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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 44, 370 |
| AccII | CGCG | 1 cut(s) | 7 |
| AciI | CCGC | 7 cut(s) | 7, 42, 169, 238, 355, 370, 431 |
| AcuI | CTGAAG | 2 cut(s) | 384, 581 |
| AfaI | GTAC | 1 cut(s) | 538 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 271, 430 |
| AgeI | ACCGGT | 1 cut(s) | 293 |
| AgsI | TTSAA | 2 cut(s) | 271, 493 |
| AluBI | AGCT | 6 cut(s) | 121, 301, 421, 449, 569, 595 |
| AluI | AGCT | 6 cut(s) | 121, 301, 421, 449, 569, 595 |
| Alw21I | GWGCWC | 1 cut(s) | 423 |
| Alw26I | GTCTC | 1 cut(s) | 572 |
| Ama87I | CYCGRG | 1 cut(s) | 528 |
| AoxI | GGCC | 6 cut(s) | 246, 255, 309, 327, 432, 603 |
| ApeKI | GCWGC | 2 cut(s) | 301, 569 |
| AsiGI | ACCGGT | 1 cut(s) | 293 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 2 cut(s) | 309, 352 |
| AvaI | CYCGRG | 1 cut(s) | 528 |
| AvaII | GGWCC | 1 cut(s) | 352 |
| BanII | GRGCYC | 2 cut(s) | 41, 423 |
| Bbv12I | GWGCWC | 1 cut(s) | 423 |
| BbvI | GCAGC | 2 cut(s) | 288, 556 |
| BccI | CCATC | 1 cut(s) | 176 |
| BceAI | ACGGC | 2 cut(s) | 242, 418 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 170, 204, 454, 464, 488, 498 |
| BcoDI | GTCTC | 1 cut(s) | 572 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 254 |
| BisI | GCNGC | 4 cut(s) | 239, 302, 432, 570 |
| BlsI | GCNGC | 4 cut(s) | 240, 303, 433, 571 |
| Bme18I | GGWCC | 1 cut(s) | 352 |
| BmeT110I | CYCGRG | 1 cut(s) | 528 |
| BmgT120I | GGNCC | 2 cut(s) | 309, 352 |
| BmiI | GGNNCC | 1 cut(s) | 40 |
| BmsI | GCATC | 3 cut(s) | 119, 397, 472 |
| BsaI | GGTCTC | 1 cut(s) | 572 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| BsaWI | WCCGGW | 1 cut(s) | 293 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 40, 70 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 271, 430 |
| Bse118I | RCCGGY | 1 cut(s) | 293 |
| Bse3DI | GCAATG | 1 cut(s) | 465 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseGI | GGATG | 2 cut(s) | 487, 520 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 271, 430 |
| BseMI | GCAATG | 1 cut(s) | 465 |
| BseMII | CTCAG | 1 cut(s) | 84 |
| BseRI | GAGGAG | 1 cut(s) | 208 |
| BseXI | GCAGC | 2 cut(s) | 288, 556 |
| Bsh1236I | CGCG | 1 cut(s) | 7 |
| Bsh1285I | CGRYCG | 1 cut(s) | 576 |
| BshFI | GGCC | 6 cut(s) | 248, 257, 311, 329, 434, 605 |
| BshTI | ACCGGT | 1 cut(s) | 293 |
| BsiEI | CGRYCG | 1 cut(s) | 576 |
| BsiHKAI | GWGCWC | 1 cut(s) | 423 |
| BsiHKCI | CYCGRG | 1 cut(s) | 528 |
| BsiSI | CCGG | 1 cut(s) | 294 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 271, 430 |
| BsmAI | GTCTC | 1 cut(s) | 572 |
| BsnI | GGCC | 6 cut(s) | 248, 257, 311, 329, 434, 605 |
| Bso31I | GGTCTC | 1 cut(s) | 572 |
| BsoBI | CYCGRG | 1 cut(s) | 528 |
| Bsp1286I | GDGCHC | 2 cut(s) | 41, 423 |
| Bsp143I | GATC | 3 cut(s) | 136, 460, 524 |
| BspACI | CCGC | 7 cut(s) | 7, 42, 169, 238, 355, 370, 431 |
| BspANI | GGCC | 6 cut(s) | 248, 257, 311, 329, 434, 605 |
| BspCNI | CTCAG | 1 cut(s) | 85 |
| BspFNI | CGCG | 1 cut(s) | 7 |
| BspHI | TCATGA | 1 cut(s) | 157 |
| BspLI | GGNNCC | 1 cut(s) | 40 |
| BspQI | GCTCTTC | 1 cut(s) | 360 |
| BspTNI | GGTCTC | 1 cut(s) | 572 |
| BsrBI | CCGCTC | 2 cut(s) | 44, 370 |
| BsrDI | GCAATG | 1 cut(s) | 465 |
| BsrFI | RCCGGY | 1 cut(s) | 293 |
| BssAI | RCCGGY | 1 cut(s) | 293 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssMI | GATC | 3 cut(s) | 136, 460, 524 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 1 cut(s) | 80 |
| Bst6I | CTCTTC | 3 cut(s) | 246, 330, 360 |
| BstC8I | GCNNGC | 4 cut(s) | 29, 171, 219, 567 |
| BstDEI | CTNAG | 2 cut(s) | 93, 105 |
| BstF5I | GGATG | 2 cut(s) | 487, 520 |
| BstFNI | CGCG | 1 cut(s) | 7 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstKTI | GATC | 3 cut(s) | 139, 463, 527 |
| BstMAI | GTCTC | 1 cut(s) | 572 |
| BstMBI | GATC | 3 cut(s) | 136, 460, 524 |
| BstMCI | CGRYCG | 1 cut(s) | 576 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 254 |
| BstUI | CGCG | 1 cut(s) | 7 |
| BstV1I | GCAGC | 2 cut(s) | 288, 556 |
| BsuRI | GGCC | 6 cut(s) | 248, 257, 311, 329, 434, 605 |
| BtgZI | GCGATG | 1 cut(s) | 420 |
| BtsCI | GGATG | 2 cut(s) | 487, 520 |
| Cac8I | GCNNGC | 4 cut(s) | 29, 171, 219, 567 |
| CciI | TCATGA | 1 cut(s) | 157 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr10I | RCCGGY | 1 cut(s) | 293 |
| Cfr13I | GGNCC | 2 cut(s) | 309, 352 |
| Csp6I | GTAC | 1 cut(s) | 537 |
| CspAI | ACCGGT | 1 cut(s) | 293 |
| CviAII | CATG | 1 cut(s) | 158 |
| CviQI | GTAC | 1 cut(s) | 537 |
| DdeI | CTNAG | 2 cut(s) | 93, 105 |
| DpnI | GATC | 3 cut(s) | 138, 462, 526 |
| DpnII | GATC | 3 cut(s) | 136, 460, 524 |
| DraI | TTTAAA | 1 cut(s) | 324 |
| Eam1104I | CTCTTC | 3 cut(s) | 246, 330, 360 |
| EarI | CTCTTC | 3 cut(s) | 246, 330, 360 |
| Ecl136II | GAGCTC | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco147I | AGGCCT | 1 cut(s) | 329 |
| Eco24I | GRGCYC | 2 cut(s) | 41, 423 |
| Eco31I | GGTCTC | 1 cut(s) | 572 |
| Eco47I | GGWCC | 1 cut(s) | 352 |
| Eco53kI | GAGCTC | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 2 cut(s) | 384, 581 |
| Eco88I | CYCGRG | 1 cut(s) | 528 |
| EcoICRI | GAGCTC | 1 cut(s) | 421 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| EcoT38I | GRGCYC | 2 cut(s) | 41, 423 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 1 cut(s) | 161 |
| FaiI | YATR | 3 cut(s) | 15, 102, 159 |
| FatI | CATG | 1 cut(s) | 157 |
| FauI | CCCGC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 4 cut(s) | 239, 302, 432, 570 |
| FokI | GGATG | 2 cut(s) | 494, 527 |
| FriOI | GRGCYC | 2 cut(s) | 41, 423 |
| Fsp4HI | GCNGC | 4 cut(s) | 239, 302, 432, 570 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 4 cut(s) | 239, 302, 432, 570 |
| HaeIII | GGCC | 6 cut(s) | 248, 257, 311, 329, 434, 605 |
| HapII | CCGG | 1 cut(s) | 294 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1II | CATG | 1 cut(s) | 161 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HindIII | AAGCTT | 1 cut(s) | 593 |
| HinfI | GANTC | 2 cut(s) | 275, 380 |
| HpaII | CCGG | 1 cut(s) | 294 |
| Hpy188I | TCNGA | 4 cut(s) | 48, 94, 385, 600 |
| Hpy188III | TCNNGA | 5 cut(s) | 140, 158, 458, 475, 530 |
| HpyAV | CCTTC | 7 cut(s) | 223, 265, 445, 472, 499, 550, 595 |
| HpyCH4III | ACNGT | 1 cut(s) | 80 |
| HpyCH4V | TGCA | 5 cut(s) | 304, 397, 470, 485, 555 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 254 |
| HpyF3I | CTNAG | 2 cut(s) | 93, 105 |
| Hsp92II | CATG | 1 cut(s) | 161 |
| HspAI | GCGC | 1 cut(s) | 5 |
| Kzo9I | GATC | 3 cut(s) | 136, 460, 524 |
| LguI | GCTCTTC | 1 cut(s) | 360 |
| LmnI | GCTCC | 4 cut(s) | 10, 44, 426, 454 |
| LpnPI | CCDG | 4 cut(s) | 13, 203, 227, 307 |
| Lsp1109I | GCAGC | 2 cut(s) | 288, 556 |
| LweI | GCATC | 3 cut(s) | 119, 397, 472 |
| MalI | GATC | 3 cut(s) | 138, 462, 526 |
| MbiI | CCGCTC | 2 cut(s) | 44, 370 |
| MboI | GATC | 3 cut(s) | 136, 460, 524 |
| MboII | GAAGA | 4 cut(s) | 60, 263, 347, 377 |
| MhlI | GDGCHC | 2 cut(s) | 41, 423 |
| MluCI | AATT | 2 cut(s) | 280, 497 |
| MmeI | TCCRAC | 1 cut(s) | 186 |
| MseI | TTAA | 2 cut(s) | 323, 500 |
| MspI | CCGG | 1 cut(s) | 294 |
| MvnI | CGCG | 1 cut(s) | 7 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 254 |
| NdeII | GATC | 3 cut(s) | 136, 460, 524 |
| NlaIII | CATG | 1 cut(s) | 161 |
| NlaIV | GGNNCC | 1 cut(s) | 40 |
| NmeAIII | GCCGAG | 2 cut(s) | 130, 436 |
| PagI | TCATGA | 1 cut(s) | 157 |
| PceI | AGGCCT | 1 cut(s) | 329 |
| PciSI | GCTCTTC | 1 cut(s) | 360 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 408 |
| PfeI | GAWTC | 2 cut(s) | 275, 380 |
| PinAI | ACCGGT | 1 cut(s) | 293 |
| PkrI | GCNGC | 4 cut(s) | 240, 303, 433, 571 |
| Psp124BI | GAGCTC | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 1 cut(s) | 40 |
| PspPI | GGNCC | 2 cut(s) | 309, 352 |
| RsaI | GTAC | 1 cut(s) | 538 |
| RsaNI | GTAC | 1 cut(s) | 537 |
| SacI | GAGCTC | 1 cut(s) | 423 |
| SapI | GCTCTTC | 1 cut(s) | 360 |
| SaqAI | TTAA | 2 cut(s) | 323, 500 |
| SatI | GCNGC | 4 cut(s) | 239, 302, 432, 570 |
| Sau3AI | GATC | 3 cut(s) | 136, 460, 524 |
| Sau96I | GGNCC | 2 cut(s) | 309, 352 |
| SduI | GDGCHC | 2 cut(s) | 41, 423 |
| SfaNI | GCATC | 3 cut(s) | 119, 397, 472 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 254 |
| SinI | GGWCC | 1 cut(s) | 352 |
| Sse9I | AATT | 2 cut(s) | 280, 497 |
| SseBI | AGGCCT | 1 cut(s) | 329 |
| SsiI | CCGC | 7 cut(s) | 7, 42, 169, 238, 355, 370, 431 |
| SstI | GAGCTC | 1 cut(s) | 423 |
| StuI | AGGCCT | 1 cut(s) | 329 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 1 cut(s) | 80 |
| TaqI | TCGA | 3 cut(s) | 139, 438, 474 |
| TaqII | GACCGA | 1 cut(s) | 590 |
| TasI | AATT | 2 cut(s) | 280, 497 |
| TauI | GCSGC | 2 cut(s) | 241, 434 |
| TfiI | GAWTC | 2 cut(s) | 275, 380 |
| Tru1I | TTAA | 2 cut(s) | 323, 500 |
| Tru9I | TTAA | 2 cut(s) | 323, 500 |
| TseI | GCWGC | 2 cut(s) | 301, 569 |
| TspDTI | ATGAA | 1 cut(s) | 146 |
| TspGWI | ACGGA | 1 cut(s) | 413 |
| VpaK11BI | GGWCC | 1 cut(s) | 352 |