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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 7 |
| AccII | CGCG | 1 cut(s) | 230 |
| AciI | CCGC | 8 cut(s) | 7, 40, 71, 219, 230, 310, 325, 372 |
| AclWI | GGATC | 3 cut(s) | 84, 272, 399 |
| AcoI | YGGCCR | 2 cut(s) | 231, 356 |
| AfaI | GTAC | 1 cut(s) | 336 |
| AluBI | AGCT | 1 cut(s) | 37 |
| AluI | AGCT | 1 cut(s) | 37 |
| AlwI | GGATC | 3 cut(s) | 84, 272, 399 |
| Ama87I | CYCGRG | 1 cut(s) | 11 |
| AoxI | GGCC | 5 cut(s) | 45, 208, 231, 349, 356 |
| ApaI | GGGCCC | 1 cut(s) | 353 |
| ApeKI | GCWGC | 1 cut(s) | 239 |
| AspS9I | GGNCC | 2 cut(s) | 349, 350 |
| AvaI | CYCGRG | 1 cut(s) | 11 |
| BaeGI | GKGCMC | 1 cut(s) | 353 |
| BalI | TGGCCA | 1 cut(s) | 358 |
| BanII | GRGCYC | 1 cut(s) | 353 |
| BbvI | GCAGC | 1 cut(s) | 251 |
| BccI | CCATC | 3 cut(s) | 50, 149, 184 |
| BfaI | CTAG | 1 cut(s) | 261 |
| BisI | GCNGC | 4 cut(s) | 8, 220, 231, 240 |
| BlpI | GCTNAGC | 1 cut(s) | 290 |
| BlsI | GCNGC | 4 cut(s) | 9, 221, 232, 241 |
| BmeT110I | CYCGRG | 1 cut(s) | 11 |
| BmgT120I | GGNCC | 2 cut(s) | 349, 350 |
| BmiI | GGNNCC | 2 cut(s) | 350, 351 |
| BmsI | GCATC | 1 cut(s) | 307 |
| BpmI | CTGGAG | 1 cut(s) | 295 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 290 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 2 cut(s) | 353, 359 |
| Bse118I | RCCGGY | 1 cut(s) | 47 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseDI | CCNNGG | 2 cut(s) | 353, 359 |
| BseGI | GGATG | 2 cut(s) | 61, 382 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseSI | GKGCMC | 1 cut(s) | 353 |
| BseXI | GCAGC | 1 cut(s) | 251 |
| Bsh1236I | CGCG | 1 cut(s) | 230 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshFI | GGCC | 5 cut(s) | 47, 210, 233, 351, 358 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiHKCI | CYCGRG | 1 cut(s) | 11 |
| BsiSI | CCGG | 1 cut(s) | 48 |
| BslFI | GGGAC | 1 cut(s) | 317 |
| BsmFI | GGGAC | 1 cut(s) | 317 |
| BsnI | GGCC | 5 cut(s) | 47, 210, 233, 351, 358 |
| BsoBI | CYCGRG | 1 cut(s) | 11 |
| Bsp120I | GGGCCC | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 1 cut(s) | 353 |
| Bsp143I | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 290 |
| BspACI | CCGC | 8 cut(s) | 7, 40, 71, 219, 230, 310, 325, 372 |
| BspANI | GGCC | 5 cut(s) | 47, 210, 233, 351, 358 |
| BspCNI | CTCAG | 1 cut(s) | 282 |
| BspFNI | CGCG | 1 cut(s) | 230 |
| BspLI | GGNNCC | 2 cut(s) | 350, 351 |
| BspPI | GGATC | 3 cut(s) | 84, 272, 399 |
| BsrBI | CCGCTC | 1 cut(s) | 7 |
| BsrFI | RCCGGY | 1 cut(s) | 47 |
| BssAI | RCCGGY | 1 cut(s) | 47 |
| BssECI | CCNNGG | 2 cut(s) | 353, 359 |
| BssMI | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| BssT1I | CCWWGG | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 2 cut(s) | 296, 312 |
| BstDEI | CTNAG | 1 cut(s) | 290 |
| BstDSI | CCRYGG | 1 cut(s) | 353 |
| BstF5I | GGATG | 2 cut(s) | 61, 382 |
| BstFNI | CGCG | 1 cut(s) | 230 |
| BstKTI | GATC | 5 cut(s) | 79, 92, 228, 267, 394 |
| BstMBI | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 202, 216, 236, 239, 295 |
| BstNSI | RCATGY | 2 cut(s) | 205, 298 |
| BstSLI | GKGCMC | 1 cut(s) | 353 |
| BstUI | CGCG | 1 cut(s) | 230 |
| BstV1I | GCAGC | 1 cut(s) | 251 |
| BstX2I | RGATCY | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 76 |
| BsuRI | GGCC | 5 cut(s) | 47, 210, 233, 351, 358 |
| BtgI | CCRYGG | 1 cut(s) | 353 |
| BtsCI | GGATG | 2 cut(s) | 61, 382 |
| Cac8I | GCNNGC | 2 cut(s) | 296, 312 |
| Cfr10I | RCCGGY | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 2 cut(s) | 349, 350 |
| Csp6I | GTAC | 1 cut(s) | 335 |
| CviAII | CATG | 3 cut(s) | 202, 295, 400 |
| CviJI | RGCY | 9 cut(s) | 10, 37, 47, 96, 122, 210, 233, 351, 358 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 37, 47, 96, 122, 210, 233, 351, 358 |
| CviQI | GTAC | 1 cut(s) | 335 |
| DdeI | CTNAG | 1 cut(s) | 290 |
| DpnI | GATC | 5 cut(s) | 78, 91, 227, 266, 393 |
| DpnII | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| EaeI | YGGCCR | 2 cut(s) | 231, 356 |
| EciI | GGCGGA | 1 cut(s) | 340 |
| Eco130I | CCWWGG | 1 cut(s) | 359 |
| Eco24I | GRGCYC | 1 cut(s) | 353 |
| Eco88I | CYCGRG | 1 cut(s) | 11 |
| EcoO109I | RGGNCCY | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 1 cut(s) | 359 |
| EcoT22I | ATGCAT | 1 cut(s) | 300 |
| EcoT38I | GRGCYC | 1 cut(s) | 353 |
| ErhI | CCWWGG | 1 cut(s) | 359 |
| FaeI | CATG | 3 cut(s) | 205, 298, 403 |
| FaiI | YATR | 3 cut(s) | 203, 296, 401 |
| FaqI | GGGAC | 1 cut(s) | 317 |
| FatI | CATG | 3 cut(s) | 201, 294, 399 |
| FauI | CCCGC | 2 cut(s) | 303, 365 |
| Fnu4HI | GCNGC | 4 cut(s) | 8, 220, 231, 240 |
| FokI | GGATG | 2 cut(s) | 68, 389 |
| FriOI | GRGCYC | 1 cut(s) | 353 |
| Fsp4HI | GCNGC | 4 cut(s) | 8, 220, 231, 240 |
| FspBI | CTAG | 1 cut(s) | 261 |
| GluI | GCNGC | 4 cut(s) | 8, 220, 231, 240 |
| GsuI | CTGGAG | 1 cut(s) | 295 |
| HaeIII | GGCC | 5 cut(s) | 47, 210, 233, 351, 358 |
| HapII | CCGG | 1 cut(s) | 48 |
| Hin1II | CATG | 3 cut(s) | 205, 298, 403 |
| HpaII | CCGG | 1 cut(s) | 48 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 255 |
| Hpy188III | TCNNGA | 3 cut(s) | 53, 274, 302 |
| HpyAV | CCTTC | 2 cut(s) | 11, 133 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 239, 298 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 202, 216, 236, 239, 295 |
| HpyF3I | CTNAG | 1 cut(s) | 290 |
| Hsp92II | CATG | 3 cut(s) | 205, 298, 403 |
| Kzo9I | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| LmnI | GCTCC | 3 cut(s) | 4, 42, 276 |
| LpnPI | CCDG | 2 cut(s) | 61, 259 |
| Lsp1109I | GCAGC | 1 cut(s) | 251 |
| LweI | GCATC | 1 cut(s) | 307 |
| MaeI | CTAG | 1 cut(s) | 261 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 5 cut(s) | 78, 91, 227, 266, 393 |
| MbiI | CCGCTC | 1 cut(s) | 7 |
| MboI | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| MboII | GAAGA | 3 cut(s) | 77, 121, 199 |
| MflI | RGATCY | 1 cut(s) | 76 |
| MhlI | GDGCHC | 1 cut(s) | 353 |
| MlsI | TGGCCA | 1 cut(s) | 358 |
| MluNI | TGGCCA | 1 cut(s) | 358 |
| MmeI | TCCRAC | 1 cut(s) | 233 |
| MnlI | CCTC | 6 cut(s) | 200, 274, 315, 321, 389, 400 |
| Mox20I | TGGCCA | 1 cut(s) | 358 |
| Mph1103I | ATGCAT | 1 cut(s) | 300 |
| MscI | TGGCCA | 1 cut(s) | 358 |
| MseI | TTAA | 1 cut(s) | 150 |
| Msp20I | TGGCCA | 1 cut(s) | 358 |
| MspI | CCGG | 1 cut(s) | 48 |
| MvnI | CGCG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 202, 216, 236, 239, 295 |
| NdeII | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| NlaIII | CATG | 3 cut(s) | 205, 298, 403 |
| NlaIV | GGNNCC | 2 cut(s) | 350, 351 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| NsiI | ATGCAT | 1 cut(s) | 300 |
| NspI | RCATGY | 2 cut(s) | 205, 298 |
| PaeI | GCATGC | 1 cut(s) | 298 |
| PkrI | GCNGC | 4 cut(s) | 9, 221, 232, 241 |
| PspN4I | GGNNCC | 2 cut(s) | 350, 351 |
| PspOMI | GGGCCC | 1 cut(s) | 349 |
| PspPI | GGNCC | 2 cut(s) | 349, 350 |
| PsuI | RGATCY | 1 cut(s) | 76 |
| RsaI | GTAC | 1 cut(s) | 336 |
| RsaNI | GTAC | 1 cut(s) | 335 |
| SaqAI | TTAA | 1 cut(s) | 150 |
| SatI | GCNGC | 4 cut(s) | 8, 220, 231, 240 |
| Sau3AI | GATC | 5 cut(s) | 76, 89, 225, 264, 391 |
| Sau96I | GGNCC | 2 cut(s) | 349, 350 |
| SduI | GDGCHC | 1 cut(s) | 353 |
| SetI | ASST | 4 cut(s) | 39, 285, 332, 371 |
| SfaNI | GCATC | 1 cut(s) | 307 |
| SphI | GCATGC | 1 cut(s) | 298 |
| SsiI | CCGC | 8 cut(s) | 7, 40, 71, 219, 230, 310, 325, 372 |
| SspMI | CTAG | 1 cut(s) | 261 |
| StyI | CCWWGG | 1 cut(s) | 359 |
| TaqI | TCGA | 4 cut(s) | 28, 88, 146, 394 |
| TauI | GCSGC | 3 cut(s) | 10, 222, 233 |
| Tru1I | TTAA | 1 cut(s) | 150 |
| Tru9I | TTAA | 1 cut(s) | 150 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| TseI | GCWGC | 1 cut(s) | 239 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspDTI | ATGAA | 1 cut(s) | 128 |
| XceI | RCATGY | 2 cut(s) | 205, 298 |
| XspI | CTAG | 1 cut(s) | 261 |
| Zsp2I | ATGCAT | 1 cut(s) | 300 |