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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccBSI | CCGCTC | 1 cut(s) | 180 |
| AciI | CCGC | 4 cut(s) | 20, 50, 180, 183 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 225 |
| AluBI | AGCT | 1 cut(s) | 157 |
| AluI | AGCT | 1 cut(s) | 157 |
| Alw26I | GTCTC | 2 cut(s) | 186, 228 |
| Ama87I | CYCGRG | 7 cut(s) | 8, 98, 110, 119, 189, 196, 218 |
| AoxI | GGCC | 2 cut(s) | 11, 52 |
| ApaI | GGGCCC | 1 cut(s) | 15 |
| AspS9I | GGNCC | 4 cut(s) | 11, 12, 52, 185 |
| AsuC2I | CCSGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| AvaI | CYCGRG | 7 cut(s) | 8, 98, 110, 119, 189, 196, 218 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| BaeGI | GKGCMC | 3 cut(s) | 9, 15, 83 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 2 cut(s) | 15, 74 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 141, 173 |
| BccI | CCATC | 1 cut(s) | 39 |
| BcnI | CCSGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| BcoDI | GTCTC | 2 cut(s) | 186, 228 |
| BfaI | CTAG | 2 cut(s) | 35, 84 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 78 |
| BisI | GCNGC | 1 cut(s) | 181 |
| BlsI | GCNGC | 1 cut(s) | 182 |
| Bme1390I | CCNGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmeT110I | CYCGRG | 7 cut(s) | 8, 98, 110, 119, 189, 196, 218 |
| BmgT120I | GGNCC | 4 cut(s) | 11, 12, 52, 185 |
| BmiI | GGNNCC | 5 cut(s) | 6, 13, 14, 24, 71 |
| BmrFI | CCNGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| BmrI | ACTGGG | 1 cut(s) | 157 |
| BmsI | GCATC | 2 cut(s) | 84, 105 |
| BmuI | ACTGGG | 1 cut(s) | 157 |
| BpuMI | CCSGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| BsaI | GGTCTC | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 5 cut(s) | 8, 55, 119, 217, 218 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 225 |
| Bse1I | ACTGG | 1 cut(s) | 163 |
| BseDI | CCNNGG | 5 cut(s) | 8, 55, 119, 217, 218 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 225 |
| BseNI | ACTGG | 1 cut(s) | 163 |
| BseSI | GKGCMC | 3 cut(s) | 9, 15, 83 |
| Bsh1285I | CGRYCG | 1 cut(s) | 47 |
| BshFI | GGCC | 2 cut(s) | 13, 54 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiEI | CGRYCG | 1 cut(s) | 47 |
| BsiHKCI | CYCGRG | 7 cut(s) | 8, 98, 110, 119, 189, 196, 218 |
| BsiSI | CCGG | 3 cut(s) | 9, 120, 219 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 225 |
| BsmAI | GTCTC | 2 cut(s) | 186, 228 |
| BsnI | GGCC | 2 cut(s) | 13, 54 |
| Bso31I | GGTCTC | 1 cut(s) | 228 |
| BsoBI | CYCGRG | 7 cut(s) | 8, 98, 110, 119, 189, 196, 218 |
| Bsp120I | GGGCCC | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 4 cut(s) | 9, 15, 74, 83 |
| Bsp143I | GATC | 2 cut(s) | 44, 239 |
| BspACI | CCGC | 4 cut(s) | 20, 50, 180, 183 |
| BspANI | GGCC | 2 cut(s) | 13, 54 |
| BspLI | GGNNCC | 5 cut(s) | 6, 13, 14, 24, 71 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTNI | GGTCTC | 1 cut(s) | 228 |
| BsrBI | CCGCTC | 1 cut(s) | 180 |
| BsrI | ACTGG | 1 cut(s) | 163 |
| BssECI | CCNNGG | 5 cut(s) | 8, 55, 119, 217, 218 |
| BssMI | GATC | 2 cut(s) | 44, 239 |
| Bst6I | CTCTTC | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 3 cut(s) | 52, 137, 178 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstKTI | GATC | 2 cut(s) | 47, 242 |
| BstMAI | GTCTC | 2 cut(s) | 186, 228 |
| BstMBI | GATC | 2 cut(s) | 44, 239 |
| BstMCI | CGRYCG | 1 cut(s) | 47 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 78, 141 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 6 cut(s) | 7, 8, 118, 119, 217, 218 |
| BstSLI | GKGCMC | 3 cut(s) | 9, 15, 83 |
| BstX2I | RGATCY | 1 cut(s) | 239 |
| BstYI | RGATCY | 1 cut(s) | 239 |
| BsuRI | GGCC | 2 cut(s) | 13, 54 |
| BtsIMutI | CAGTG | 1 cut(s) | 170 |
| Cac8I | GCNNGC | 3 cut(s) | 52, 137, 178 |
| Cfr13I | GGNCC | 4 cut(s) | 11, 12, 52, 185 |
| Cfr9I | CCCGGG | 3 cut(s) | 8, 119, 218 |
| CviAII | CATG | 2 cut(s) | 132, 136 |
| CviJI | RGCY | 6 cut(s) | 13, 54, 72, 105, 129, 157 |
| CviKI_1 | RGCY | 6 cut(s) | 13, 54, 72, 105, 129, 157 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| DpnI | GATC | 2 cut(s) | 46, 241 |
| DpnII | GATC | 2 cut(s) | 44, 239 |
| Eam1104I | CTCTTC | 1 cut(s) | 55 |
| EarI | CTCTTC | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 2 cut(s) | 15, 74 |
| Eco31I | GGTCTC | 1 cut(s) | 228 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 7 cut(s) | 8, 98, 110, 119, 189, 196, 218 |
| EcoO109I | RGGNCCY | 1 cut(s) | 12 |
| EcoT22I | ATGCAT | 1 cut(s) | 137 |
| EcoT38I | GRGCYC | 2 cut(s) | 15, 74 |
| FaeI | CATG | 2 cut(s) | 135, 139 |
| FaiI | YATR | 2 cut(s) | 133, 137 |
| FatI | CATG | 2 cut(s) | 131, 135 |
| FauI | CCCGC | 1 cut(s) | 43 |
| Fnu4HI | GCNGC | 1 cut(s) | 181 |
| FriOI | GRGCYC | 2 cut(s) | 15, 74 |
| Fsp4HI | GCNGC | 1 cut(s) | 181 |
| FspBI | CTAG | 2 cut(s) | 35, 84 |
| GluI | GCNGC | 1 cut(s) | 181 |
| HaeIII | GGCC | 2 cut(s) | 13, 54 |
| HapII | CCGG | 3 cut(s) | 9, 120, 219 |
| Hin1II | CATG | 2 cut(s) | 135, 139 |
| HinfI | GANTC | 1 cut(s) | 194 |
| HpaII | CCGG | 3 cut(s) | 9, 120, 219 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy188III | TCNNGA | 6 cut(s) | 42, 91, 100, 112, 191, 198 |
| HpyAV | CCTTC | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 78, 141 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| Hsp92II | CATG | 2 cut(s) | 135, 139 |
| Kzo9I | GATC | 2 cut(s) | 44, 239 |
| LmnI | GCTCC | 1 cut(s) | 69 |
| LpnPI | CCDG | 4 cut(s) | 22, 133, 176, 232 |
| LweI | GCATC | 2 cut(s) | 84, 105 |
| MaeI | CTAG | 2 cut(s) | 35, 84 |
| MaeIII | GTNAC | 1 cut(s) | 203 |
| MalI | GATC | 2 cut(s) | 46, 241 |
| MbiI | CCGCTC | 1 cut(s) | 180 |
| MboI | GATC | 2 cut(s) | 44, 239 |
| MboII | GAAGA | 1 cut(s) | 72 |
| MflI | RGATCY | 1 cut(s) | 239 |
| MhlI | GDGCHC | 4 cut(s) | 9, 15, 74, 83 |
| MlyI | GAGTC | 1 cut(s) | 188 |
| MmeI | TCCRAC | 1 cut(s) | 50 |
| MnlI | CCTC | 6 cut(s) | 50, 56, 198, 202, 226, 230 |
| Mph1103I | ATGCAT | 1 cut(s) | 137 |
| MspI | CCGG | 3 cut(s) | 9, 120, 219 |
| MspR9I | CCNGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 78, 141 |
| NciI | CCSGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| NdeII | GATC | 2 cut(s) | 44, 239 |
| NlaIII | CATG | 2 cut(s) | 135, 139 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 13, 14, 24, 71 |
| NmeAIII | GCCGAG | 2 cut(s) | 80, 205 |
| NmuCI | GTSAC | 1 cut(s) | 203 |
| NsiI | ATGCAT | 1 cut(s) | 137 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeI | GCATGC | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 3 cut(s) | 98, 110, 189 |
| PkrI | GCNGC | 1 cut(s) | 182 |
| Ple19I | CGATCG | 1 cut(s) | 47 |
| PleI | GAGTC | 1 cut(s) | 188 |
| PpsI | GAGTC | 1 cut(s) | 188 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 13, 14, 24, 71 |
| PspOMI | GGGCCC | 1 cut(s) | 11 |
| PspPI | GGNCC | 4 cut(s) | 11, 12, 52, 185 |
| PsuI | RGATCY | 1 cut(s) | 239 |
| PvuI | CGATCG | 1 cut(s) | 47 |
| SatI | GCNGC | 1 cut(s) | 181 |
| Sau3AI | GATC | 2 cut(s) | 44, 239 |
| Sau96I | GGNCC | 4 cut(s) | 11, 12, 52, 185 |
| SchI | GAGTC | 1 cut(s) | 188 |
| ScrFI | CCNGG | 6 cut(s) | 9, 10, 120, 121, 219, 220 |
| SduI | GDGCHC | 4 cut(s) | 9, 15, 74, 83 |
| SetI | ASST | 5 cut(s) | 67, 89, 150, 154, 159 |
| SfaNI | GCATC | 2 cut(s) | 84, 105 |
| Sfr274I | CTCGAG | 3 cut(s) | 98, 110, 189 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SlaI | CTCGAG | 3 cut(s) | 98, 110, 189 |
| SmaI | CCCGGG | 3 cut(s) | 10, 121, 220 |
| SmlI | CTYRAG | 3 cut(s) | 98, 110, 189 |
| SmoI | CTYRAG | 3 cut(s) | 98, 110, 189 |
| SphI | GCATGC | 1 cut(s) | 139 |
| SrfI | GCCCGGGC | 1 cut(s) | 10 |
| SsiI | CCGC | 4 cut(s) | 20, 50, 180, 183 |
| SspMI | CTAG | 2 cut(s) | 35, 84 |
| StyD4I | CCNGG | 6 cut(s) | 7, 8, 118, 119, 217, 218 |
| TaqI | TCGA | 5 cut(s) | 43, 92, 99, 111, 190 |
| TauI | GCSGC | 1 cut(s) | 183 |
| TscAI | CASTG | 1 cut(s) | 170 |
| TseFI | GTSAC | 1 cut(s) | 203 |
| Tsp45I | GTSAC | 1 cut(s) | 203 |
| TspMI | CCCGGG | 3 cut(s) | 8, 119, 218 |
| TspRI | CASTG | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XhoI | CTCGAG | 3 cut(s) | 98, 110, 189 |
| XmaI | CCCGGG | 3 cut(s) | 8, 119, 218 |
| XspI | CTAG | 2 cut(s) | 35, 84 |
| Zsp2I | ATGCAT | 1 cut(s) | 137 |