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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 77 |
| AccBSI | CCGCTC | 1 cut(s) | 7 |
| AccII | CGCG | 1 cut(s) | 390 |
| AciI | CCGC | 4 cut(s) | 7, 131, 140, 395 |
| AclWI | GGATC | 4 cut(s) | 17, 153, 334, 341 |
| AcvI | CACGTG | 1 cut(s) | 427 |
| AfaI | GTAC | 2 cut(s) | 357, 447 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 349 |
| AgsI | TTSAA | 1 cut(s) | 173 |
| AjnI | CCWGG | 1 cut(s) | 249 |
| AluBI | AGCT | 3 cut(s) | 51, 106, 380 |
| AluI | AGCT | 3 cut(s) | 51, 106, 380 |
| AlwI | GGATC | 4 cut(s) | 17, 153, 334, 341 |
| AoxI | GGCC | 2 cut(s) | 276, 420 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| AsiSI | GCGATCGC | 1 cut(s) | 388 |
| AspLEI | GCGC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 1 cut(s) | 421 |
| AsuC2I | CCSGG | 2 cut(s) | 238, 344 |
| AsuNHI | GCTAGC | 1 cut(s) | 380 |
| BbrPI | CACGTG | 1 cut(s) | 427 |
| BbvI | GCAGC | 1 cut(s) | 299 |
| BccI | CCATC | 3 cut(s) | 119, 194, 253 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 20, 54, 200, 234, 276, 310 |
| BciT130I | CCWGG | 1 cut(s) | 251 |
| BcnI | CCSGG | 2 cut(s) | 238, 344 |
| BfaI | CTAG | 4 cut(s) | 117, 303, 381, 408 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 284 |
| BisI | GCNGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 1 cut(s) | 289 |
| Bme1390I | CCNGG | 3 cut(s) | 238, 251, 344 |
| BmgT120I | GGNCC | 1 cut(s) | 421 |
| BmrFI | CCNGG | 3 cut(s) | 238, 251, 344 |
| BmsI | GCATC | 1 cut(s) | 87 |
| BmtI | GCTAGC | 1 cut(s) | 384 |
| BpuMI | CCSGG | 2 cut(s) | 238, 344 |
| BsaAI | YACGTR | 1 cut(s) | 427 |
| BsaBI | GATNNNNATC | 2 cut(s) | 150, 338 |
| BsaJI | CCNNGG | 2 cut(s) | 87, 111 |
| BsaWI | WCCGGW | 2 cut(s) | 156, 358 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 349 |
| Bse8I | GATNNNNATC | 2 cut(s) | 150, 338 |
| BseBI | CCWGG | 1 cut(s) | 251 |
| BseDI | CCNNGG | 2 cut(s) | 87, 111 |
| BseGI | GGATG | 2 cut(s) | 130, 205 |
| BseJI | GATNNNNATC | 2 cut(s) | 150, 338 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 349 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BseXI | GCAGC | 1 cut(s) | 299 |
| BsgI | GTGCAG | 1 cut(s) | 284 |
| Bsh1236I | CGCG | 1 cut(s) | 390 |
| Bsh1285I | CGRYCG | 2 cut(s) | 44, 388 |
| BshFI | GGCC | 2 cut(s) | 278, 422 |
| BsiEI | CGRYCG | 2 cut(s) | 44, 388 |
| BsiSI | CCGG | 4 cut(s) | 157, 237, 343, 359 |
| BslFI | GGGAC | 2 cut(s) | 113, 387 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 349 |
| BsmFI | GGGAC | 2 cut(s) | 113, 387 |
| BsnI | GGCC | 2 cut(s) | 278, 422 |
| Bsp143I | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| Bsp68I | TCGCGA | 1 cut(s) | 390 |
| BspACI | CCGC | 4 cut(s) | 7, 131, 140, 395 |
| BspANI | GGCC | 2 cut(s) | 278, 422 |
| BspFNI | CGCG | 1 cut(s) | 390 |
| BspOI | GCTAGC | 1 cut(s) | 384 |
| BspPI | GGATC | 4 cut(s) | 17, 153, 334, 341 |
| BsrBI | CCGCTC | 1 cut(s) | 7 |
| BssECI | CCNNGG | 2 cut(s) | 87, 111 |
| BssMI | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| BssT1I | CCWWGG | 1 cut(s) | 111 |
| Bst2UI | CCWGG | 1 cut(s) | 251 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 271 |
| BstBAI | YACGTR | 1 cut(s) | 427 |
| BstC8I | GCNNGC | 5 cut(s) | 74, 108, 276, 300, 382 |
| BstF5I | GGATG | 2 cut(s) | 130, 205 |
| BstFNI | CGCG | 1 cut(s) | 390 |
| BstHHI | GCGC | 1 cut(s) | 78 |
| BstKTI | GATC | 7 cut(s) | 12, 44, 148, 296, 336, 342, 388 |
| BstMBI | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| BstMCI | CGRYCG | 2 cut(s) | 44, 388 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 271, 284 |
| BstNI | CCWGG | 1 cut(s) | 251 |
| BstNSI | RCATGY | 2 cut(s) | 274, 368 |
| BstSCI | CCNGG | 3 cut(s) | 236, 249, 342 |
| BstUI | CGCG | 1 cut(s) | 390 |
| BstV1I | GCAGC | 1 cut(s) | 299 |
| BstX2I | RGATCY | 1 cut(s) | 145 |
| BstYI | RGATCY | 1 cut(s) | 145 |
| BsuRI | GGCC | 2 cut(s) | 278, 422 |
| BtsCI | GGATG | 2 cut(s) | 130, 205 |
| BtsI | GCAGTG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| BtuMI | TCGCGA | 1 cut(s) | 390 |
| Cac8I | GCNNGC | 5 cut(s) | 74, 108, 276, 300, 382 |
| CfoI | GCGC | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 1 cut(s) | 421 |
| Csp6I | GTAC | 2 cut(s) | 356, 446 |
| CviAII | CATG | 3 cut(s) | 271, 365, 449 |
| CviQI | GTAC | 2 cut(s) | 356, 446 |
| DpnI | GATC | 7 cut(s) | 11, 43, 147, 295, 335, 341, 387 |
| DpnII | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| EciI | GGCGGA | 1 cut(s) | 410 |
| Eco130I | CCWWGG | 1 cut(s) | 111 |
| Eco72I | CACGTG | 1 cut(s) | 427 |
| EcoRII | CCWGG | 1 cut(s) | 249 |
| EcoT14I | CCWWGG | 1 cut(s) | 111 |
| ErhI | CCWWGG | 1 cut(s) | 111 |
| FaeI | CATG | 3 cut(s) | 274, 368, 452 |
| FaiI | YATR | 3 cut(s) | 272, 366, 450 |
| FaqI | GGGAC | 2 cut(s) | 113, 387 |
| FatI | CATG | 3 cut(s) | 270, 364, 448 |
| Fnu4HI | GCNGC | 1 cut(s) | 288 |
| FokI | GGATG | 2 cut(s) | 137, 212 |
| Fsp4HI | GCNGC | 1 cut(s) | 288 |
| FspBI | CTAG | 4 cut(s) | 117, 303, 381, 408 |
| FspI | TGCGCA | 1 cut(s) | 77 |
| GlaI | GCGC | 1 cut(s) | 77 |
| GluI | GCNGC | 1 cut(s) | 288 |
| HaeIII | GGCC | 2 cut(s) | 278, 422 |
| HapII | CCGG | 4 cut(s) | 157, 237, 343, 359 |
| HhaI | GCGC | 1 cut(s) | 78 |
| Hin1II | CATG | 3 cut(s) | 274, 368, 452 |
| Hin6I | GCGC | 1 cut(s) | 76 |
| HinP1I | GCGC | 1 cut(s) | 76 |
| HincII | GTYRAC | 1 cut(s) | 162 |
| HindII | GTYRAC | 1 cut(s) | 162 |
| HinfI | GANTC | 1 cut(s) | 217 |
| HpaII | CCGG | 4 cut(s) | 157, 237, 343, 359 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| Hpy188III | TCNNGA | 7 cut(s) | 13, 98, 173, 221, 337, 372, 389 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| HpyAV | CCTTC | 3 cut(s) | 10, 202, 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 4 cut(s) | 66, 211, 265, 274 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 271, 284 |
| HpySE526I | ACGT | 1 cut(s) | 426 |
| Hsp92II | CATG | 3 cut(s) | 274, 368, 452 |
| HspAI | GCGC | 1 cut(s) | 76 |
| Kzo9I | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| LmnI | GCTCC | 2 cut(s) | 4, 361 |
| Lsp1109I | GCAGC | 1 cut(s) | 299 |
| LweI | GCATC | 1 cut(s) | 87 |
| MaeI | CTAG | 4 cut(s) | 117, 303, 381, 408 |
| MaeII | ACGT | 1 cut(s) | 426 |
| MaeIII | GTNAC | 1 cut(s) | 403 |
| MalI | GATC | 7 cut(s) | 11, 43, 147, 295, 335, 341, 387 |
| MbiI | CCGCTC | 1 cut(s) | 7 |
| MboI | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| MboII | GAAGA | 2 cut(s) | 190, 268 |
| MflI | RGATCY | 1 cut(s) | 145 |
| MmeI | TCCRAC | 1 cut(s) | 442 |
| MnlI | CCTC | 7 cut(s) | 52, 82, 385, 391, 412, 430, 436 |
| MspI | CCGG | 4 cut(s) | 157, 237, 343, 359 |
| MspR9I | CCNGG | 3 cut(s) | 238, 251, 344 |
| MvaI | CCWGG | 1 cut(s) | 251 |
| MvnI | CGCG | 1 cut(s) | 390 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 271, 284 |
| NciI | CCSGG | 2 cut(s) | 238, 344 |
| NdeII | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| NheI | GCTAGC | 1 cut(s) | 380 |
| NlaIII | CATG | 3 cut(s) | 274, 368, 452 |
| NmeAIII | GCCGAG | 2 cut(s) | 52, 112 |
| NruI | TCGCGA | 1 cut(s) | 390 |
| NsbI | TGCGCA | 1 cut(s) | 77 |
| NspI | RCATGY | 2 cut(s) | 274, 368 |
| PfeI | GAWTC | 1 cut(s) | 217 |
| PfoI | TCCNGGA | 1 cut(s) | 342 |
| PkrI | GCNGC | 1 cut(s) | 289 |
| Ple19I | CGATCG | 2 cut(s) | 44, 388 |
| PmaCI | CACGTG | 1 cut(s) | 427 |
| PmlI | CACGTG | 1 cut(s) | 427 |
| Ppu21I | YACGTR | 1 cut(s) | 427 |
| Psp6I | CCWGG | 1 cut(s) | 249 |
| PspCI | CACGTG | 1 cut(s) | 427 |
| PspGI | CCWGG | 1 cut(s) | 249 |
| PspPI | GGNCC | 1 cut(s) | 421 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 339, 371 |
| PsuI | RGATCY | 1 cut(s) | 145 |
| PvuI | CGATCG | 2 cut(s) | 44, 388 |
| RgaI | GCGATCGC | 1 cut(s) | 388 |
| RruI | TCGCGA | 1 cut(s) | 390 |
| RsaI | GTAC | 2 cut(s) | 357, 447 |
| RsaNI | GTAC | 2 cut(s) | 356, 446 |
| SatI | GCNGC | 1 cut(s) | 288 |
| Sau3AI | GATC | 7 cut(s) | 9, 41, 145, 293, 333, 339, 385 |
| Sau96I | GGNCC | 1 cut(s) | 421 |
| ScrFI | CCNGG | 3 cut(s) | 238, 251, 344 |
| SetI | ASST | 5 cut(s) | 53, 108, 382, 429, 447 |
| SfaAI | GCGATCGC | 1 cut(s) | 388 |
| SfaNI | GCATC | 1 cut(s) | 87 |
| SgfI | GCGATCGC | 1 cut(s) | 388 |
| SsiI | CCGC | 4 cut(s) | 7, 131, 140, 395 |
| SspMI | CTAG | 4 cut(s) | 117, 303, 381, 408 |
| StyD4I | CCNGG | 3 cut(s) | 236, 249, 342 |
| StyI | CCWWGG | 1 cut(s) | 111 |
| TaiI | ACGT | 1 cut(s) | 429 |
| TaqI | TCGA | 5 cut(s) | 40, 44, 57, 215, 220 |
| TfiI | GAWTC | 1 cut(s) | 217 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XceI | RCATGY | 2 cut(s) | 274, 368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 118 |
| XspI | CTAG | 4 cut(s) | 117, 303, 381, 408 |