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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 322 |
| AccII | CGCG | 1 cut(s) | 138 |
| AciI | CCGC | 2 cut(s) | 322, 440 |
| AclWI | GGATC | 4 cut(s) | 32, 176, 423, 471 |
| AcuI | CTGAAG | 2 cut(s) | 320, 513 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 56, 57, 191, 295, 358, 457 |
| AgsI | TTSAA | 2 cut(s) | 125, 307 |
| AjnI | CCWGG | 3 cut(s) | 189, 411, 477 |
| AluBI | AGCT | 4 cut(s) | 113, 266, 334, 430 |
| AluI | AGCT | 4 cut(s) | 113, 266, 334, 430 |
| Alw26I | GTCTC | 2 cut(s) | 95, 111 |
| AlwI | GGATC | 4 cut(s) | 32, 176, 423, 471 |
| Ama87I | CYCGRG | 1 cut(s) | 92 |
| AoxI | GGCC | 2 cut(s) | 375, 474 |
| ApaI | GGGCCC | 1 cut(s) | 478 |
| ApeKI | GCWGC | 1 cut(s) | 430 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 3 cut(s) | 349, 474, 475 |
| AsuC2I | CCSGG | 1 cut(s) | 162 |
| AvaI | CYCGRG | 1 cut(s) | 92 |
| AvaII | GGWCC | 1 cut(s) | 349 |
| AxyI | CCTNAGG | 1 cut(s) | 452 |
| BaeGI | GKGCMC | 1 cut(s) | 478 |
| BanII | GRGCYC | 2 cut(s) | 136, 478 |
| BauI | CACGAG | 1 cut(s) | 74 |
| BbvI | GCAGC | 1 cut(s) | 417 |
| BccI | CCATC | 1 cut(s) | 9 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 139, 156, 173, 190 |
| BciT130I | CCWGG | 3 cut(s) | 191, 413, 479 |
| BcnI | CCSGG | 1 cut(s) | 162 |
| BcoDI | GTCTC | 2 cut(s) | 95, 111 |
| BfmI | CTRYAG | 1 cut(s) | 503 |
| BglII | AGATCT | 1 cut(s) | 118 |
| BisI | GCNGC | 1 cut(s) | 431 |
| BlsI | GCNGC | 1 cut(s) | 432 |
| Bme1390I | CCNGG | 4 cut(s) | 162, 191, 413, 479 |
| Bme18I | GGWCC | 1 cut(s) | 349 |
| BmeT110I | CYCGRG | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 3 cut(s) | 349, 474, 475 |
| BmiI | GGNNCC | 1 cut(s) | 476 |
| BmrFI | CCNGG | 4 cut(s) | 162, 191, 413, 479 |
| BmrI | ACTGGG | 2 cut(s) | 46, 432 |
| BmuI | ACTGGG | 2 cut(s) | 46, 432 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| Bpu10I | CCTNAGC | 1 cut(s) | 207 |
| BpuEI | CTTGAG | 2 cut(s) | 93, 99 |
| BpuMI | CCSGG | 1 cut(s) | 162 |
| Bsa29I | ATCGAT | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 4 cut(s) | 161, 190, 378, 477 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 311, 341 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 56, 57, 191, 295, 358, 457 |
| Bse1I | ACTGG | 2 cut(s) | 52, 427 |
| Bse21I | CCTNAGG | 1 cut(s) | 452 |
| BseBI | CCWGG | 3 cut(s) | 191, 413, 479 |
| BseCI | ATCGAT | 1 cut(s) | 68 |
| BseDI | CCNNGG | 4 cut(s) | 161, 190, 378, 477 |
| BseGI | GGATG | 1 cut(s) | 451 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 56, 57, 191, 295, 358, 457 |
| BseMII | CTCAG | 2 cut(s) | 221, 443 |
| BseNI | ACTGG | 2 cut(s) | 52, 427 |
| BseRI | GAGGAG | 2 cut(s) | 32, 371 |
| BseSI | GKGCMC | 1 cut(s) | 478 |
| BseXI | GCAGC | 1 cut(s) | 417 |
| BsgI | GTGCAG | 1 cut(s) | 363 |
| Bsh1236I | CGCG | 1 cut(s) | 138 |
| BshFI | GGCC | 2 cut(s) | 377, 476 |
| BshVI | ATCGAT | 1 cut(s) | 68 |
| BsiHKCI | CYCGRG | 1 cut(s) | 92 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 56, 57, 191, 295, 358, 457 |
| BsmAI | GTCTC | 2 cut(s) | 95, 111 |
| BsnI | GGCC | 2 cut(s) | 377, 476 |
| Bso31I | GGTCTC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 92 |
| Bsp120I | GGGCCC | 1 cut(s) | 474 |
| Bsp1286I | GDGCHC | 2 cut(s) | 136, 478 |
| Bsp143I | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| Bsp68I | TCGCGA | 1 cut(s) | 138 |
| BspACI | CCGC | 2 cut(s) | 322, 440 |
| BspANI | GGCC | 2 cut(s) | 377, 476 |
| BspCNI | CTCAG | 2 cut(s) | 220, 444 |
| BspDI | ATCGAT | 1 cut(s) | 68 |
| BspFNI | CGCG | 1 cut(s) | 138 |
| BspLI | GGNNCC | 1 cut(s) | 476 |
| BspMAI | CTGCAG | 1 cut(s) | 507 |
| BspPI | GGATC | 4 cut(s) | 32, 176, 423, 471 |
| BspQI | GCTCTTC | 1 cut(s) | 489 |
| BspTNI | GGTCTC | 1 cut(s) | 95 |
| BsrBI | CCGCTC | 1 cut(s) | 322 |
| BsrI | ACTGG | 2 cut(s) | 52, 427 |
| BssECI | CCNNGG | 4 cut(s) | 161, 190, 378, 477 |
| BssMI | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| BssSI | CACGAG | 1 cut(s) | 74 |
| BssT1I | CCWWGG | 1 cut(s) | 378 |
| Bst2BI | CACGAG | 1 cut(s) | 74 |
| Bst2UI | CCWGG | 3 cut(s) | 191, 413, 479 |
| Bst6I | CTCTTC | 1 cut(s) | 489 |
| BstC8I | GCNNGC | 2 cut(s) | 136, 324 |
| BstDEI | CTNAG | 2 cut(s) | 207, 452 |
| BstF5I | GGATG | 1 cut(s) | 451 |
| BstFNI | CGCG | 1 cut(s) | 138 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 5 cut(s) | 27, 121, 184, 418, 466 |
| BstMAI | GTCTC | 2 cut(s) | 95, 111 |
| BstMBI | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 383 |
| BstNI | CCWGG | 3 cut(s) | 191, 413, 479 |
| BstSCI | CCNGG | 4 cut(s) | 160, 189, 411, 477 |
| BstSFI | CTRYAG | 1 cut(s) | 503 |
| BstSLI | GKGCMC | 1 cut(s) | 478 |
| BstUI | CGCG | 1 cut(s) | 138 |
| BstV1I | GCAGC | 1 cut(s) | 417 |
| BstX2I | RGATCY | 3 cut(s) | 118, 181, 415 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 251 |
| BstYI | RGATCY | 3 cut(s) | 118, 181, 415 |
| Bsu15I | ATCGAT | 1 cut(s) | 68 |
| Bsu36I | CCTNAGG | 1 cut(s) | 452 |
| BsuRI | GGCC | 2 cut(s) | 377, 476 |
| BsuTUI | ATCGAT | 1 cut(s) | 68 |
| BtgZI | GCGATG | 1 cut(s) | 181 |
| BtsCI | GGATG | 1 cut(s) | 451 |
| BtsI | GCAGTG | 1 cut(s) | 351 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| BtuMI | TCGCGA | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 2 cut(s) | 136, 324 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 3 cut(s) | 349, 474, 475 |
| ClaI | ATCGAT | 1 cut(s) | 68 |
| CseI | GACGC | 1 cut(s) | 488 |
| CviAII | CATG | 2 cut(s) | 235, 245 |
| DdeI | CTNAG | 2 cut(s) | 207, 452 |
| DpnI | GATC | 5 cut(s) | 26, 120, 183, 417, 465 |
| DpnII | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| Eam1104I | CTCTTC | 1 cut(s) | 489 |
| EarI | CTCTTC | 1 cut(s) | 489 |
| EciI | GGCGGA | 1 cut(s) | 455 |
| Eco130I | CCWWGG | 1 cut(s) | 378 |
| Eco24I | GRGCYC | 2 cut(s) | 136, 478 |
| Eco31I | GGTCTC | 1 cut(s) | 95 |
| Eco47I | GGWCC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 2 cut(s) | 320, 513 |
| Eco81I | CCTNAGG | 1 cut(s) | 452 |
| Eco88I | CYCGRG | 1 cut(s) | 92 |
| EcoO109I | RGGNCCY | 1 cut(s) | 474 |
| EcoRII | CCWGG | 3 cut(s) | 189, 411, 477 |
| EcoT14I | CCWWGG | 1 cut(s) | 378 |
| EcoT38I | GRGCYC | 2 cut(s) | 136, 478 |
| ErhI | CCWWGG | 1 cut(s) | 378 |
| FaeI | CATG | 2 cut(s) | 238, 248 |
| FaiI | YATR | 2 cut(s) | 236, 246 |
| FatI | CATG | 2 cut(s) | 234, 244 |
| FauI | CCCGC | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 1 cut(s) | 431 |
| FokI | GGATG | 1 cut(s) | 458 |
| FriOI | GRGCYC | 2 cut(s) | 136, 478 |
| Fsp4HI | GCNGC | 1 cut(s) | 431 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 431 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 2 cut(s) | 377, 476 |
| HapII | CCGG | 1 cut(s) | 161 |
| HgaI | GACGC | 1 cut(s) | 488 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1II | CATG | 2 cut(s) | 238, 248 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HpaII | CCGG | 1 cut(s) | 161 |
| Hpy166II | GTNNAC | 2 cut(s) | 232, 349 |
| Hpy188I | TCNGA | 2 cut(s) | 10, 339 |
| Hpy188III | TCNNGA | 9 cut(s) | 116, 137, 148, 200, 209, 278, 313, 371, 451 |
| Hpy8I | GTNNAC | 2 cut(s) | 232, 349 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyCH4V | TGCA | 4 cut(s) | 295, 344, 433, 505 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 383 |
| HpyF3I | CTNAG | 2 cut(s) | 207, 452 |
| Hsp92II | CATG | 2 cut(s) | 238, 248 |
| HspAI | GCGC | 1 cut(s) | 4 |
| Kzo9I | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| LguI | GCTCTTC | 1 cut(s) | 489 |
| LmnI | GCTCC | 2 cut(s) | 319, 397 |
| Lsp1109I | GCAGC | 1 cut(s) | 417 |
| MalI | GATC | 5 cut(s) | 26, 120, 183, 417, 465 |
| MbiI | CCGCTC | 1 cut(s) | 322 |
| MboI | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| MboII | GAAGA | 5 cut(s) | 41, 44, 113, 191, 506 |
| MflI | RGATCY | 3 cut(s) | 118, 181, 415 |
| MhlI | GDGCHC | 2 cut(s) | 136, 478 |
| MluCI | AATT | 1 cut(s) | 238 |
| MseI | TTAA | 1 cut(s) | 273 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 4 cut(s) | 162, 191, 413, 479 |
| MvaI | CCWGG | 3 cut(s) | 191, 413, 479 |
| MvnI | CGCG | 1 cut(s) | 138 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 383 |
| NciI | CCSGG | 1 cut(s) | 162 |
| NdeII | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| NlaIII | CATG | 2 cut(s) | 238, 248 |
| NlaIV | GGNNCC | 1 cut(s) | 476 |
| NruI | TCGCGA | 1 cut(s) | 138 |
| PciSI | GCTCTTC | 1 cut(s) | 489 |
| PkrI | GCNGC | 1 cut(s) | 432 |
| Psp6I | CCWGG | 3 cut(s) | 189, 411, 477 |
| PspGI | CCWGG | 3 cut(s) | 189, 411, 477 |
| PspN4I | GGNNCC | 1 cut(s) | 476 |
| PspOMI | GGGCCC | 1 cut(s) | 474 |
| PspPI | GGNCC | 3 cut(s) | 349, 474, 475 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 224, 256 |
| PstI | CTGCAG | 1 cut(s) | 507 |
| PsuI | RGATCY | 3 cut(s) | 118, 181, 415 |
| RruI | TCGCGA | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| SatI | GCNGC | 1 cut(s) | 431 |
| Sau3AI | GATC | 5 cut(s) | 24, 118, 181, 415, 463 |
| Sau96I | GGNCC | 3 cut(s) | 349, 474, 475 |
| ScrFI | CCNGG | 4 cut(s) | 162, 191, 413, 479 |
| SduI | GDGCHC | 2 cut(s) | 136, 478 |
| SfcI | CTRYAG | 1 cut(s) | 503 |
| SinI | GGWCC | 1 cut(s) | 349 |
| SmlI | CTYRAG | 2 cut(s) | 108, 114 |
| SmoI | CTYRAG | 2 cut(s) | 108, 114 |
| Sse9I | AATT | 1 cut(s) | 238 |
| SsiI | CCGC | 2 cut(s) | 322, 440 |
| StyD4I | CCNGG | 4 cut(s) | 160, 189, 411, 477 |
| StyI | CCWWGG | 1 cut(s) | 378 |
| TaqI | TCGA | 2 cut(s) | 27, 68 |
| TasI | AATT | 1 cut(s) | 238 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseI | GCWGC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 2 cut(s) | 167, 251 |
| TspRI | CASTG | 1 cut(s) | 351 |
| VpaK11BI | GGWCC | 1 cut(s) | 349 |