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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 572 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 211 |
| AccI | GTMKAC | 1 cut(s) | 819 |
| AciI | CCGC | 2 cut(s) | 391, 477 |
| AclWI | GGATC | 1 cut(s) | 537 |
| AcoI | YGGCCR | 2 cut(s) | 388, 809 |
| AcuI | CTGAAG | 2 cut(s) | 483, 701 |
| AcvI | CACGTG | 1 cut(s) | 349 |
| AfaI | GTAC | 1 cut(s) | 297 |
| AfeI | AGCGCT | 1 cut(s) | 439 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 211, 500 |
| AgsI | TTSAA | 7 cut(s) | 55, 194, 290, 435, 647, 760, 770 |
| AluBI | AGCT | 4 cut(s) | 143, 559, 631, 709 |
| AluI | AGCT | 4 cut(s) | 143, 559, 631, 709 |
| Alw26I | GTCTC | 2 cut(s) | 364, 421 |
| AlwI | GGATC | 1 cut(s) | 537 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 532 |
| Ama87I | CYCGRG | 1 cut(s) | 361 |
| Aor51HI | AGCGCT | 1 cut(s) | 439 |
| AoxI | GGCC | 5 cut(s) | 31, 41, 105, 388, 809 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 144 |
| AspLEI | GCGC | 1 cut(s) | 440 |
| AspS9I | GGNCC | 5 cut(s) | 106, 365, 408, 565, 775 |
| AsuHPI | GGTGA | 1 cut(s) | 563 |
| AsuNHI | GCTAGC | 1 cut(s) | 709 |
| AvaI | CYCGRG | 1 cut(s) | 361 |
| AvaII | GGWCC | 4 cut(s) | 365, 408, 565, 775 |
| AxyI | CCTNAGG | 1 cut(s) | 728 |
| BaeGI | GKGCMC | 1 cut(s) | 736 |
| BbrPI | CACGTG | 1 cut(s) | 349 |
| BbvCI | CCTCAGC | 2 cut(s) | 381, 632 |
| BccI | CCATC | 1 cut(s) | 667 |
| BciVI | GTATCC | 1 cut(s) | 715 |
| BcoDI | GTCTC | 2 cut(s) | 364, 421 |
| BfaI | CTAG | 1 cut(s) | 710 |
| BfoI | RGCGCY | 1 cut(s) | 441 |
| BfuI | GTATCC | 1 cut(s) | 715 |
| BisI | GCNGC | 1 cut(s) | 391 |
| BlsI | GCNGC | 1 cut(s) | 392 |
| Bme18I | GGWCC | 4 cut(s) | 365, 408, 565, 775 |
| BmeT110I | CYCGRG | 1 cut(s) | 361 |
| BmgT120I | GGNCC | 5 cut(s) | 106, 365, 408, 565, 775 |
| BmiI | GGNNCC | 2 cut(s) | 342, 366 |
| BmsI | GCATC | 2 cut(s) | 647, 667 |
| BmtI | GCTAGC | 1 cut(s) | 713 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 344, 376 |
| Bpu10I | CCTNAGC | 2 cut(s) | 381, 632 |
| BpuEI | CTTGAG | 2 cut(s) | 288, 767 |
| BsaAI | YACGTR | 1 cut(s) | 349 |
| BsaI | GGTCTC | 2 cut(s) | 364, 421 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 211, 500 |
| Bse118I | RCCGGY | 2 cut(s) | 39, 298 |
| Bse1I | ACTGG | 1 cut(s) | 553 |
| Bse21I | CCTNAGG | 1 cut(s) | 728 |
| BseGI | GGATG | 5 cut(s) | 160, 485, 490, 682, 820 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 211, 500 |
| BseMII | CTCAG | 8 cut(s) | 238, 243, 372, 455, 539, 593, 623, 719 |
| BseNI | ACTGG | 1 cut(s) | 553 |
| BseRI | GAGGAG | 2 cut(s) | 335, 713 |
| BseSI | GKGCMC | 1 cut(s) | 736 |
| BseYI | CCCAGC | 2 cut(s) | 150, 536 |
| BsgI | GTGCAG | 1 cut(s) | 230 |
| BshFI | GGCC | 5 cut(s) | 33, 43, 107, 390, 811 |
| BsiHKCI | CYCGRG | 1 cut(s) | 361 |
| BsiSI | CCGG | 3 cut(s) | 40, 299, 812 |
| BslFI | GGGAC | 1 cut(s) | 28 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 211, 500 |
| BsmAI | GTCTC | 2 cut(s) | 364, 421 |
| BsmFI | GGGAC | 1 cut(s) | 28 |
| BsnI | GGCC | 5 cut(s) | 33, 43, 107, 390, 811 |
| Bso31I | GGTCTC | 2 cut(s) | 364, 421 |
| BsoBI | CYCGRG | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 736 |
| Bsp143I | GATC | 3 cut(s) | 166, 241, 529 |
| BspACI | CCGC | 2 cut(s) | 391, 477 |
| BspANI | GGCC | 5 cut(s) | 33, 43, 107, 390, 811 |
| BspCNI | CTCAG | 8 cut(s) | 237, 244, 373, 454, 538, 592, 624, 720 |
| BspLI | GGNNCC | 2 cut(s) | 342, 366 |
| BspOI | GCTAGC | 1 cut(s) | 713 |
| BspPI | GGATC | 1 cut(s) | 537 |
| BspQI | GCTCTTC | 1 cut(s) | 443 |
| BspTNI | GGTCTC | 2 cut(s) | 364, 421 |
| BsrFI | RCCGGY | 2 cut(s) | 39, 298 |
| BsrI | ACTGG | 1 cut(s) | 553 |
| BssAI | RCCGGY | 2 cut(s) | 39, 298 |
| BssMI | GATC | 3 cut(s) | 166, 241, 529 |
| BssNAI | GTATAC | 1 cut(s) | 820 |
| Bst1107I | GTATAC | 1 cut(s) | 820 |
| Bst6I | CTCTTC | 4 cut(s) | 189, 443, 462, 765 |
| BstBAI | YACGTR | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 5 cut(s) | 31, 41, 45, 520, 711 |
| BstDEI | CTNAG | 9 cut(s) | 224, 252, 381, 441, 525, 579, 632, 728, 753 |
| BstF5I | GGATG | 5 cut(s) | 160, 485, 490, 682, 820 |
| BstH2I | RGCGCY | 1 cut(s) | 441 |
| BstHHI | GCGC | 1 cut(s) | 440 |
| BstKTI | GATC | 3 cut(s) | 169, 244, 532 |
| BstMAI | GTCTC | 2 cut(s) | 364, 421 |
| BstMBI | GATC | 3 cut(s) | 166, 241, 529 |
| BstNSI | RCATGY | 1 cut(s) | 26 |
| BstSLI | GKGCMC | 1 cut(s) | 736 |
| BstX2I | RGATCY | 1 cut(s) | 529 |
| BstYI | RGATCY | 1 cut(s) | 529 |
| BstZ17I | GTATAC | 1 cut(s) | 820 |
| Bsu36I | CCTNAGG | 1 cut(s) | 728 |
| BsuI | GTATCC | 1 cut(s) | 715 |
| BsuRI | GGCC | 5 cut(s) | 33, 43, 107, 390, 811 |
| BtsCI | GGATG | 5 cut(s) | 160, 485, 490, 682, 820 |
| BtsIMutI | CAGTG | 2 cut(s) | 249, 546 |
| Cac8I | GCNNGC | 5 cut(s) | 31, 41, 45, 520, 711 |
| CaiI | CAGNNNCTG | 1 cut(s) | 532 |
| CfoI | GCGC | 1 cut(s) | 440 |
| Cfr10I | RCCGGY | 2 cut(s) | 39, 298 |
| Cfr13I | GGNCC | 5 cut(s) | 106, 365, 408, 565, 775 |
| Csp6I | GTAC | 1 cut(s) | 296 |
| CviAII | CATG | 6 cut(s) | 23, 116, 173, 421, 607, 737 |
| CviQI | GTAC | 1 cut(s) | 296 |
| DdeI | CTNAG | 9 cut(s) | 224, 252, 381, 441, 525, 579, 632, 728, 753 |
| DpnI | GATC | 3 cut(s) | 168, 243, 531 |
| DpnII | GATC | 3 cut(s) | 166, 241, 529 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 572 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 572 |
| EaeI | YGGCCR | 2 cut(s) | 388, 809 |
| Eam1104I | CTCTTC | 4 cut(s) | 189, 443, 462, 765 |
| EarI | CTCTTC | 4 cut(s) | 189, 443, 462, 765 |
| Eco31I | GGTCTC | 2 cut(s) | 364, 421 |
| Eco47I | GGWCC | 4 cut(s) | 365, 408, 565, 775 |
| Eco47III | AGCGCT | 1 cut(s) | 439 |
| Eco57I | CTGAAG | 2 cut(s) | 483, 701 |
| Eco72I | CACGTG | 1 cut(s) | 349 |
| Eco81I | CCTNAGG | 1 cut(s) | 728 |
| Eco88I | CYCGRG | 1 cut(s) | 361 |
| EcoO109I | RGGNCCY | 1 cut(s) | 775 |
| FaeI | CATG | 6 cut(s) | 26, 119, 176, 424, 610, 740 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 153, 185, 762, 794 |
| FaqI | GGGAC | 1 cut(s) | 28 |
| FatI | CATG | 6 cut(s) | 22, 115, 172, 420, 606, 736 |
| FblI | GTMKAC | 1 cut(s) | 819 |
| Fnu4HI | GCNGC | 1 cut(s) | 391 |
| FokI | GGATG | 4 cut(s) | 167, 477, 492, 689 |
| Fsp4HI | GCNGC | 1 cut(s) | 391 |
| FspBI | CTAG | 1 cut(s) | 710 |
| GlaI | GCGC | 1 cut(s) | 439 |
| GluI | GCNGC | 1 cut(s) | 391 |
| GsaI | CCCAGC | 2 cut(s) | 154, 540 |
| HaeII | RGCGCY | 1 cut(s) | 441 |
| HaeIII | GGCC | 5 cut(s) | 33, 43, 107, 390, 811 |
| HapII | CCGG | 3 cut(s) | 40, 299, 812 |
| HhaI | GCGC | 1 cut(s) | 440 |
| Hin1II | CATG | 6 cut(s) | 26, 119, 176, 424, 610, 740 |
| Hin6I | GCGC | 1 cut(s) | 438 |
| HinP1I | GCGC | 1 cut(s) | 438 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 2 cut(s) | 267, 458 |
| HpaII | CCGG | 3 cut(s) | 40, 299, 812 |
| HphI | GGTGA | 1 cut(s) | 563 |
| Hpy166II | GTNNAC | 6 cut(s) | 124, 368, 411, 485, 565, 820 |
| Hpy188I | TCNGA | 3 cut(s) | 444, 463, 582 |
| Hpy188III | TCNNGA | 6 cut(s) | 290, 305, 426, 527, 719, 760 |
| Hpy8I | GTNNAC | 6 cut(s) | 124, 368, 411, 485, 565, 820 |
| Hpy99I | CGWCG | 1 cut(s) | 275 |
| HpyAV | CCTTC | 4 cut(s) | 441, 641, 725, 757 |
| HpyCH4IV | ACGT | 2 cut(s) | 87, 348 |
| HpyCH4V | TGCA | 5 cut(s) | 247, 313, 606, 664, 785 |
| HpyF3I | CTNAG | 9 cut(s) | 224, 252, 381, 441, 525, 579, 632, 728, 753 |
| HpySE526I | ACGT | 2 cut(s) | 87, 348 |
| Hsp92II | CATG | 6 cut(s) | 26, 119, 176, 424, 610, 740 |
| HspAI | GCGC | 1 cut(s) | 438 |
| KroI | GCCGGC | 1 cut(s) | 39 |
| KroNI | GCCGGC | 1 cut(s) | 41 |
| Kzo9I | GATC | 3 cut(s) | 166, 241, 529 |
| LguI | GCTCTTC | 1 cut(s) | 443 |
| LweI | GCATC | 2 cut(s) | 647, 667 |
| MaeI | CTAG | 1 cut(s) | 710 |
| MaeII | ACGT | 2 cut(s) | 87, 348 |
| MaeIII | GTNAC | 2 cut(s) | 83, 551 |
| MalI | GATC | 3 cut(s) | 168, 243, 531 |
| MboI | GATC | 3 cut(s) | 166, 241, 529 |
| MboII | GAAGA | 8 cut(s) | 161, 170, 206, 457, 460, 476, 479, 782 |
| MflI | RGATCY | 1 cut(s) | 529 |
| MhlI | GDGCHC | 1 cut(s) | 736 |
| MluCI | AATT | 3 cut(s) | 65, 285, 610 |
| MroNI | GCCGGC | 1 cut(s) | 39 |
| MroXI | GAANNNNTTC | 1 cut(s) | 144 |
| MseI | TTAA | 1 cut(s) | 183 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspI | CCGG | 3 cut(s) | 40, 299, 812 |
| NaeI | GCCGGC | 1 cut(s) | 41 |
| NdeII | GATC | 3 cut(s) | 166, 241, 529 |
| NgoMIV | GCCGGC | 1 cut(s) | 39 |
| NheI | GCTAGC | 1 cut(s) | 709 |
| NlaIII | CATG | 6 cut(s) | 26, 119, 176, 424, 610, 740 |
| NlaIV | GGNNCC | 2 cut(s) | 342, 366 |
| NmeAIII | GCCGAG | 1 cut(s) | 706 |
| NmuCI | GTSAC | 2 cut(s) | 83, 551 |
| NspI | RCATGY | 1 cut(s) | 26 |
| PciSI | GCTCTTC | 1 cut(s) | 443 |
| PdiI | GCCGGC | 1 cut(s) | 41 |
| PdmI | GAANNNNTTC | 1 cut(s) | 144 |
| PfeI | GAWTC | 2 cut(s) | 267, 458 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 211 |
| PkrI | GCNGC | 1 cut(s) | 392 |
| PmaCI | CACGTG | 1 cut(s) | 349 |
| PmlI | CACGTG | 1 cut(s) | 349 |
| Ppu21I | YACGTR | 1 cut(s) | 349 |
| PpuMI | RGGWCCY | 1 cut(s) | 775 |
| Psp5II | RGGWCCY | 1 cut(s) | 775 |
| PspCI | CACGTG | 1 cut(s) | 349 |
| PspFI | CCCAGC | 2 cut(s) | 150, 536 |
| PspN4I | GGNNCC | 2 cut(s) | 342, 366 |
| PspPI | GGNCC | 5 cut(s) | 106, 365, 408, 565, 775 |
| PspPPI | RGGWCCY | 1 cut(s) | 775 |
| PstNI | CAGNNNCTG | 1 cut(s) | 532 |
| PsuI | RGATCY | 1 cut(s) | 529 |
| RsaI | GTAC | 1 cut(s) | 297 |
| RsaNI | GTAC | 1 cut(s) | 296 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SapI | GCTCTTC | 1 cut(s) | 443 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| SatI | GCNGC | 1 cut(s) | 391 |
| Sau3AI | GATC | 3 cut(s) | 166, 241, 529 |
| Sau96I | GGNCC | 5 cut(s) | 106, 365, 408, 565, 775 |
| SduI | GDGCHC | 1 cut(s) | 736 |
| SfaNI | GCATC | 2 cut(s) | 647, 667 |
| SinI | GGWCC | 4 cut(s) | 365, 408, 565, 775 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| SmlI | CTYRAG | 2 cut(s) | 303, 746 |
| SmoI | CTYRAG | 2 cut(s) | 303, 746 |
| Sse9I | AATT | 3 cut(s) | 65, 285, 610 |
| SsiI | CCGC | 2 cut(s) | 391, 477 |
| SspMI | CTAG | 1 cut(s) | 710 |
| TaiI | ACGT | 2 cut(s) | 90, 351 |
| TaqI | TCGA | 4 cut(s) | 231, 270, 336, 425 |
| TasI | AATT | 3 cut(s) | 65, 285, 610 |
| TauI | GCSGC | 1 cut(s) | 393 |
| TfiI | GAWTC | 2 cut(s) | 267, 458 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TscAI | CASTG | 2 cut(s) | 256, 553 |
| TseFI | GTSAC | 2 cut(s) | 83, 551 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 551 |
| TspDTI | ATGAA | 3 cut(s) | 161, 171, 623 |
| TspRI | CASTG | 2 cut(s) | 256, 553 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 4 cut(s) | 365, 408, 565, 775 |
| XceI | RCATGY | 1 cut(s) | 26 |
| XmiI | GTMKAC | 1 cut(s) | 819 |
| XmnI | GAANNNNTTC | 1 cut(s) | 144 |
| XspI | CTAG | 1 cut(s) | 710 |