Rmu_ssc0000392.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000392.1
OG0000075
Physical Location & Seq
Reverse (-)
40143 .. 43468
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000392.1_g000019.1.cds

Sequence Viewer

Length: 2604 bp
atggcgcgtgagaaccgcagtggcgctaggcgaaagggttcctctcatggagggggaggaacctcctgtggtggtgtcggtgcgtctcgtggcgggggagaaggtgcttctcgcaataacggtggaggcggttcccgcggtggcgtctcggacgatcctcggggagttggcgagggcgattccagagggggtgttccgggtagggttgagcgacccgtggtgcctgatgtagatgatgtcaagatcttggagattccgcgtacgccccgtgggcgattgcgtattggcgatacacctattgatcagctgggcctgagcttttacgagtatcaactcaggtgtgggttgatgttcccgttacccgaggaattacaatatctgctgtcttgcttgaatatattggtagggcagctattgcccaatgagttgaggcaaataatgggagtattgctgcactacttgactaaaggtggagatagtgggtgcgcgaatttcagggcgtgcggccgagccgttatcaaagacttgctgtcaaacatttatgcgcgttgggggggggtgcttagtaggctgctggtggcagaatcaggatatggtgcaccgggccccgagccggaggtgaatttgaccacgctggagcggaagcgtgtggcgagggtgatgggtgctttcccgaaggggttgagggggttctatccggatatgcagaacgaagctcttagcaagagcgacgccccatatgttgatgttgaccttgatactattattcaagggttgctacgagaatcgcaaacggcgaggcgagtggacgttgacatgccagatatggtgcgtgtgacagatcatcgggtaagtatgtcgctgctcgatgagatgtatttgctgttgcccgatgccattctggagtatctcaatcagtgggctgagaaggaggctagagccgaggggcacgaggttcacggtgctcacgagccaactagagatgcccgggagcagcccatgcaagctggcgaggtctcggcaggaggggaggatcttggtgacctggctcgggcctcggagcctactgtggaggtgaagatctccgtcgaggagctgatggaagaggtggagctgcgccagagcgataccagtgcttgtgctcgcctggtgcaagacacggttctggggcagctggaaaccgtttttggtgatgaaattggcgattctgtctcgcgggaagtcatcaccgcggatagtggagaggcggaggtgaccagccaagccattggcgagacaggtctgacagtcgaggatggagagggggatggagtccgagtgtcggagacctgtacccgtacgggtggggtcgggtcaaggaagaggacggcctcgcagcttcatctcggtagtcccccagttggcgtcgctatcgacactcatggtagtaagaggtctcgggttgataatgtgtcgcgctcgagatctacgagtgggggctcgcggggttctcgcaatgaggttgtcgggggtctcgcgcatatattgggcgagattgggattactgatggtgccatcctccatatggttgccgacctttggaactgtcatcgctaccgcagtcgcgtgagtgcagaagatccacgcttagggtatcgggaggctcaggagaggccgatgagggctgtgaacatgaattaccatgcctcgggcgagttggtggctcattttgatcgggagatagcccggctacagggggagctgaatgctgagagggagtgggcccttgggctacagagtgcattagaccaaggtcaggtggaatgcgaggatatgagacgagcaatcgatgaagggatcgctagaagaatggaattagagcgagcactcgcggtggaggaggcctgccgccaagaggagaaggatgctatcactccgttgagggaggcaaacctggatcttacaaggaagttgcagcgggtccaagaaggcgatgtggagttggagctttgggcggccgccttggagagtttggctccttatcccaatcaggtggtggatttggagggccaggttgggaatctgcaaagggaggttgaccttctatgggatgtcgagcttgaagcaggcgagagggaggcagagatggagcgactcaggaaggagttagctgagcaacagactcggtcgagtagctttgccaaagaatgcattcgcttgcccgctgctgccgagacacatcgggacaagctccgcaaggccagtcgggatagggcggacaaggtggtggatctctatctccggtcaagccatttccaggagaagatgaacaaggctttctcagatggggtcttgcactcgattaaagacggtatcgctgttgggtggattgaccaagagaagacggtgagagacatgcaggccaagaaagcagcgagatcgcaggctagtgcggcgagcggtgggctgagttctgggttagtgatccgggagccggttgtaccagagcgtgtattgggacaagctggtgatctcaatgcggagggtgctattggtgagcaggggcccttgcggatatcgggggcgaggtacaaggcgagagtactggagagcgagacggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

867

Amino Acids

94.39

Weight (kDa)

5.16

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000075)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0348161 RchiOBHm_Chr1g0367481 RchiOBHm_Chr1g0368431 RchiOBHm_Chr2g0116021 RchiOBHm_Chr2g0133961 RchiOBHm_Chr4g0390151 RchiOBHm_Chr4g0402771 RchiOBHm_Chr4g0419581 RchiOBHm_Chr5g0054351 RchiOBHm_Chr6g0278891 RchiOBHm_Chr7g0201941 RchiOBHm_Chr7g0242761
rosa_laevigata RLG00000002487 RLG00000002488 RLG00000003412 RLG00000003415 RLG00000013607 RLG00000018981 RLG00000018982 RLG00000034520 RLG00000034521
rosa_multiflora Rmu_co8024510.1_g000001 Rmu_co8121892.1_g000001 Rmu_co8133046.1_g000001 Rmu_co8158032.1_g000001 Rmu_co8181114.1_g000001 Rmu_co8202532.1_g000001 Rmu_co8331471.1_g000001 Rmu_co8340209.1_g000001 Rmu_co8359899.1_g000001 Rmu_co8433657.1_g000002 Rmu_co8436419.1_g000002 Rmu_co8458211.1_g000002 Rmu_co8458731.1_g000002 Rmu_co8466361.1_g000001 Rmu_co8474565.1_g000001 Rmu_co8474565.1_g000002 Rmu_co8482201.1_g000001 Rmu_co8491967.1_g000003 Rmu_co8498095.1_g000001 Rmu_co8513217.1_g000002 Rmu_co8518257.1_g000001 Rmu_co8520425.1_g000003 Rmu_co8521283.1_g000003 Rmu_sc0000029.1_g000029 Rmu_sc0000082.1_g000019 Rmu_sc0000147.1_g000107 Rmu_sc0000212.1_g000005 Rmu_sc0000247.1_g000030 Rmu_sc0000367.1_g000175 Rmu_sc0000433.1_g000035 Rmu_sc0000538.1_g000038 Rmu_sc0000550.1_g000010 Rmu_sc0000635.1_g000007 Rmu_sc0000650.1_g000012 Rmu_sc0000652.1_g000009 Rmu_sc0000652.1_g000010 Rmu_sc0000742.1_g000010 Rmu_sc0000750.1_g000007 Rmu_sc0000750.1_g000008 Rmu_sc0000772.1_g000018 Rmu_sc0000830.1_g000026 Rmu_sc0000859.1_g000006 Rmu_sc0001190.1_g000039 Rmu_sc0001190.1_g000050 Rmu_sc0001190.1_g000051 Rmu_sc0001205.1_g000008 Rmu_sc0001294.1_g000025 Rmu_sc0001366.1_g000010 Rmu_sc0001373.1_g000036 Rmu_sc0001423.1_g000046 Rmu_sc0001788.1_g000014 Rmu_sc0001801.1_g000016 Rmu_sc0001849.1_g000032 Rmu_sc0001967.1_g000002 Rmu_sc0002082.1_g000066 Rmu_sc0002250.1_g000013 Rmu_sc0002322.1_g000039 Rmu_sc0002371.1_g000002 Rmu_sc0002522.1_g000036 Rmu_sc0002532.1_g000048 Rmu_sc0002669.1_g000065 Rmu_sc0002669.1_g000067 Rmu_sc0002669.1_g000069 Rmu_sc0002834.1_g000007 Rmu_sc0003226.1_g000070 Rmu_sc0003260.1_g000018 Rmu_sc0003313.1_g000007 Rmu_sc0003441.1_g000018 Rmu_sc0003490.1_g000008 Rmu_sc0003705.1_g000011 Rmu_sc0003737.1_g000013 Rmu_sc0003748.1_g000020 Rmu_sc0003910.1_g000015 Rmu_sc0003919.1_g000029 Rmu_sc0003919.1_g000031 Rmu_sc0004037.1_g000012 Rmu_sc0004099.1_g000003 Rmu_sc0004122.1_g000013 Rmu_sc0004402.1_g000013 Rmu_sc0004646.1_g000035 Rmu_sc0004688.1_g000024 Rmu_sc0004823.1_g000046 Rmu_sc0004869.1_g000003 Rmu_sc0004869.1_g000004 Rmu_sc0005132.1_g000035 Rmu_sc0005190.1_g000001 Rmu_sc0005229.1_g000005 Rmu_sc0005229.1_g000023 Rmu_sc0005363.1_g000034 Rmu_sc0005537.1_g000006 Rmu_sc0005657.1_g000024 Rmu_sc0005856.1_g000011 Rmu_sc0005856.1_g000012 Rmu_sc0005953.1_g000007 Rmu_sc0005971.1_g000015 Rmu_sc0006287.1_g000004 Rmu_sc0006315.1_g000014 Rmu_sc0006518.1_g000003 Rmu_sc0006695.1_g000066 Rmu_sc0006803.1_g000056 Rmu_sc0006822.1_g000002 Rmu_sc0006926.1_g000011 Rmu_sc0007560.1_g000008 Rmu_sc0007582.1_g000005 Rmu_sc0007618.1_g000025 Rmu_sc0007647.1_g000004 Rmu_sc0007656.1_g000013 Rmu_sc0007877.1_g000011 Rmu_sc0008528.1_g000005 Rmu_sc0008528.1_g000006 Rmu_sc0008749.1_g000004 Rmu_sc0008989.1_g000003 Rmu_sc0009120.1_g000010 Rmu_sc0009663.1_g000009 Rmu_sc0010035.1_g000001 Rmu_sc0010160.1_g000010 Rmu_sc0010160.1_g000011 Rmu_sc0010953.1_g000004 Rmu_sc0011008.1_g000006 Rmu_sc0011452.1_g000009 Rmu_sc0012746.1_g000014 Rmu_sc0013612.1_g000017 Rmu_sc0013951.1_g000011 Rmu_sc0014162.1_g000009 Rmu_sc0014162.1_g000010 Rmu_sc0016149.1_g000003 Rmu_sc0016418.1_g000008 Rmu_sc0016418.1_g000009 Rmu_sc0017353.1_g000001 Rmu_sc0017353.1_g000002 Rmu_sc0018537.1_g000012 Rmu_sc0019739.1_g000003 Rmu_sc0019739.1_g000004 Rmu_sc0020186.1_g000016 Rmu_sc0021611.1_g000001 Rmu_sc0022755.1_g000003 Rmu_sc0024226.1_g000006 Rmu_sc0025769.1_g000004 Rmu_sc0025769.1_g000005 Rmu_sc0030235.1_g000004 Rmu_sc0035508.1_g000007 Rmu_sc0036413.1_g000001 Rmu_sc0037646.1_g000001 Rmu_sc0037646.1_g000002 Rmu_sc0037647.1_g000001 Rmu_sc0037647.1_g000002 Rmu_sc0037678.1_g000001 Rmu_ssc0000072.1_g000010 Rmu_ssc0000116.1_g000041 Rmu_ssc0000127.1_g000018 Rmu_ssc0000175.1_g000018 Rmu_ssc0000175.1_g000019 Rmu_ssc0000175.1_g000020 Rmu_ssc0000197.1_g000037 Rmu_ssc0000213.1_g000051 Rmu_ssc0000359.1_g000008 Rmu_ssc0000392.1_g000019
rosa_roxburghii Rroxscaffold_154G00447930 Rroxscaffold_1G00000570 Rroxscaffold_1G00009890 Rroxscaffold_1G00012210 Rroxscaffold_1G00012960 Rroxscaffold_1G00014650 Rroxscaffold_1G00014660 Rroxscaffold_1G00014670 Rroxscaffold_1G00022880 Rroxscaffold_1G00024640 Rroxscaffold_1G00024650 Rroxscaffold_1G00025670 Rroxscaffold_1G00025680 Rroxscaffold_1G00025690 Rroxscaffold_1G00030660 Rroxscaffold_1G00031340 Rroxscaffold_1G00031350 Rroxscaffold_2G00103100 Rroxscaffold_2G00103120 Rroxscaffold_2G00107390 Rroxscaffold_2G00108940 Rroxscaffold_2G00110610 Rroxscaffold_2G00110620 Rroxscaffold_2G00110710 Rroxscaffold_2G00110720 Rroxscaffold_2G00110730 Rroxscaffold_2G00111170 Rroxscaffold_2G00111510 Rroxscaffold_2G00114750 Rroxscaffold_2G00114760 Rroxscaffold_2G00114770 Rroxscaffold_2G00116270 Rroxscaffold_2G00121090 Rroxscaffold_2G00129350 Rroxscaffold_2G00130410 Rroxscaffold_2G00155930 Rroxscaffold_3G00218120 Rroxscaffold_3G00218330 Rroxscaffold_3G00218340 Rroxscaffold_3G00227530 Rroxscaffold_3G00233140 Rroxscaffold_3G00236800 Rroxscaffold_3G00242370 Rroxscaffold_3G00242380 Rroxscaffold_3G00242410 Rroxscaffold_3G00248720 Rroxscaffold_3G00248730 Rroxscaffold_3G00248770 Rroxscaffold_3G00258550 Rroxscaffold_3G00258560 Rroxscaffold_4G00287000 Rroxscaffold_4G00289070 Rroxscaffold_4G00289080 Rroxscaffold_4G00289100 Rroxscaffold_4G00295600 Rroxscaffold_4G00298090 Rroxscaffold_4G00308330 Rroxscaffold_4G00310570 Rroxscaffold_4G00310580 Rroxscaffold_4G00310620 Rroxscaffold_4G00315750 Rroxscaffold_4G00319620 Rroxscaffold_4G00319630 Rroxscaffold_4G00328870 Rroxscaffold_4G00328880 Rroxscaffold_4G00332120 Rroxscaffold_4G00332310 Rroxscaffold_5G00332660 Rroxscaffold_5G00332710 Rroxscaffold_5G00332970 Rroxscaffold_5G00344920 Rroxscaffold_5G00345540 Rroxscaffold_5G00346760 Rroxscaffold_5G00346770 Rroxscaffold_5G00347420 Rroxscaffold_5G00350360 Rroxscaffold_5G00350370 Rroxscaffold_5G00354490 Rroxscaffold_5G00370760 Rroxscaffold_5G00370770 Rroxscaffold_5G00374010 Rroxscaffold_5G00374020 Rroxscaffold_5G00374490 Rroxscaffold_5G00374510 Rroxscaffold_5G00387640 Rroxscaffold_5G00387650 Rroxscaffold_6G00387870 Rroxscaffold_6G00388560 Rroxscaffold_6G00388570 Rroxscaffold_6G00388670 Rroxscaffold_6G00388680 Rroxscaffold_6G00391960 Rroxscaffold_6G00393010 Rroxscaffold_6G00395010 Rroxscaffold_6G00395020 Rroxscaffold_6G00397990 Rroxscaffold_6G00401460 Rroxscaffold_6G00407850 Rroxscaffold_6G00423090 Rroxscaffold_6G00423100 Rroxscaffold_6G00423110 Rroxscaffold_7G00165960 Rroxscaffold_7G00165970 Rroxscaffold_7G00176270 Rroxscaffold_7G00176280 Rroxscaffold_7G00176600 Rroxscaffold_7G00176610 Rroxscaffold_7G00176620 Rroxscaffold_7G00176660 Rroxscaffold_7G00195710
rosa_rugosa Rorug03G0209000 Rorug05G0468000 Rorug05G0468000
rosa_samantha Rh3AG250900 Rh3AG257700 Rh3BG294700 Rh3CG284700 Rh3CG284800 Rh3DG280200 Rh3DG280300 Rh3DG280500 Rh3DG287600 Rh3DG287700 Rh4BG408500 Rh4DG402700 Rh6CG194400 Rh6CG194600 Rh6DG186400 Rh6DG186500 Rh7AG218100 Rh7AG278800 Rh7BG224200 Rh7CG231300 Rh7CG231400 Rh7DG225400
rosa_wichuraiana Rw3G022640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 220, 1550
AccBSI CCGCTC 2 cut(s) 640, 2439
AccIII TCCGGA 1 cut(s) 697
AclWI GGATC 7 cut(s) 149, 1041, 1613, 1844, 1944, 2277, 2458
AcoI YGGCCR 2 cut(s) 505, 1995
AcsI RAATTY 2 cut(s) 490, 622
AcyI GRCGYC 3 cut(s) 144, 732, 1404
AfaI GTAC 6 cut(s) 262, 1333, 1339, 2481, 2570, 2583
AgsI TTSAA 3 cut(s) 394, 770, 2102
AhdI GACNNNNNGTC 1 cut(s) 529
AjnI CCWGG 5 cut(s) 1044, 1146, 1932, 2049, 2295
AjuI GAANNNNNNNTTGG 2 cut(s) 1170, 1202
Alw21I GWGCWC 4 cut(s) 601, 967, 1144, 1867
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 7 cut(s) 149, 1041, 1613, 1844, 1944, 2277, 2458
Ama87I CYCGRG 8 cut(s) 159, 362, 608, 987, 1050, 1437, 1459, 1687
Aor13HI TCCGGA 1 cut(s) 697
ApaI GGGCCC 3 cut(s) 608, 1765, 2547
ApaLI GTGCAC 1 cut(s) 597
ApoI RAATTY 2 cut(s) 490, 622
Asp700I GAANNNNTTC 2 cut(s) 37, 2190
AspLEI GCGC 7 cut(s) 7, 26, 488, 547, 1119, 1458, 1519
AsuC2I CCSGG 6 cut(s) 198, 603, 988, 989, 1726, 2468
AvaI CYCGRG 8 cut(s) 159, 362, 608, 987, 1050, 1437, 1459, 1687
AvaII GGWCC 1 cut(s) 1960
BaeGI GKGCMC 5 cut(s) 601, 608, 951, 1765, 2547
BanI GGYRCC 2 cut(s) 220, 1550
BanII GRGCYC 4 cut(s) 608, 1481, 1765, 2547
BauI CACGAG 3 cut(s) 87, 950, 968
BbsI GAAGAC 1 cut(s) 2387
Bbv12I GWGCWC 4 cut(s) 601, 967, 1144, 1867
BccI CCATC 8 cut(s) 655, 1093, 1289, 1301, 1541, 1562, 2119, 2318
BceAI ACGGC 3 cut(s) 497, 810, 1383
BcgI CGANNNNNNTGC 6 cut(s) 1115, 1149, 2144, 2178, 2400, 2434
BciT130I CCWGG 5 cut(s) 1046, 1148, 1934, 2051, 2297
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 6 cut(s) 198, 603, 988, 989, 1726, 2468
BfaI CTAG 5 cut(s) 27, 936, 978, 1842, 2427
BfmI CTRYAG 2 cut(s) 1730, 1772
BfoI RGCGCY 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 271
BglII AGATCT 3 cut(s) 243, 1080, 1463
BlpI GCTNAGC 1 cut(s) 2151
BmcAI AGTACT 1 cut(s) 2583
Bme18I GGWCC 1 cut(s) 1960
BmeRI GACNNNNNGTC 1 cut(s) 529
BmeT110I CYCGRG 8 cut(s) 159, 362, 608, 987, 1050, 1437, 1459, 1687
BmrI ACTGGG 1 cut(s) 1391
BmsI GCATC 3 cut(s) 883, 973, 1894
BmuI ACTGGG 1 cut(s) 1391
BoxI GACNNNNGTC 1 cut(s) 1791
BpiI GAAGAC 1 cut(s) 2387
BplI GAGNNNNNCTC 2 cut(s) 1999, 2031
BpmI CTGGAG 2 cut(s) 656, 923
Bpu10I CCTNAGC 3 cut(s) 314, 1627, 1644
Bpu1102I GCTNAGC 1 cut(s) 2151
BpuMI CCSGG 6 cut(s) 198, 603, 988, 989, 1726, 2468
Bsa29I ATCGAT 1 cut(s) 1827
BsaBI GATNNNNATC 1 cut(s) 2274
BsaHI GRCGYC 3 cut(s) 144, 732, 1404
BsaI GGTCTC 4 cut(s) 1021, 1319, 1440, 1517
BsaWI WCCGGW 2 cut(s) 697, 2280
BsaXI ACNNNNNCTCC 2 cut(s) 1302, 1332
Bse118I RCCGGY 1 cut(s) 2473
Bse1I ACTGG 4 cut(s) 1131, 1397, 2241, 2589
Bse3DI GCAATG 1 cut(s) 1501
Bse8I GATNNNNATC 1 cut(s) 2274
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 5 cut(s) 1046, 1148, 1934, 2051, 2297
BseCI ATCGAT 1 cut(s) 1827
BseGI GGATG 5 cut(s) 1300, 1312, 1554, 1909, 2095
BseJI GATNNNNATC 1 cut(s) 2274
BseMI GCAATG 1 cut(s) 1501
BseMII CTCAG 9 cut(s) 305, 349, 915, 1658, 1740, 2142, 2149, 2334, 2438
BseNI ACTGG 4 cut(s) 1131, 1397, 2241, 2589
BseRI GAGGAG 3 cut(s) 1106, 1892, 1910
BseSI GKGCMC 5 cut(s) 601, 608, 951, 1765, 2547
BseX3I CGGCCG 2 cut(s) 505, 1995
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 2 cut(s) 437, 1632
Bsh1285I CGRYCG 3 cut(s) 508, 1998, 2168
BshNI GGYRCC 2 cut(s) 220, 1550
BshVI ATCGAT 1 cut(s) 1827
BsiEI CGRYCG 3 cut(s) 508, 1998, 2168
BsiHKAI GWGCWC 4 cut(s) 601, 967, 1144, 1867
BsiHKCI CYCGRG 8 cut(s) 159, 362, 608, 987, 1050, 1437, 1459, 1687
BsiSI CCGG 9 cut(s) 197, 602, 614, 698, 988, 1726, 2281, 2467, 2474
BsiWI CGTACG 2 cut(s) 260, 1337
BslFI GGGAC 3 cut(s) 1377, 2237, 2511
BsmBI CGTCTC 4 cut(s) 90, 151, 1810, 2588
BsmFI GGGAC 3 cut(s) 1377, 2237, 2511
BsmI GAATGC 4 cut(s) 1750, 1808, 2190, 2192
Bso31I GGTCTC 4 cut(s) 1021, 1319, 1440, 1517
BsoBI CYCGRG 8 cut(s) 159, 362, 608, 987, 1050, 1437, 1459, 1687
Bsp120I GGGCCC 3 cut(s) 604, 1761, 2543
Bsp1286I GDGCHC 9 cut(s) 601, 608, 951, 967, 1144, 1481, 1765, 1867, 2547
Bsp13I TCCGGA 1 cut(s) 697
Bsp1720I GCTNAGC 1 cut(s) 2151
BspCNI CTCAG 9 cut(s) 306, 348, 916, 1657, 1741, 2143, 2148, 2333, 2439
BspDI ATCGAT 1 cut(s) 1827
BspEI TCCGGA 1 cut(s) 697
BspPI GGATC 7 cut(s) 149, 1041, 1613, 1844, 1944, 2277, 2458
BspT107I GGYRCC 2 cut(s) 220, 1550
BspTNI GGTCTC 4 cut(s) 1021, 1319, 1440, 1517
BsrBI CCGCTC 2 cut(s) 640, 2439
BsrDI GCAATG 1 cut(s) 1501
BsrFI RCCGGY 1 cut(s) 2473
BsrI ACTGG 4 cut(s) 1131, 1397, 2241, 2589
BssAI RCCGGY 1 cut(s) 2473
BssNI GRCGYC 3 cut(s) 144, 732, 1404
BssSI CACGAG 3 cut(s) 87, 950, 968
BssT1I CCWWGG 3 cut(s) 1765, 1789, 2001
Bst2BI CACGAG 3 cut(s) 87, 950, 968
Bst2UI CCWGG 5 cut(s) 1046, 1148, 1934, 2051, 2297
Bst4CI ACNGT 9 cut(s) 122, 962, 1069, 1162, 1183, 1288, 1586, 2351, 2386
Bst6I CTCTTC 2 cut(s) 1098, 1355
BstACI GRCGYC 3 cut(s) 144, 732, 1404
BstAPI GCANNNNNTGC 2 cut(s) 415, 1000
BstDSI CCRYGG 4 cut(s) 136, 216, 268, 1230
BstEII GGTNACC 2 cut(s) 1040, 1252
BstF5I GGATG 5 cut(s) 1300, 1312, 1554, 1909, 2095
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 7 cut(s) 7, 26, 488, 547, 1119, 1458, 1519
BstMCI CGRYCG 3 cut(s) 508, 1998, 2168
BstMWI GCNNNNNNNGC 8 cut(s) 135, 271, 415, 568, 1000, 2408, 2432, 2525
BstNI CCWGG 5 cut(s) 1046, 1148, 1934, 2051, 2297
BstNSI RCATGY 2 cut(s) 820, 2398
BstPAI GACNNNNGTC 1 cut(s) 1791
BstPI GGTNACC 2 cut(s) 1040, 1252
BstSFI CTRYAG 2 cut(s) 1730, 1772
BstSLI GKGCMC 5 cut(s) 601, 608, 951, 1765, 2547
BstV2I GAAGAC 1 cut(s) 2387
BstX2I RGATCY 7 cut(s) 243, 1033, 1080, 1463, 1618, 1936, 2269
BstXI CCANNNNNNTGG 2 cut(s) 1268, 2032
BstYI RGATCY 7 cut(s) 243, 1033, 1080, 1463, 1618, 1936, 2269
BstZI CGGCCG 2 cut(s) 505, 1995
Bsu15I ATCGAT 1 cut(s) 1827
BsuTUI ATCGAT 1 cut(s) 1827
BtgI CCRYGG 4 cut(s) 136, 216, 268, 1230
BtgZI GCGATG 2 cut(s) 1574, 1986
BtsCI GGATG 5 cut(s) 1300, 1312, 1554, 1909, 2095
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 923, 1138
CciNI GCGGCCGC 1 cut(s) 1995
CfoI GCGC 7 cut(s) 7, 26, 488, 547, 1119, 1458, 1519
Cfr10I RCCGGY 1 cut(s) 2473
Cfr42I CCGCGG 2 cut(s) 139, 1233
Cfr9I CCCGGG 1 cut(s) 987
ClaI ATCGAT 1 cut(s) 1827
CseI GACGC 4 cut(s) 72, 133, 740, 1393
Csp6I GTAC 6 cut(s) 261, 1332, 1338, 2480, 2569, 2582
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 7 cut(s) 47, 817, 1000, 1421, 1672, 1682, 2395
CviQI GTAC 6 cut(s) 261, 1332, 1338, 2480, 2569, 2582
DriI GACNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 2 cut(s) 505, 1995
EagI CGGCCG 2 cut(s) 505, 1995
Eam1104I CTCTTC 2 cut(s) 1098, 1355
Eam1105I GACNNNNNGTC 1 cut(s) 529
EarI CTCTTC 2 cut(s) 1098, 1355
EciI GGCGGA 2 cut(s) 1262, 2270
EclXI CGGCCG 2 cut(s) 505, 1995
Eco130I CCWWGG 3 cut(s) 1765, 1789, 2001
Eco147I AGGCCT 1 cut(s) 1883
Eco24I GRGCYC 4 cut(s) 608, 1481, 1765, 2547
Eco31I GGTCTC 4 cut(s) 1021, 1319, 1440, 1517
Eco32I GATATC 1 cut(s) 2556
Eco47I GGWCC 1 cut(s) 1960
Eco52I CGGCCG 2 cut(s) 505, 1995
Eco88I CYCGRG 8 cut(s) 159, 362, 608, 987, 1050, 1437, 1459, 1687
Eco91I GGTNACC 2 cut(s) 1040, 1252
EcoO109I RGGNCCY 4 cut(s) 605, 1762, 2543, 2544
EcoO65I GGTNACC 2 cut(s) 1040, 1252
EcoRII CCWGG 5 cut(s) 1044, 1146, 1932, 2049, 2295
EcoRV GATATC 1 cut(s) 2556
EcoT14I CCWWGG 3 cut(s) 1765, 1789, 2001
EcoT22I ATGCAT 1 cut(s) 2192
EcoT38I GRGCYC 4 cut(s) 608, 1481, 1765, 2547
ErhI CCWWGG 3 cut(s) 1765, 1789, 2001
Esp3I CGTCTC 4 cut(s) 90, 151, 1810, 2588
FaeI CATG 7 cut(s) 50, 820, 1003, 1424, 1675, 1685, 2398
FaqI GGGAC 3 cut(s) 1377, 2237, 2511
FatI CATG 7 cut(s) 46, 816, 999, 1420, 1671, 1681, 2394
FauI CCCGC 6 cut(s) 86, 143, 1209, 1476, 1950, 2209
FauNDI CATATG 2 cut(s) 739, 1563
FbaI TGATCA 1 cut(s) 301
FokI GGATG 5 cut(s) 1307, 1319, 1541, 1916, 2102
FriOI GRGCYC 4 cut(s) 608, 1481, 1765, 2547
FspBI CTAG 5 cut(s) 27, 936, 978, 1842, 2427
GlaI GCGC 7 cut(s) 6, 25, 487, 546, 1118, 1457, 1518
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 656, 923
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 9 cut(s) 197, 602, 614, 698, 988, 1726, 2281, 2467, 2474
HgaI GACGC 4 cut(s) 72, 133, 740, 1393
HhaI GCGC 7 cut(s) 7, 26, 488, 547, 1119, 1458, 1519
Hin1I GRCGYC 3 cut(s) 144, 732, 1404
Hin1II CATG 7 cut(s) 50, 820, 1003, 1424, 1675, 1685, 2398
Hin6I GCGC 7 cut(s) 5, 24, 486, 545, 1117, 1456, 1517
HinP1I GCGC 7 cut(s) 5, 24, 486, 545, 1117, 1456, 1517
HincII GTYRAC 3 cut(s) 751, 814, 2077
HindII GTYRAC 3 cut(s) 751, 814, 2077
HinfI GANTC 9 cut(s) 179, 253, 584, 785, 1205, 1311, 2059, 2133, 2161
HpaII CCGG 9 cut(s) 197, 602, 614, 698, 988, 1726, 2281, 2467, 2474
Hpy166II GTNNAC 7 cut(s) 599, 751, 808, 814, 958, 1669, 2077
Hpy188I TCNGA 6 cut(s) 151, 1060, 1284, 1316, 1324, 2323
Hpy8I GTNNAC 7 cut(s) 599, 751, 808, 814, 958, 1669, 2077
Hpy99I CGWCG 3 cut(s) 734, 1091, 1409
HpyAV CCTTC 8 cut(s) 95, 670, 922, 1826, 1894, 1961, 2090, 2134
HpyCH4III ACNGT 9 cut(s) 122, 962, 1069, 1162, 1183, 1288, 1586, 2351, 2386
HpyCH4IV ACGT 1 cut(s) 810
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 271, 415, 568, 1000, 2408, 2432, 2525
HpySE526I ACGT 1 cut(s) 810
Hsp92I GRCGYC 3 cut(s) 144, 732, 1404
Hsp92II CATG 7 cut(s) 50, 820, 1003, 1424, 1675, 1685, 2398
HspAI GCGC 7 cut(s) 5, 24, 486, 545, 1117, 1456, 1517
Kpn2I TCCGGA 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 301
KspI CCGCGG 2 cut(s) 139, 1233
LweI GCATC 3 cut(s) 883, 973, 1894
MaeI CTAG 5 cut(s) 27, 936, 978, 1842, 2427
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 4 cut(s) 357, 835, 1040, 1252
MbiI CCGCTC 2 cut(s) 640, 2439
MboII GAAGA 7 cut(s) 1090, 1115, 1372, 1628, 1857, 2314, 2392
MflI RGATCY 7 cut(s) 243, 1033, 1080, 1463, 1618, 1936, 2269
MhlI GDGCHC 9 cut(s) 601, 608, 951, 967, 1144, 1481, 1765, 1867, 2547
MluCI AATT 6 cut(s) 368, 490, 622, 1197, 1675, 1853
MlyI GAGTC 3 cut(s) 1320, 2127, 2155
MmeI TCCRAC 2 cut(s) 1302, 1962
Mph1103I ATGCAT 1 cut(s) 2192
MroI TCCGGA 1 cut(s) 697
MroXI GAANNNNTTC 2 cut(s) 37, 2190
MseI TTAA 1 cut(s) 2343
MspA1I CMGCKG 6 cut(s) 138, 307, 1174, 1232, 1957, 2204
MspI CCGG 9 cut(s) 197, 602, 614, 698, 988, 1726, 2281, 2467, 2474
Mva1269I GAATGC 4 cut(s) 1750, 1808, 2190, 2192
MvaI CCWGG 5 cut(s) 1046, 1148, 1934, 2051, 2297
MwoI GCNNNNNNNGC 8 cut(s) 135, 271, 415, 568, 1000, 2408, 2432, 2525
NciI CCSGG 6 cut(s) 198, 603, 988, 989, 1726, 2468
NdeI CATATG 2 cut(s) 739, 1563
NlaIII CATG 7 cut(s) 50, 820, 1003, 1424, 1675, 1685, 2398
NmeAIII GCCGAG 4 cut(s) 533, 967, 998, 2236
NmuCI GTSAC 3 cut(s) 835, 1040, 1252
NotI GCGGCCGC 1 cut(s) 1995
NsiI ATGCAT 1 cut(s) 2192
NspI RCATGY 2 cut(s) 820, 2398
PaeR7I CTCGAG 1 cut(s) 1459
PceI AGGCCT 1 cut(s) 1883
PcsI WCGNNNNNNNCGW 3 cut(s) 794, 966, 1466
PctI GAATGC 4 cut(s) 1750, 1808, 2190, 2192
PdmI GAANNNNTTC 2 cut(s) 37, 2190
PfeI GAWTC 6 cut(s) 179, 253, 584, 785, 1205, 2059
Pfl23II CGTACG 2 cut(s) 260, 1337
PflFI GACNNNGTC 1 cut(s) 2164
PfoI TCCNGGA 2 cut(s) 2295, 2466
PleI GAGTC 3 cut(s) 1319, 2127, 2155
PpsI GAGTC 3 cut(s) 1319, 2127, 2155
PshAI GACNNNNGTC 1 cut(s) 1791
Psp6I CCWGG 5 cut(s) 1044, 1146, 1932, 2049, 2295
PspEI GGTNACC 2 cut(s) 1040, 1252
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 5 cut(s) 1044, 1146, 1932, 2049, 2295
PspLI CGTACG 2 cut(s) 260, 1337
PspOMI GGGCCC 3 cut(s) 604, 1761, 2543
PsrI GAACNNNNNNTAC 2 cut(s) 1661, 1693
PsuI RGATCY 7 cut(s) 243, 1033, 1080, 1463, 1618, 1936, 2269
PsyI GACNNNGTC 1 cut(s) 2164
PvuII CAGCTG 2 cut(s) 307, 1174
RsaI GTAC 6 cut(s) 262, 1333, 1339, 2481, 2570, 2583
RsaNI GTAC 6 cut(s) 261, 1332, 1338, 2480, 2569, 2582
SacII CCGCGG 2 cut(s) 139, 1233
SaqAI TTAA 1 cut(s) 2343
ScaI AGTACT 1 cut(s) 2583
SchI GAGTC 3 cut(s) 1320, 2127, 2155
SduI GDGCHC 9 cut(s) 601, 608, 951, 967, 1144, 1481, 1765, 1867, 2547
SfaNI GCATC 3 cut(s) 883, 973, 1894
SfcI CTRYAG 2 cut(s) 1730, 1772
Sfr274I CTCGAG 1 cut(s) 1459
Sfr303I CCGCGG 2 cut(s) 139, 1233
SgrBI CCGCGG 2 cut(s) 139, 1233
SinI GGWCC 1 cut(s) 1960
SlaI CTCGAG 1 cut(s) 1459
SmaI CCCGGG 1 cut(s) 989
SmlI CTYRAG 1 cut(s) 1459
SmoI CTYRAG 1 cut(s) 1459
Sse9I AATT 6 cut(s) 368, 490, 622, 1197, 1675, 1853
SseBI AGGCCT 1 cut(s) 1883
SspMI CTAG 5 cut(s) 27, 936, 978, 1842, 2427
StuI AGGCCT 1 cut(s) 1883
StyI CCWWGG 3 cut(s) 1765, 1789, 2001
TaaI ACNGT 9 cut(s) 122, 962, 1069, 1162, 1183, 1288, 1586, 2351, 2386
TaiI ACGT 1 cut(s) 813
TaqI TCGA 9 cut(s) 867, 1089, 1290, 1413, 1460, 1827, 2094, 2168, 2339
TaqII GACCGA 1 cut(s) 2154
TasI AATT 6 cut(s) 368, 490, 622, 1197, 1675, 1853
TatI WGTACW 1 cut(s) 2581
TauI GCSGC 5 cut(s) 507, 1890, 1997, 2000, 2435
TfiI GAWTC 6 cut(s) 179, 253, 584, 785, 1205, 2059
Tru1I TTAA 1 cut(s) 2343
Tru9I TTAA 1 cut(s) 2343
TscAI CASTG 3 cut(s) 25, 923, 1138
TseFI GTSAC 3 cut(s) 835, 1040, 1252
Tsp45I GTSAC 3 cut(s) 835, 1040, 1252
TspDTI ATGAA 5 cut(s) 1209, 1370, 1688, 1845, 2321
TspGWI ACGGA 2 cut(s) 1075, 1905
TspMI CCCGGG 1 cut(s) 987
TspRI CASTG 3 cut(s) 25, 923, 1138
Tth111I GACNNNGTC 1 cut(s) 2164
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 1960
XapI RAATTY 2 cut(s) 490, 622
XceI RCATGY 2 cut(s) 820, 2398
XcmI CCANNNNNNNNNTGG 2 cut(s) 1561, 2032
XhoI CTCGAG 1 cut(s) 1459
XmaI CCCGGG 1 cut(s) 987
XmnI GAANNNNTTC 2 cut(s) 37, 2190
XspI CTAG 5 cut(s) 27, 936, 978, 1842, 2427
ZrmI AGTACT 1 cut(s) 2583
Zsp2I ATGCAT 1 cut(s) 2192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.