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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 338 |
| AccII | CGCG | 1 cut(s) | 182 |
| AccIII | TCCGGA | 2 cut(s) | 264, 282 |
| AciI | CCGC | 4 cut(s) | 43, 99, 112, 338 |
| AclWI | GGATC | 2 cut(s) | 274, 287 |
| AcoI | YGGCCR | 1 cut(s) | 21 |
| AcsI | RAATTY | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 42, 43, 209, 276, 289 |
| AjnI | CCWGG | 1 cut(s) | 88 |
| AluBI | AGCT | 2 cut(s) | 106, 227 |
| AluI | AGCT | 2 cut(s) | 106, 227 |
| Alw26I | GTCTC | 1 cut(s) | 182 |
| AlwI | GGATC | 2 cut(s) | 274, 287 |
| Aor13HI | TCCGGA | 2 cut(s) | 264, 282 |
| AoxI | GGCC | 5 cut(s) | 21, 33, 52, 150, 165 |
| ApoI | RAATTY | 1 cut(s) | 299 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 5 cut(s) | 34, 150, 200, 267, 317 |
| AsuC2I | CCSGG | 1 cut(s) | 154 |
| AvaII | GGWCC | 3 cut(s) | 200, 267, 317 |
| BamHI | GGATCC | 1 cut(s) | 279 |
| BccI | CCATC | 1 cut(s) | 116 |
| BceAI | ACGGC | 1 cut(s) | 125 |
| BciT130I | CCWGG | 1 cut(s) | 90 |
| BcnI | CCSGG | 1 cut(s) | 154 |
| BcoDI | GTCTC | 1 cut(s) | 182 |
| BfaI | CTAG | 1 cut(s) | 8 |
| BfoI | RGCGCY | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 2 cut(s) | 90, 154 |
| Bme18I | GGWCC | 3 cut(s) | 200, 267, 317 |
| BmgT120I | GGNCC | 5 cut(s) | 34, 150, 200, 267, 317 |
| BmiI | GGNNCC | 2 cut(s) | 257, 281 |
| BmrFI | CCNGG | 2 cut(s) | 90, 154 |
| BmsI | GCATC | 1 cut(s) | 203 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 240, 272 |
| BpuMI | CCSGG | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 3 cut(s) | 55, 168, 242 |
| BsaWI | WCCGGW | 2 cut(s) | 264, 282 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 277, 307 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 42, 43, 209, 276, 289 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| BseAI | TCCGGA | 2 cut(s) | 264, 282 |
| BseBI | CCWGG | 1 cut(s) | 90 |
| BseDI | CCNNGG | 3 cut(s) | 55, 168, 242 |
| BseGI | GGATG | 2 cut(s) | 127, 218 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 42, 43, 209, 276, 289 |
| BseRI | GAGGAG | 3 cut(s) | 44, 63, 185 |
| Bsh1236I | CGCG | 1 cut(s) | 182 |
| BshFI | GGCC | 5 cut(s) | 23, 35, 54, 152, 167 |
| BsiSI | CCGG | 4 cut(s) | 20, 153, 265, 283 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 42, 43, 209, 276, 289 |
| BsmAI | GTCTC | 1 cut(s) | 182 |
| BsnI | GGCC | 5 cut(s) | 23, 35, 54, 152, 167 |
| Bsp13I | TCCGGA | 2 cut(s) | 264, 282 |
| Bsp143I | GATC | 1 cut(s) | 279 |
| Bsp68I | TCGCGA | 1 cut(s) | 182 |
| BspACI | CCGC | 4 cut(s) | 43, 99, 112, 338 |
| BspANI | GGCC | 5 cut(s) | 23, 35, 54, 152, 167 |
| BspEI | TCCGGA | 2 cut(s) | 264, 282 |
| BspFNI | CGCG | 1 cut(s) | 182 |
| BspLI | GGNNCC | 2 cut(s) | 257, 281 |
| BspPI | GGATC | 2 cut(s) | 274, 287 |
| BsrBI | CCGCTC | 1 cut(s) | 338 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssECI | CCNNGG | 3 cut(s) | 55, 168, 242 |
| BssMI | GATC | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 1 cut(s) | 242 |
| Bst2UI | CCWGG | 1 cut(s) | 90 |
| Bst4CI | ACNGT | 2 cut(s) | 271, 321 |
| BstC8I | GCNNGC | 2 cut(s) | 15, 21 |
| BstF5I | GGATG | 2 cut(s) | 127, 218 |
| BstFNI | CGCG | 1 cut(s) | 182 |
| BstH2I | RGCGCY | 1 cut(s) | 20 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 1 cut(s) | 282 |
| BstMAI | GTCTC | 1 cut(s) | 182 |
| BstMBI | GATC | 1 cut(s) | 279 |
| BstNI | CCWGG | 1 cut(s) | 90 |
| BstSCI | CCNGG | 2 cut(s) | 88, 152 |
| BstUI | CGCG | 1 cut(s) | 182 |
| BstX2I | RGATCY | 1 cut(s) | 279 |
| BstYI | RGATCY | 1 cut(s) | 279 |
| BsuRI | GGCC | 5 cut(s) | 23, 35, 54, 152, 167 |
| BtsCI | GGATG | 2 cut(s) | 127, 218 |
| BtuMI | TCGCGA | 1 cut(s) | 182 |
| Cac8I | GCNNGC | 2 cut(s) | 15, 21 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 5 cut(s) | 34, 150, 200, 267, 317 |
| CpoI | CGGWCCG | 1 cut(s) | 267 |
| CspI | CGGWCCG | 1 cut(s) | 267 |
| CviJI | RGCY | 9 cut(s) | 23, 35, 54, 106, 152, 157, 167, 227, 256 |
| CviKI_1 | RGCY | 9 cut(s) | 23, 35, 54, 106, 152, 157, 167, 227, 256 |
| DpnI | GATC | 1 cut(s) | 281 |
| DpnII | GATC | 1 cut(s) | 279 |
| EaeI | YGGCCR | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 1 cut(s) | 242 |
| Eco47I | GGWCC | 3 cut(s) | 200, 267, 317 |
| EcoRII | CCWGG | 1 cut(s) | 88 |
| EcoT14I | CCWWGG | 1 cut(s) | 242 |
| ErhI | CCWWGG | 1 cut(s) | 242 |
| FaiI | YATR | 4 cut(s) | 26, 128, 326, 333 |
| FauI | CCCGC | 2 cut(s) | 36, 92 |
| FokI | GGATG | 2 cut(s) | 134, 225 |
| FspBI | CTAG | 1 cut(s) | 8 |
| GlaI | GCGC | 1 cut(s) | 18 |
| HaeII | RGCGCY | 1 cut(s) | 20 |
| HaeIII | GGCC | 5 cut(s) | 23, 35, 54, 152, 167 |
| HapII | CCGG | 4 cut(s) | 20, 153, 265, 283 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HinfI | GANTC | 1 cut(s) | 175 |
| HpaII | CCGG | 4 cut(s) | 20, 153, 265, 283 |
| Hpy188III | TCNNGA | 3 cut(s) | 181, 265, 283 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 1 cut(s) | 308 |
| HpyCH4III | ACNGT | 2 cut(s) | 271, 321 |
| HpyCH4V | TGCA | 1 cut(s) | 305 |
| HspAI | GCGC | 1 cut(s) | 17 |
| Kpn2I | TCCGGA | 2 cut(s) | 264, 282 |
| KroI | GCCGGC | 1 cut(s) | 19 |
| KroNI | GCCGGC | 1 cut(s) | 21 |
| Kzo9I | GATC | 1 cut(s) | 279 |
| LmnI | GCTCC | 5 cut(s) | 74, 224, 261, 335, 340 |
| LpnPI | CCDG | 6 cut(s) | 33, 75, 102, 166, 278, 296 |
| LweI | GCATC | 1 cut(s) | 203 |
| MaeI | CTAG | 1 cut(s) | 8 |
| MalI | GATC | 1 cut(s) | 281 |
| MbiI | CCGCTC | 1 cut(s) | 338 |
| MboI | GATC | 1 cut(s) | 279 |
| MflI | RGATCY | 1 cut(s) | 279 |
| MluCI | AATT | 1 cut(s) | 299 |
| MlyI | GAGTC | 1 cut(s) | 184 |
| MmeI | TCCRAC | 1 cut(s) | 202 |
| MroI | TCCGGA | 2 cut(s) | 264, 282 |
| MroNI | GCCGGC | 1 cut(s) | 19 |
| MspI | CCGG | 4 cut(s) | 20, 153, 265, 283 |
| MspR9I | CCNGG | 2 cut(s) | 90, 154 |
| MvaI | CCWGG | 1 cut(s) | 90 |
| MvnI | CGCG | 1 cut(s) | 182 |
| NaeI | GCCGGC | 1 cut(s) | 21 |
| NciI | CCSGG | 1 cut(s) | 154 |
| NdeII | GATC | 1 cut(s) | 279 |
| NgoMIV | GCCGGC | 1 cut(s) | 19 |
| NlaIV | GGNNCC | 2 cut(s) | 257, 281 |
| NmeAIII | GCCGAG | 3 cut(s) | 80, 193, 242 |
| NruI | TCGCGA | 1 cut(s) | 182 |
| PdiI | GCCGGC | 1 cut(s) | 21 |
| PleI | GAGTC | 1 cut(s) | 183 |
| PpsI | GAGTC | 1 cut(s) | 183 |
| Psp6I | CCWGG | 1 cut(s) | 88 |
| PspGI | CCWGG | 1 cut(s) | 88 |
| PspN4I | GGNNCC | 2 cut(s) | 257, 281 |
| PspPI | GGNCC | 5 cut(s) | 34, 150, 200, 267, 317 |
| PsuI | RGATCY | 1 cut(s) | 279 |
| RruI | TCGCGA | 1 cut(s) | 182 |
| Rsr2I | CGGWCCG | 1 cut(s) | 267 |
| RsrII | CGGWCCG | 1 cut(s) | 267 |
| Sau3AI | GATC | 1 cut(s) | 279 |
| Sau96I | GGNCC | 5 cut(s) | 34, 150, 200, 267, 317 |
| SchI | GAGTC | 1 cut(s) | 184 |
| ScrFI | CCNGG | 2 cut(s) | 90, 154 |
| SetI | ASST | 7 cut(s) | 91, 108, 134, 198, 202, 229, 290 |
| SfaNI | GCATC | 1 cut(s) | 203 |
| SinI | GGWCC | 3 cut(s) | 200, 267, 317 |
| Sse9I | AATT | 1 cut(s) | 299 |
| SsiI | CCGC | 4 cut(s) | 43, 99, 112, 338 |
| SspMI | CTAG | 1 cut(s) | 8 |
| StyD4I | CCNGG | 2 cut(s) | 88, 152 |
| StyI | CCWWGG | 1 cut(s) | 242 |
| TaaI | ACNGT | 2 cut(s) | 271, 321 |
| TasI | AATT | 1 cut(s) | 299 |
| TspGWI | ACGGA | 1 cut(s) | 131 |
| VpaK11BI | GGWCC | 3 cut(s) | 200, 267, 317 |
| XapI | RAATTY | 1 cut(s) | 299 |
| XspI | CTAG | 1 cut(s) | 8 |