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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 76 |
| AccII | CGCG | 1 cut(s) | 334 |
| AciI | CCGC | 5 cut(s) | 329, 334, 368, 461, 471 |
| AclWI | GGATC | 1 cut(s) | 413 |
| AcsI | RAATTY | 1 cut(s) | 118 |
| AdeI | CACNNNGTG | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 13, 248, 368, 429 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 384, 416 |
| Alw21I | GWGCWC | 1 cut(s) | 359 |
| Alw26I | GTCTC | 1 cut(s) | 430 |
| AlwI | GGATC | 1 cut(s) | 413 |
| Ama87I | CYCGRG | 1 cut(s) | 7 |
| AoxI | GGCC | 3 cut(s) | 3, 267, 476 |
| ApeKI | GCWGC | 1 cut(s) | 385 |
| ApoI | RAATTY | 1 cut(s) | 118 |
| AspLEI | GCGC | 1 cut(s) | 334 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 7 cut(s) | 127, 166, 257, 351, 416, 433, 478 |
| AvaI | CYCGRG | 1 cut(s) | 7 |
| BauI | CACGAG | 1 cut(s) | 352 |
| Bbv12I | GWGCWC | 1 cut(s) | 359 |
| BbvI | GCAGC | 1 cut(s) | 397 |
| BccI | CCATC | 3 cut(s) | 32, 151, 308 |
| BcnI | CCSGG | 1 cut(s) | 243 |
| BcoDI | GTCTC | 1 cut(s) | 430 |
| BfaI | CTAG | 2 cut(s) | 363, 474 |
| BglII | AGATCT | 1 cut(s) | 294 |
| BisI | GCNGC | 2 cut(s) | 330, 386 |
| BlsI | GCNGC | 2 cut(s) | 331, 387 |
| Bme1390I | CCNGG | 1 cut(s) | 243 |
| BmeT110I | CYCGRG | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 4 cut(s) | 6, 18, 276, 288 |
| BmrFI | CCNGG | 1 cut(s) | 243 |
| BmsI | GCATC | 1 cut(s) | 105 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 239, 271 |
| BpuMI | CCSGG | 1 cut(s) | 243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 3 cut(s) | 270, 279, 444 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 13, 248, 368, 429 |
| Bse118I | RCCGGY | 1 cut(s) | 345 |
| Bse8I | GATNNNNATC | 1 cut(s) | 299 |
| BseDI | CCNNGG | 3 cut(s) | 270, 279, 444 |
| BseGI | GGATG | 2 cut(s) | 24, 377 |
| BseJI | GATNNNNATC | 1 cut(s) | 299 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 13, 248, 368, 429 |
| BseRI | GAGGAG | 2 cut(s) | 320, 334 |
| BseXI | GCAGC | 1 cut(s) | 397 |
| Bsh1236I | CGCG | 1 cut(s) | 334 |
| BshFI | GGCC | 3 cut(s) | 5, 269, 478 |
| BsiHKAI | GWGCWC | 1 cut(s) | 359 |
| BsiHKCI | CYCGRG | 1 cut(s) | 7 |
| BsiSI | CCGG | 5 cut(s) | 131, 242, 290, 346, 389 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 13, 248, 368, 429 |
| BsmAI | GTCTC | 1 cut(s) | 430 |
| BsmBI | CGTCTC | 1 cut(s) | 430 |
| BsnI | GGCC | 3 cut(s) | 5, 269, 478 |
| BsoBI | CYCGRG | 1 cut(s) | 7 |
| Bsp1286I | GDGCHC | 1 cut(s) | 359 |
| Bsp143I | GATC | 2 cut(s) | 294, 418 |
| BspACI | CCGC | 5 cut(s) | 329, 334, 368, 461, 471 |
| BspANI | GGCC | 3 cut(s) | 5, 269, 478 |
| BspFNI | CGCG | 1 cut(s) | 334 |
| BspLI | GGNNCC | 4 cut(s) | 6, 18, 276, 288 |
| BspPI | GGATC | 1 cut(s) | 413 |
| BsrFI | RCCGGY | 1 cut(s) | 345 |
| BssAI | RCCGGY | 1 cut(s) | 345 |
| BssECI | CCNNGG | 3 cut(s) | 270, 279, 444 |
| BssMI | GATC | 2 cut(s) | 294, 418 |
| BssNAI | GTATAC | 1 cut(s) | 77 |
| BssSI | CACGAG | 1 cut(s) | 352 |
| Bst1107I | GTATAC | 1 cut(s) | 77 |
| Bst2BI | CACGAG | 1 cut(s) | 352 |
| Bst4CI | ACNGT | 2 cut(s) | 283, 445 |
| Bst6I | CTCTTC | 1 cut(s) | 450 |
| BstDSI | CCRYGG | 2 cut(s) | 279, 444 |
| BstEII | GGTNACC | 1 cut(s) | 466 |
| BstF5I | GGATG | 2 cut(s) | 24, 377 |
| BstFNI | CGCG | 1 cut(s) | 334 |
| BstHHI | GCGC | 1 cut(s) | 334 |
| BstKTI | GATC | 2 cut(s) | 297, 421 |
| BstMAI | GTCTC | 1 cut(s) | 430 |
| BstMBI | GATC | 2 cut(s) | 294, 418 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 107, 346 |
| BstPI | GGTNACC | 1 cut(s) | 466 |
| BstSCI | CCNGG | 1 cut(s) | 241 |
| BstUI | CGCG | 1 cut(s) | 334 |
| BstV1I | GCAGC | 1 cut(s) | 397 |
| BstX2I | RGATCY | 1 cut(s) | 294 |
| BstYI | RGATCY | 1 cut(s) | 294 |
| BstZ17I | GTATAC | 1 cut(s) | 77 |
| BsuRI | GGCC | 3 cut(s) | 5, 269, 478 |
| BtgI | CCRYGG | 2 cut(s) | 279, 444 |
| BtgZI | GCGATG | 1 cut(s) | 82 |
| BtsCI | GGATG | 2 cut(s) | 24, 377 |
| CfoI | GCGC | 1 cut(s) | 334 |
| Cfr10I | RCCGGY | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CviJI | RGCY | 7 cut(s) | 5, 186, 205, 269, 289, 388, 478 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 186, 205, 269, 289, 388, 478 |
| DpnI | GATC | 2 cut(s) | 296, 420 |
| DpnII | GATC | 2 cut(s) | 294, 418 |
| DraIII | CACNNNGTG | 1 cut(s) | 365 |
| Eam1104I | CTCTTC | 1 cut(s) | 450 |
| EarI | CTCTTC | 1 cut(s) | 450 |
| EciI | GGCGGA | 1 cut(s) | 476 |
| Eco88I | CYCGRG | 1 cut(s) | 7 |
| Eco91I | GGTNACC | 1 cut(s) | 466 |
| EcoO65I | GGTNACC | 1 cut(s) | 466 |
| Esp3I | CGTCTC | 1 cut(s) | 430 |
| FaiI | YATR | 2 cut(s) | 77, 214 |
| FauI | CCCGC | 2 cut(s) | 327, 361 |
| FblI | GTMKAC | 1 cut(s) | 76 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 386 |
| FokI | GGATG | 2 cut(s) | 11, 384 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 386 |
| FspBI | CTAG | 2 cut(s) | 363, 474 |
| GlaI | GCGC | 1 cut(s) | 333 |
| GluI | GCNGC | 2 cut(s) | 330, 386 |
| HaeIII | GGCC | 3 cut(s) | 5, 269, 478 |
| HapII | CCGG | 5 cut(s) | 131, 242, 290, 346, 389 |
| HhaI | GCGC | 1 cut(s) | 334 |
| Hin6I | GCGC | 1 cut(s) | 332 |
| HinP1I | GCGC | 1 cut(s) | 332 |
| HpaII | CCGG | 5 cut(s) | 131, 242, 290, 346, 389 |
| HphI | GGTGA | 7 cut(s) | 127, 166, 257, 351, 416, 433, 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 77 |
| Hpy188I | TCNGA | 2 cut(s) | 210, 274 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| Hpy8I | GTNNAC | 1 cut(s) | 77 |
| HpyCH4III | ACNGT | 2 cut(s) | 283, 445 |
| HpyCH4V | TGCA | 1 cut(s) | 96 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 107, 346 |
| HspAI | GCGC | 1 cut(s) | 332 |
| Kzo9I | GATC | 2 cut(s) | 294, 418 |
| LmnI | GCTCC | 2 cut(s) | 286, 337 |
| LpnPI | CCDG | 5 cut(s) | 144, 255, 303, 359, 402 |
| Lsp1109I | GCAGC | 1 cut(s) | 397 |
| LweI | GCATC | 1 cut(s) | 105 |
| MaeI | CTAG | 2 cut(s) | 363, 474 |
| MaeIII | GTNAC | 1 cut(s) | 466 |
| MalI | GATC | 2 cut(s) | 296, 420 |
| MboI | GATC | 2 cut(s) | 294, 418 |
| MboII | GAAGA | 1 cut(s) | 467 |
| MflI | RGATCY | 1 cut(s) | 294 |
| MhlI | GDGCHC | 1 cut(s) | 359 |
| MluCI | AATT | 1 cut(s) | 118 |
| MslI | CAYNNNNRTG | 1 cut(s) | 443 |
| MspI | CCGG | 5 cut(s) | 131, 242, 290, 346, 389 |
| MspR9I | CCNGG | 1 cut(s) | 243 |
| MvnI | CGCG | 1 cut(s) | 334 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 107, 346 |
| NciI | CCSGG | 1 cut(s) | 243 |
| NdeII | GATC | 2 cut(s) | 294, 418 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 18, 276, 288 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| PkrI | GCNGC | 2 cut(s) | 331, 387 |
| PspEI | GGTNACC | 1 cut(s) | 466 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 18, 276, 288 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsuI | RGATCY | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 443 |
| SatI | GCNGC | 2 cut(s) | 330, 386 |
| Sau3AI | GATC | 2 cut(s) | 294, 418 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 1 cut(s) | 243 |
| SduI | GDGCHC | 1 cut(s) | 359 |
| SetI | ASST | 7 cut(s) | 18, 69, 117, 239, 326, 364, 468 |
| SfaNI | GCATC | 1 cut(s) | 105 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 443 |
| Sse9I | AATT | 1 cut(s) | 118 |
| SsiI | CCGC | 5 cut(s) | 329, 334, 368, 461, 471 |
| SspMI | CTAG | 2 cut(s) | 363, 474 |
| StyD4I | CCNGG | 1 cut(s) | 241 |
| TaaI | ACNGT | 2 cut(s) | 283, 445 |
| TaqI | TCGA | 2 cut(s) | 170, 303 |
| TasI | AATT | 1 cut(s) | 118 |
| TauI | GCSGC | 1 cut(s) | 332 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| TseI | GCWGC | 1 cut(s) | 385 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspDTI | ATGAA | 1 cut(s) | 468 |
| TspGWI | ACGGA | 1 cut(s) | 17 |
| XapI | RAATTY | 1 cut(s) | 118 |
| XmiI | GTMKAC | 1 cut(s) | 76 |
| XspI | CTAG | 2 cut(s) | 363, 474 |