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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 265 |
| AccI | GTMKAC | 1 cut(s) | 287 |
| AccII | CGCG | 2 cut(s) | 174, 314 |
| AciI | CCGC | 3 cut(s) | 86, 294, 312 |
| AclWI | GGATC | 2 cut(s) | 22, 35 |
| AcvI | CACGTG | 1 cut(s) | 45 |
| AcyI | GRCGYC | 1 cut(s) | 266 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 37, 118, 279 |
| AflIII | ACRYGT | 2 cut(s) | 42, 44 |
| Alw26I | GTCTC | 2 cut(s) | 158, 233 |
| AlwI | GGATC | 2 cut(s) | 22, 35 |
| Ama87I | CYCGRG | 3 cut(s) | 103, 155, 177 |
| AoxI | GGCC | 1 cut(s) | 5 |
| AspA2I | CCTAGG | 1 cut(s) | 241 |
| AspLEI | GCGC | 2 cut(s) | 176, 268 |
| AspS9I | GGNCC | 2 cut(s) | 5, 82 |
| AsuC2I | CCSGG | 2 cut(s) | 9, 115 |
| AsuHPI | GGTGA | 1 cut(s) | 223 |
| AvaI | CYCGRG | 3 cut(s) | 103, 155, 177 |
| AvaII | GGWCC | 1 cut(s) | 82 |
| AvrII | CCTAGG | 1 cut(s) | 241 |
| BamHI | GGATCC | 1 cut(s) | 27 |
| BanI | GGYRCC | 1 cut(s) | 265 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BbrPI | CACGTG | 1 cut(s) | 45 |
| BccI | CCATC | 5 cut(s) | 6, 17, 53, 256, 277 |
| BcnI | CCSGG | 2 cut(s) | 9, 115 |
| BcoDI | GTCTC | 2 cut(s) | 158, 233 |
| BfaI | CTAG | 1 cut(s) | 242 |
| BfoI | RGCGCY | 1 cut(s) | 269 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 13 |
| BglII | AGATCT | 1 cut(s) | 181 |
| BlnI | CCTAGG | 1 cut(s) | 241 |
| Bme1390I | CCNGG | 2 cut(s) | 9, 115 |
| Bme18I | GGWCC | 1 cut(s) | 82 |
| BmeT110I | CYCGRG | 3 cut(s) | 103, 155, 177 |
| BmgT120I | GGNCC | 2 cut(s) | 5, 82 |
| BmiI | GGNNCC | 4 cut(s) | 6, 29, 84, 267 |
| BmrFI | CCNGG | 2 cut(s) | 9, 115 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 180, 212 |
| BpuMI | CCSGG | 2 cut(s) | 9, 115 |
| Bsa29I | ATCGAT | 1 cut(s) | 131 |
| BsaAI | YACGTR | 1 cut(s) | 45 |
| BsaHI | GRCGYC | 1 cut(s) | 266 |
| BsaI | GGTCTC | 2 cut(s) | 158, 233 |
| BsaJI | CCNNGG | 2 cut(s) | 113, 241 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 37, 118, 279 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| BseCI | ATCGAT | 1 cut(s) | 131 |
| BseDI | CCNNGG | 2 cut(s) | 113, 241 |
| BseGI | GGATG | 4 cut(s) | 17, 28, 64, 269 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 37, 118, 279 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 2 cut(s) | 174, 314 |
| Bsh1285I | CGRYCG | 1 cut(s) | 312 |
| BshFI | GGCC | 1 cut(s) | 7 |
| BshNI | GGYRCC | 1 cut(s) | 265 |
| BshVI | ATCGAT | 1 cut(s) | 131 |
| BsiEI | CGRYCG | 1 cut(s) | 312 |
| BsiHKCI | CYCGRG | 3 cut(s) | 103, 155, 177 |
| BsiSI | CCGG | 2 cut(s) | 8, 115 |
| BslFI | GGGAC | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 37, 118, 279 |
| BsmAI | GTCTC | 2 cut(s) | 158, 233 |
| BsmFI | GGGAC | 1 cut(s) | 95 |
| BsnI | GGCC | 1 cut(s) | 7 |
| Bso31I | GGTCTC | 2 cut(s) | 158, 233 |
| BsoBI | CYCGRG | 3 cut(s) | 103, 155, 177 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp143I | GATC | 2 cut(s) | 27, 181 |
| BspACI | CCGC | 3 cut(s) | 86, 294, 312 |
| BspANI | GGCC | 1 cut(s) | 7 |
| BspDI | ATCGAT | 1 cut(s) | 131 |
| BspFNI | CGCG | 2 cut(s) | 174, 314 |
| BspLI | GGNNCC | 4 cut(s) | 6, 29, 84, 267 |
| BspPI | GGATC | 2 cut(s) | 22, 35 |
| BspT107I | GGYRCC | 1 cut(s) | 265 |
| BspTNI | GGTCTC | 2 cut(s) | 158, 233 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BssECI | CCNNGG | 2 cut(s) | 113, 241 |
| BssMI | GATC | 2 cut(s) | 27, 181 |
| BssNI | GRCGYC | 1 cut(s) | 266 |
| BssT1I | CCWWGG | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 1 cut(s) | 301 |
| BstACI | GRCGYC | 1 cut(s) | 266 |
| BstBAI | YACGTR | 1 cut(s) | 45 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstDEI | CTNAG | 1 cut(s) | 185 |
| BstF5I | GGATG | 4 cut(s) | 17, 28, 64, 269 |
| BstFNI | CGCG | 2 cut(s) | 174, 314 |
| BstH2I | RGCGCY | 1 cut(s) | 269 |
| BstHHI | GCGC | 2 cut(s) | 176, 268 |
| BstKTI | GATC | 2 cut(s) | 30, 184 |
| BstMAI | GTCTC | 2 cut(s) | 158, 233 |
| BstMBI | GATC | 2 cut(s) | 27, 181 |
| BstMCI | CGRYCG | 1 cut(s) | 312 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 13 |
| BstSCI | CCNGG | 2 cut(s) | 7, 113 |
| BstUI | CGCG | 2 cut(s) | 174, 314 |
| BstX2I | RGATCY | 2 cut(s) | 27, 181 |
| BstYI | RGATCY | 2 cut(s) | 27, 181 |
| Bsu15I | ATCGAT | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 7 |
| BsuTUI | ATCGAT | 1 cut(s) | 131 |
| BtgZI | GCGATG | 1 cut(s) | 225 |
| BtsCI | GGATG | 4 cut(s) | 17, 28, 64, 269 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| CfoI | GCGC | 2 cut(s) | 176, 268 |
| Cfr13I | GGNCC | 2 cut(s) | 5, 82 |
| ClaI | ATCGAT | 1 cut(s) | 131 |
| CviAII | CATG | 1 cut(s) | 139 |
| CviJI | RGCY | 2 cut(s) | 7, 196 |
| CviKI_1 | RGCY | 2 cut(s) | 7, 196 |
| DdeI | CTNAG | 1 cut(s) | 185 |
| DinI | GGCGCC | 1 cut(s) | 267 |
| DpnI | GATC | 2 cut(s) | 29, 183 |
| DpnII | GATC | 2 cut(s) | 27, 181 |
| Eco130I | CCWWGG | 1 cut(s) | 241 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 2 cut(s) | 158, 233 |
| Eco47I | GGWCC | 1 cut(s) | 82 |
| Eco72I | CACGTG | 1 cut(s) | 45 |
| Eco88I | CYCGRG | 3 cut(s) | 103, 155, 177 |
| EcoO109I | RGGNCCY | 1 cut(s) | 82 |
| EcoT14I | CCWWGG | 1 cut(s) | 241 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| EgeI | GGCGCC | 1 cut(s) | 267 |
| EheI | GGCGCC | 1 cut(s) | 267 |
| ErhI | CCWWGG | 1 cut(s) | 241 |
| FaeI | CATG | 1 cut(s) | 142 |
| FaiI | YATR | 4 cut(s) | 54, 140, 278, 280 |
| FaqI | GGGAC | 1 cut(s) | 95 |
| FatI | CATG | 1 cut(s) | 138 |
| FauI | CCCGC | 1 cut(s) | 93 |
| FblI | GTMKAC | 1 cut(s) | 287 |
| FokI | GGATG | 4 cut(s) | 24, 35, 71, 256 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| FspBI | CTAG | 1 cut(s) | 242 |
| GlaI | GCGC | 2 cut(s) | 175, 267 |
| HaeII | RGCGCY | 1 cut(s) | 269 |
| HaeIII | GGCC | 1 cut(s) | 7 |
| HapII | CCGG | 2 cut(s) | 8, 115 |
| HhaI | GCGC | 2 cut(s) | 176, 268 |
| Hin1I | GRCGYC | 1 cut(s) | 266 |
| Hin1II | CATG | 1 cut(s) | 142 |
| Hin6I | GCGC | 2 cut(s) | 174, 266 |
| HinP1I | GCGC | 2 cut(s) | 174, 266 |
| HincII | GTYRAC | 1 cut(s) | 288 |
| HindII | GTYRAC | 1 cut(s) | 288 |
| HinfI | GANTC | 1 cut(s) | 108 |
| HpaII | CCGG | 2 cut(s) | 8, 115 |
| HphI | GGTGA | 1 cut(s) | 223 |
| Hpy166II | GTNNAC | 1 cut(s) | 288 |
| Hpy188I | TCNGA | 2 cut(s) | 32, 40 |
| Hpy188III | TCNNGA | 3 cut(s) | 103, 105, 179 |
| Hpy8I | GTNNAC | 1 cut(s) | 288 |
| HpyCH4III | ACNGT | 1 cut(s) | 301 |
| HpyCH4IV | ACGT | 1 cut(s) | 44 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 13 |
| HpyF3I | CTNAG | 1 cut(s) | 185 |
| HpySE526I | ACGT | 1 cut(s) | 44 |
| Hsp92I | GRCGYC | 1 cut(s) | 266 |
| Hsp92II | CATG | 1 cut(s) | 142 |
| HspAI | GCGC | 2 cut(s) | 174, 266 |
| KasI | GGCGCC | 1 cut(s) | 265 |
| Kzo9I | GATC | 2 cut(s) | 27, 181 |
| LpnPI | CCDG | 2 cut(s) | 21, 128 |
| MaeI | CTAG | 1 cut(s) | 242 |
| MaeII | ACGT | 1 cut(s) | 44 |
| MalI | GATC | 2 cut(s) | 29, 183 |
| MboI | GATC | 2 cut(s) | 27, 181 |
| MboII | GAAGA | 1 cut(s) | 85 |
| MflI | RGATCY | 2 cut(s) | 27, 181 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MluCI | AATT | 2 cut(s) | 249, 255 |
| Mly113I | GGCGCC | 1 cut(s) | 266 |
| MlyI | GAGTC | 1 cut(s) | 117 |
| MmeI | TCCRAC | 1 cut(s) | 18 |
| MnlI | CCTC | 5 cut(s) | 11, 99, 143, 208, 283 |
| MspI | CCGG | 2 cut(s) | 8, 115 |
| MspR9I | CCNGG | 2 cut(s) | 9, 115 |
| MvnI | CGCG | 2 cut(s) | 174, 314 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 13 |
| NarI | GGCGCC | 1 cut(s) | 266 |
| NciI | CCSGG | 2 cut(s) | 9, 115 |
| NdeII | GATC | 2 cut(s) | 27, 181 |
| NlaIII | CATG | 1 cut(s) | 142 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 29, 84, 267 |
| PaeR7I | CTCGAG | 2 cut(s) | 103, 177 |
| PleI | GAGTC | 1 cut(s) | 116 |
| PluTI | GGCGCC | 1 cut(s) | 269 |
| PmaCI | CACGTG | 1 cut(s) | 45 |
| PmlI | CACGTG | 1 cut(s) | 45 |
| PpsI | GAGTC | 1 cut(s) | 116 |
| Ppu21I | YACGTR | 1 cut(s) | 45 |
| PpuMI | RGGWCCY | 1 cut(s) | 82 |
| Psp5II | RGGWCCY | 1 cut(s) | 82 |
| PspCI | CACGTG | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 29, 84, 267 |
| PspPI | GGNCC | 2 cut(s) | 5, 82 |
| PspPPI | RGGWCCY | 1 cut(s) | 82 |
| PsuI | RGATCY | 2 cut(s) | 27, 181 |
| SalI | GTCGAC | 1 cut(s) | 286 |
| Sau3AI | GATC | 2 cut(s) | 27, 181 |
| Sau96I | GGNCC | 2 cut(s) | 5, 82 |
| SchI | GAGTC | 1 cut(s) | 117 |
| ScrFI | CCNGG | 2 cut(s) | 9, 115 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SetI | ASST | 4 cut(s) | 47, 154, 206, 219 |
| SfoI | GGCGCC | 1 cut(s) | 267 |
| Sfr274I | CTCGAG | 2 cut(s) | 103, 177 |
| SinI | GGWCC | 1 cut(s) | 82 |
| SlaI | CTCGAG | 2 cut(s) | 103, 177 |
| SmlI | CTYRAG | 2 cut(s) | 103, 177 |
| SmoI | CTYRAG | 2 cut(s) | 103, 177 |
| Sse9I | AATT | 2 cut(s) | 249, 255 |
| SsiI | CCGC | 3 cut(s) | 86, 294, 312 |
| SspDI | GGCGCC | 1 cut(s) | 265 |
| SspMI | CTAG | 1 cut(s) | 242 |
| StyD4I | CCNGG | 2 cut(s) | 7, 113 |
| StyI | CCWWGG | 1 cut(s) | 241 |
| TaaI | ACNGT | 1 cut(s) | 301 |
| TaiI | ACGT | 1 cut(s) | 47 |
| TaqI | TCGA | 5 cut(s) | 71, 104, 131, 178, 287 |
| TasI | AATT | 2 cut(s) | 249, 255 |
| TspGWI | ACGGA | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 82 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 276 |
| XhoI | CTCGAG | 2 cut(s) | 103, 177 |
| XmaJI | CCTAGG | 1 cut(s) | 241 |
| XmiI | GTMKAC | 1 cut(s) | 287 |
| XspI | CTAG | 1 cut(s) | 242 |