31, 265, 975, 1136, 1864
BseGI GGATG 4 cut(s) 91, 1280, 1567, 2080
BseJI GATNNNNATC 1 cut(s) 1764
BseNI ACTGG 6 cut(s) 160, 1200, 1312, 1510, 1563, 2007
BseRI GAGGAG 5 cut(s) 191, 578, 1757, 1856, 1867
BseSI GKGCMC 2 cut(s) 99, 970
BseX3I CGGCCG 1 cut(s) 2148
BseYI CCCAGC 1 cut(s) 2167
BsgI GTGCAG 3 cut(s) 867, 927, 1622
Bsh1236I CGCG 1 cut(s) 1637
Bsh1285I CGRYCG 3 cut(s) 354, 780, 2151
BshFI GGCC 4 cut(s) 974, 1193, 1695, 2150
BshNI GGYRCC 3 cut(s) 457, 967, 1036
BshTI ACCGGT 1 cut(s) 1433
BshVI ATCGAT 2 cut(s) 1428, 2177
BsiEI CGRYCG 3 cut(s) 354, 780, 2151
BsiHKAI GWGCWC 3 cut(s) 99, 1888, 1902
BsiHKCI CYCGRG 3 cut(s) 905, 975, 1903
BsiSI CCGG 8 cut(s) 341, 472, 581, 971, 976, 1434, 1683, 1970
BslFI GGGAC 6 cut(s) 454, 927, 1225, 1427, 1889, 1948
BsmAI GTCTC 2 cut(s) 665, 1036
BsmFI GGGAC 6 cut(s) 454, 927, 1225, 1427, 1889, 1948
BsnI GGCC 4 cut(s) 974, 1193, 1695, 2150
Bso31I GGTCTC 2 cut(s) 665, 1036
BsoBI CYCGRG 3 cut(s) 905, 975, 1903
Bsp1286I GDGCHC 5 cut(s) 99, 970, 1232, 1888, 1902
BspANI GGCC 4 cut(s) 974, 1193, 1695, 2150
BspDI ATCGAT 2 cut(s) 1428, 2177
BspFNI CGCG 1 cut(s) 1637
BspLI GGNNCC 9 cut(s) 410, 459, 969, 1038, 1229, 1240, 1241, 1415, 1856
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 5 cut(s) 529, 1155, 1261, 1773, 1877
BspT107I GGYRCC 3 cut(s) 457, 967, 1036
BspTNI GGTCTC 2 cut(s) 665, 1036
BsrBI CCGCTC 2 cut(s) 465, 1846
BsrFI RCCGGY 5 cut(s) 471, 970, 1433, 1682, 1969
BsrI ACTGG 6 cut(s) 160, 1200, 1312, 1510, 1563, 2007
BssAI RCCGGY 5 cut(s) 471, 970, 1433, 1682, 1969
BssECI CCNNGG 5 cut(s) 31, 265, 975, 1136, 1864
BssNI GRCGYC 1 cut(s) 1050
BssSI CACGAG 1 cut(s) 1881
BssT1I CCWWGG 2 cut(s) 31, 1136
Bst2BI CACGAG 1 cut(s) 1881
Bst2UI CCWGG 5 cut(s) 644, 1195, 1276, 1865, 2339
Bst4CI ACNGT 6 cut(s) 101, 1476, 1600, 1939, 2188, 2221
Bst6I CTCTTC 6 cut(s) 178, 834, 954, 1118, 1704, 1734
BstACI GRCGYC 1 cut(s) 1050
BstAPI GCANNNNNTGC 2 cut(s) 196, 2003
BstC8I GCNNGC 8 cut(s) 886, 1347, 1551, 1650, 1754, 1971, 2135, 2277
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 4 cut(s) 91, 1280, 1567, 2080
BstFNI CGCG 1 cut(s) 1637
BstHHI GCGC 1 cut(s) 1313
BstMAI GTCTC 2 cut(s) 665, 1036
BstMCI CGRYCG 3 cut(s) 354, 780, 2151
BstNI CCWGG 5 cut(s) 644, 1195, 1276, 1865, 2339
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 7 cut(s) 642, 974, 975, 1193, 1274, 1863, 2337
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 2 cut(s) 99, 970
BstUI CGCG 1 cut(s) 1637
BstV2I GAAGAC 2 cut(s) 135, 1254
BstX2I RGATCY 4 cut(s) 918, 1147, 1405, 1765
BstYI RGATCY 4 cut(s) 918, 1147, 1405, 1765
BstZI CGGCCG 1 cut(s) 2148
Bsu15I ATCGAT 2 cut(s) 1428, 2177
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 4 cut(s) 974, 1193, 1695, 2150
BsuTUI ATCGAT 2 cut(s) 1428, 2177
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 91, 1280, 1567, 2080
BtsIMutI CAGTG 7 cut(s) 153, 1207, 1229, 1305, 1770, 1788, 2193
Cac8I GCNNGC 8 cut(s) 886, 1347, 1551, 1650, 1754, 1971, 2135, 2277
CaiI CAGNNNCTG 1 cut(s) 2102
CciNI GCGGCCGC 1 cut(s) 2148
CfoI GCGC 1 cut(s) 1313
Cfr10I RCCGGY 5 cut(s) 471, 970, 1433, 1682, 1969
Cfr13I GGNCC 7 cut(s) 646, 973, 1191, 1197, 1211, 1239, 1414
Cfr9I CCCGGG 1 cut(s) 975
ClaI ATCGAT 2 cut(s) 1428, 2177
CseI GACGC 1 cut(s) 45
Csp6I GTAC 2 cut(s) 60, 1299
CspAI ACCGGT 1 cut(s) 1433
CviQI GTAC 2 cut(s) 60, 1299
EaeI YGGCCR 2 cut(s) 1693, 2148
EagI CGGCCG 1 cut(s) 2148
Eam1104I CTCTTC 6 cut(s) 178, 834, 954, 1118, 1704, 1734
EarI CTCTTC 6 cut(s) 178, 834, 954, 1118, 1704, 1734
EciI GGCGGA 1 cut(s) 2087
Ecl136II GAGCTC 1 cut(s) 1900
EclXI CGGCCG 1 cut(s) 2148
Eco130I CCWWGG 2 cut(s) 31, 1136
Eco24I GRGCYC 2 cut(s) 1232, 1902
Eco31I GGTCTC 2 cut(s) 665, 1036
Eco47I GGWCC 5 cut(s) 646, 1197, 1211, 1239, 1414
Eco52I CGGCCG 1 cut(s) 2148
Eco53kI GAGCTC 1 cut(s) 1900
Eco57I CTGAAG 2 cut(s) 1163, 1664
Eco88I CYCGRG 3 cut(s) 905, 975, 1903
EcoICRI GAGCTC 1 cut(s) 1900
EcoO109I RGGNCCY 2 cut(s) 1239, 1414
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 5 cut(s) 642, 1193, 1274, 1863, 2337
EcoT14I CCWWGG 2 cut(s) 31, 1136
EcoT38I GRGCYC 2 cut(s) 1232, 1902
ErhI CCWWGG 2 cut(s) 31, 1136
FaqI GGGAC 6 cut(s) 454, 927, 1225, 1427, 1889, 1948
FauI CCCGC 3 cut(s) 420, 1404, 1909
FokI GGATG 4 cut(s) 98, 1267, 1574, 2087
FriOI GRGCYC 2 cut(s) 1232, 1902
FspBI CTAG 5 cut(s) 114, 737, 1233, 1325, 2172
GlaI GCGC 1 cut(s) 1312
GsaI CCCAGC 1 cut(s) 2171
GsuI CTGGAG 3 cut(s) 581, 1258, 1859
HaeIII GGCC 4 cut(s) 974, 1193, 1695, 2150
HapII CCGG 8 cut(s) 341, 472, 581, 971, 976, 1434, 1683, 1970
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 1313
Hin1I GRCGYC 1 cut(s) 1050
Hin6I GCGC 1 cut(s) 1311
HinP1I GCGC 1 cut(s) 1311
HincII GTYRAC 2 cut(s) 742, 1951
HindII GTYRAC 2 cut(s) 742, 1951
HindIII AAGCTT 2 cut(s) 281, 1343
HpaII CCGG 8 cut(s) 341, 472, 581, 971, 976, 1434, 1683, 1970
HphI GGTGA 5 cut(s) 725, 874, 1010, 1448, 2044
Hpy166II GTNNAC 9 cut(s) 62, 97, 153, 269, 742, 865, 1175, 1951, 1963
Hpy188I TCNGA 8 cut(s) 231, 749, 777, 1055, 1258, 1341, 1359, 1911
Hpy8I GTNNAC 9 cut(s) 62, 97, 153, 269, 742, 865, 1175, 1951, 1963
Hpy99I CGWCG 2 cut(s) 698, 1055
HpyCH4III ACNGT 6 cut(s) 101, 1476, 1600, 1939, 2188, 2221
HpyCH4IV ACGT 3 cut(s) 696, 1050, 1246
HpySE526I ACGT 3 cut(s) 696, 1050, 1246
Hsp92I GRCGYC 1 cut(s) 1050
HspAI GCGC 1 cut(s) 1311
KflI GGGWCCC 1 cut(s) 1239
KroI GCCGGC 1 cut(s) 1969
KroNI GCCGGC 1 cut(s) 1971
LmnI GCTCC 6 cut(s) 204, 1227, 1804, 1827, 1843, 1854
LweI GCATC 5 cut(s) 185, 567, 1228, 1552, 2181
MaeI CTAG 5 cut(s) 114, 737, 1233, 1325, 2172
MaeII ACGT 3 cut(s) 696, 1050, 1246
MaeIII GTNAC 3 cut(s) 998, 1508, 2127
MbiI CCGCTC 2 cut(s) 465, 1846
MfeI CAATTG 1 cut(s) 1394
MflI RGATCY 4 cut(s) 918, 1147, 1405, 1765
MhlI GDGCHC 5 cut(s) 99, 970, 1232, 1888, 1902
MlsI TGGCCA 1 cut(s) 1695
MluCI AATT 9 cut(s) 13, 194, 260, 770, 855, 1394, 1450, 1543, 2333
MluNI TGGCCA 1 cut(s) 1695
MlyI GAGTC 8 cut(s) 507, 1268, 1363, 1509, 1541, 1869, 1871, 2318
MmeI TCCRAC 5 cut(s) 800, 1005, 1033, 1695, 1849
Mox20I TGGCCA 1 cut(s) 1695
MroNI GCCGGC 1 cut(s) 1969
MscI TGGCCA 1 cut(s) 1695
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 1019, 2044
Msp20I TGGCCA 1 cut(s) 1695
MspA1I CMGCKG 5 cut(s) 415, 1112, 1819, 2153, 2237
MspI CCGG 8 cut(s) 341, 472, 581, 971, 976, 1434, 1683, 1970
MspR9I CCNGG 7 cut(s) 644, 976, 977, 1195, 1276, 1865, 2339
MunI CAATTG 1 cut(s) 1394
MvaI CCWGG 5 cut(s) 644, 1195, 1276, 1865, 2339
MvnI CGCG 1 cut(s) 1637
NaeI GCCGGC 1 cut(s) 1971
NciI CCSGG 2 cut(s) 976, 977
NgoMIV GCCGGC 1 cut(s) 1969
NlaIV GGNNCC 9 cut(s) 410, 459, 969, 1038, 1229, 1240, 1241, 1415, 1856
NmeAIII GCCGAG 6 cut(s) 486, 914, 955, 1013, 1591, 1883
NmuCI GTSAC 1 cut(s) 998
NotI GCGGCCGC 1 cut(s) 2148
OliI CACNNNNGTG 2 cut(s) 1019, 2044
PdiI GCCGGC 1 cut(s) 1971
PfeI GAWTC 3 cut(s) 226, 1328, 1592
PinAI ACCGGT 1 cut(s) 1433
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 8 cut(s) 506, 1267, 1362, 1509, 1540, 1868, 1871, 2317
PpsI GAGTC 8 cut(s) 506, 1267, 1362, 1509, 1540, 1868, 1871, 2317
PpuMI RGGWCCY 2 cut(s) 1239, 1414
PshAI GACNNNNGTC 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 1902
Psp5II RGGWCCY 2 cut(s) 1239, 1414
Psp6I CCWGG 5 cut(s) 642, 1193, 1274, 1863, 2337
PspFI CCCAGC 1 cut(s) 2167
PspGI CCWGG 5 cut(s) 642, 1193, 1274, 1863, 2337
PspN4I GGNNCC 9 cut(s) 410, 459, 969, 1038, 1229, 1240, 1241, 1415, 1856
PspPI GGNCC 7 cut(s) 646, 973, 1191, 1197, 1211, 1239, 1414
PspPPI RGGWCCY 2 cut(s) 1239, 1414
PstI CTGCAG 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 2102
PsuI RGATCY 4 cut(s) 918, 1147, 1405, 1765
PvuI CGATCG 1 cut(s) 354
PvuII CAGCTG 3 cut(s) 1112, 1819, 2237
RsaI GTAC 2 cut(s) 61, 1300
RsaNI GTAC 2 cut(s) 60, 1299
RseI CAYNNNNRTG 2 cut(s) 1019, 2044
SacI GAGCTC 1 cut(s) 1902
SaqAI TTAA 1 cut(s) 279
Sau96I GGNCC 7 cut(s) 646, 973, 1191, 1197, 1211, 1239, 1414
SchI GAGTC 8 cut(s) 507, 1268, 1363, 1509, 1541, 1869, 1871, 2318
ScrFI CCNGG 7 cut(s) 644, 976, 977, 1195, 1276, 1865, 2339
SduI GDGCHC 5 cut(s) 99, 970, 1232, 1888, 1902
SfaNI GCATC 5 cut(s) 185, 567, 1228, 1552, 2181
SfcI CTRYAG 1 cut(s) 236
SinI GGWCC 5 cut(s) 646, 1197, 1211, 1239, 1414
SmaI CCCGGG 1 cut(s) 977
SmiMI CAYNNNNRTG 2 cut(s) 1019, 2044
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 9 cut(s) 13, 194, 260, 770, 855, 1394, 1450, 1543, 2333
SspMI CTAG 5 cut(s) 114, 737, 1233, 1325, 2172
SstI GAGCTC 1 cut(s) 1902
StyD4I CCNGG 7 cut(s) 642, 974, 975, 1193, 1274, 1863, 2337
StyI CCWWGG 2 cut(s) 31, 1136
TaaI ACNGT 6 cut(s) 101, 1476, 1600, 1939, 2188, 2221
TaiI ACGT 3 cut(s) 699, 1053, 1249
TaqI TCGA 7 cut(s) 765, 870, 1095, 1374, 1428, 1530, 2177
TaqII GACCGA 1 cut(s) 794
TasI AATT 9 cut(s) 13, 194, 260, 770, 855, 1394, 1450, 1543, 2333
TauI GCSGC 4 cut(s) 1849, 2150, 2153, 2251
TfiI GAWTC 3 cut(s) 226, 1328, 1592
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 7 cut(s) 160, 1207, 1229, 1312, 1777, 1788, 2193
TseFI GTSAC 1 cut(s) 998
Tsp45I GTSAC 1 cut(s) 998
TspGWI ACGGA 2 cut(s) 254, 1333
TspMI CCCGGG 1 cut(s) 975
TspRI CASTG 7 cut(s) 160, 1207, 1229, 1312, 1777, 1788, 2193
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 5 cut(s) 646, 1197, 1211, 1239, 1414
XapI RAATTY 4 cut(s) 13, 260, 770, 2333
XcmI CCANNNNNNNNNTGG 2 cut(s) 673, 1021
XmaI CCCGGG 1 cut(s) 975
XspI CTAG 5 cut(s) 114, 737, 1233, 1325, 2172
ZraI GACGTC 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.