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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 186 |
| AciI | CCGC | 2 cut(s) | 30, 280 |
| AclWI | GGATC | 3 cut(s) | 241, 309, 322 |
| AfaI | GTAC | 2 cut(s) | 27, 372 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 15, 324, 399 |
| AgsI | TTSAA | 1 cut(s) | 410 |
| AluBI | AGCT | 2 cut(s) | 297, 339 |
| AluI | AGCT | 2 cut(s) | 297, 339 |
| Alw26I | GTCTC | 2 cut(s) | 80, 211 |
| AlwI | GGATC | 3 cut(s) | 241, 309, 322 |
| Ama87I | CYCGRG | 5 cut(s) | 8, 77, 129, 340, 397 |
| ApeKI | GCWGC | 1 cut(s) | 294 |
| AspS9I | GGNCC | 2 cut(s) | 5, 366 |
| AsuC2I | CCSGG | 1 cut(s) | 89 |
| AvaI | CYCGRG | 5 cut(s) | 8, 77, 129, 340, 397 |
| AvaII | GGWCC | 2 cut(s) | 5, 366 |
| BamHI | GGATCC | 1 cut(s) | 314 |
| BauI | CACGAG | 2 cut(s) | 237, 298 |
| BbvI | GCAGC | 1 cut(s) | 306 |
| BccI | CCATC | 3 cut(s) | 31, 131, 291 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BciVI | GTATCC | 1 cut(s) | 12 |
| BcnI | CCSGG | 1 cut(s) | 89 |
| BcoDI | GTCTC | 2 cut(s) | 80, 211 |
| BfuI | GTATCC | 1 cut(s) | 12 |
| BglII | AGATCT | 1 cut(s) | 155 |
| BisI | GCNGC | 1 cut(s) | 295 |
| BlsI | GCNGC | 1 cut(s) | 296 |
| Bme1390I | CCNGG | 1 cut(s) | 89 |
| Bme18I | GGWCC | 2 cut(s) | 5, 366 |
| BmeT110I | CYCGRG | 5 cut(s) | 8, 77, 129, 340, 397 |
| BmgT120I | GGNCC | 2 cut(s) | 5, 366 |
| BmiI | GGNNCC | 3 cut(s) | 6, 7, 316 |
| BmrFI | CCNGG | 1 cut(s) | 89 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 48, 80 |
| BpuEI | CTTGAG | 1 cut(s) | 136 |
| BpuMI | CCSGG | 1 cut(s) | 89 |
| BsaBI | GATNNNNATC | 1 cut(s) | 232 |
| BsaI | GGTCTC | 1 cut(s) | 211 |
| BsaJI | CCNNGG | 5 cut(s) | 87, 310, 323, 398, 449 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 15, 324, 399 |
| Bse118I | RCCGGY | 2 cut(s) | 266, 419 |
| Bse3DI | GCAATG | 1 cut(s) | 441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 232 |
| BseDI | CCNNGG | 5 cut(s) | 87, 310, 323, 398, 449 |
| BseGI | GGATG | 2 cut(s) | 100, 469 |
| BseJI | GATNNNNATC | 1 cut(s) | 232 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 15, 324, 399 |
| BseMI | GCAATG | 1 cut(s) | 441 |
| BseRI | GAGGAG | 1 cut(s) | 371 |
| BseXI | GCAGC | 1 cut(s) | 306 |
| Bsh1236I | CGCG | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 5 cut(s) | 8, 77, 129, 340, 397 |
| BsiSI | CCGG | 4 cut(s) | 89, 267, 420, 440 |
| BslFI | GGGAC | 2 cut(s) | 18, 69 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 15, 324, 399 |
| BsmAI | GTCTC | 2 cut(s) | 80, 211 |
| BsmBI | CGTCTC | 1 cut(s) | 80 |
| BsmFI | GGGAC | 2 cut(s) | 18, 69 |
| BsmI | GAATGC | 1 cut(s) | 311 |
| Bso31I | GGTCTC | 1 cut(s) | 211 |
| BsoBI | CYCGRG | 5 cut(s) | 8, 77, 129, 340, 397 |
| Bsp143I | GATC | 4 cut(s) | 155, 233, 289, 314 |
| Bsp68I | TCGCGA | 1 cut(s) | 186 |
| BspACI | CCGC | 2 cut(s) | 30, 280 |
| BspFNI | CGCG | 1 cut(s) | 186 |
| BspHI | TCATGA | 1 cut(s) | 286 |
| BspLI | GGNNCC | 3 cut(s) | 6, 7, 316 |
| BspPI | GGATC | 3 cut(s) | 241, 309, 322 |
| BspTNI | GGTCTC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 1 cut(s) | 441 |
| BsrFI | RCCGGY | 2 cut(s) | 266, 419 |
| BssAI | RCCGGY | 2 cut(s) | 266, 419 |
| BssECI | CCNNGG | 5 cut(s) | 87, 310, 323, 398, 449 |
| BssMI | GATC | 4 cut(s) | 155, 233, 289, 314 |
| BssSI | CACGAG | 2 cut(s) | 237, 298 |
| BssT1I | CCWWGG | 1 cut(s) | 323 |
| Bst2BI | CACGAG | 2 cut(s) | 237, 298 |
| Bst4CI | ACNGT | 1 cut(s) | 370 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 2 cut(s) | 148, 421 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 397 |
| BstF5I | GGATG | 2 cut(s) | 100, 469 |
| BstFNI | CGCG | 1 cut(s) | 186 |
| BstKTI | GATC | 4 cut(s) | 158, 236, 292, 317 |
| BstMAI | GTCTC | 2 cut(s) | 80, 211 |
| BstMBI | GATC | 4 cut(s) | 155, 233, 289, 314 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 221 |
| BstSCI | CCNGG | 1 cut(s) | 87 |
| BstUI | CGCG | 1 cut(s) | 186 |
| BstV1I | GCAGC | 1 cut(s) | 306 |
| BstX2I | RGATCY | 2 cut(s) | 155, 314 |
| BstYI | RGATCY | 2 cut(s) | 155, 314 |
| BsuI | GTATCC | 1 cut(s) | 12 |
| BtsCI | GGATG | 2 cut(s) | 100, 469 |
| BtuMI | TCGCGA | 1 cut(s) | 186 |
| Cac8I | GCNNGC | 2 cut(s) | 148, 421 |
| CciI | TCATGA | 1 cut(s) | 286 |
| Cfr10I | RCCGGY | 2 cut(s) | 266, 419 |
| Cfr13I | GGNCC | 2 cut(s) | 5, 366 |
| Csp6I | GTAC | 2 cut(s) | 26, 371 |
| CviAII | CATG | 1 cut(s) | 287 |
| CviJI | RGCY | 5 cut(s) | 61, 128, 171, 297, 339 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 128, 171, 297, 339 |
| CviQI | GTAC | 2 cut(s) | 26, 371 |
| DpnI | GATC | 4 cut(s) | 157, 235, 291, 316 |
| DpnII | GATC | 4 cut(s) | 155, 233, 289, 314 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 12 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 323 |
| Eco31I | GGTCTC | 1 cut(s) | 211 |
| Eco47I | GGWCC | 2 cut(s) | 5, 366 |
| Eco88I | CYCGRG | 5 cut(s) | 8, 77, 129, 340, 397 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 397 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 1 cut(s) | 323 |
| ErhI | CCWWGG | 1 cut(s) | 323 |
| Esp3I | CGTCTC | 1 cut(s) | 80 |
| FaeI | CATG | 1 cut(s) | 290 |
| FaiI | YATR | 4 cut(s) | 161, 258, 260, 288 |
| FaqI | GGGAC | 2 cut(s) | 18, 69 |
| FatI | CATG | 1 cut(s) | 286 |
| FauI | CCCGC | 1 cut(s) | 37 |
| FauNDI | CATATG | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 1 cut(s) | 295 |
| FokI | GGATG | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 1 cut(s) | 295 |
| GluI | GCNGC | 1 cut(s) | 295 |
| HapII | CCGG | 4 cut(s) | 89, 267, 420, 440 |
| Hin1II | CATG | 1 cut(s) | 290 |
| HinfI | GANTC | 1 cut(s) | 82 |
| HpaII | CCGG | 4 cut(s) | 89, 267, 420, 440 |
| Hpy188I | TCNGA | 1 cut(s) | 18 |
| Hpy188III | TCNNGA | 9 cut(s) | 50, 77, 79, 153, 185, 237, 287, 333, 342 |
| HpyAV | CCTTC | 4 cut(s) | 80, 118, 421, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 370 |
| HpyCH4V | TGCA | 2 cut(s) | 256, 378 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 221 |
| Hsp92II | CATG | 1 cut(s) | 290 |
| KflI | GGGWCCC | 1 cut(s) | 5 |
| KroI | GCCGGC | 1 cut(s) | 419 |
| KroNI | GCCGGC | 1 cut(s) | 421 |
| Kzo9I | GATC | 4 cut(s) | 155, 233, 289, 314 |
| LmnI | GCTCC | 1 cut(s) | 442 |
| LpnPI | CCDG | 6 cut(s) | 36, 102, 280, 349, 433, 453 |
| Lsp1109I | GCAGC | 1 cut(s) | 306 |
| MalI | GATC | 4 cut(s) | 157, 235, 291, 316 |
| MboI | GATC | 4 cut(s) | 155, 233, 289, 314 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MflI | RGATCY | 2 cut(s) | 155, 314 |
| MluCI | AATT | 1 cut(s) | 386 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MroNI | GCCGGC | 1 cut(s) | 419 |
| MspI | CCGG | 4 cut(s) | 89, 267, 420, 440 |
| MspR9I | CCNGG | 1 cut(s) | 89 |
| Mva1269I | GAATGC | 1 cut(s) | 311 |
| MvnI | CGCG | 1 cut(s) | 186 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 221 |
| NaeI | GCCGGC | 1 cut(s) | 421 |
| NciI | CCSGG | 1 cut(s) | 89 |
| NdeI | CATATG | 1 cut(s) | 258 |
| NdeII | GATC | 4 cut(s) | 155, 233, 289, 314 |
| NgoMIV | GCCGGC | 1 cut(s) | 419 |
| NlaIII | CATG | 1 cut(s) | 290 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 7, 316 |
| NmeAIII | GCCGAG | 1 cut(s) | 335 |
| NruI | TCGCGA | 1 cut(s) | 186 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 1 cut(s) | 286 |
| PctI | GAATGC | 1 cut(s) | 311 |
| PdiI | GCCGGC | 1 cut(s) | 421 |
| PkrI | GCNGC | 1 cut(s) | 296 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| PpuMI | RGGWCCY | 1 cut(s) | 5 |
| Psp5II | RGGWCCY | 1 cut(s) | 5 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 7, 316 |
| PspPI | GGNCC | 2 cut(s) | 5, 366 |
| PspPPI | RGGWCCY | 1 cut(s) | 5 |
| PsuI | RGATCY | 2 cut(s) | 155, 314 |
| RruI | TCGCGA | 1 cut(s) | 186 |
| RsaI | GTAC | 2 cut(s) | 27, 372 |
| RsaNI | GTAC | 2 cut(s) | 26, 371 |
| SatI | GCNGC | 1 cut(s) | 295 |
| Sau3AI | GATC | 4 cut(s) | 155, 233, 289, 314 |
| Sau96I | GGNCC | 2 cut(s) | 5, 366 |
| SchI | GAGTC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 1 cut(s) | 89 |
| SetI | ASST | 8 cut(s) | 25, 121, 181, 195, 299, 341, 351, 395 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SinI | GGWCC | 2 cut(s) | 5, 366 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmlI | CTYRAG | 2 cut(s) | 77, 151 |
| SmoI | CTYRAG | 2 cut(s) | 77, 151 |
| Sse9I | AATT | 1 cut(s) | 386 |
| SsiI | CCGC | 2 cut(s) | 30, 280 |
| StyD4I | CCNGG | 1 cut(s) | 87 |
| StyI | CCWWGG | 1 cut(s) | 323 |
| TaaI | ACNGT | 1 cut(s) | 370 |
| TaqI | TCGA | 4 cut(s) | 78, 105, 175, 332 |
| TasI | AATT | 1 cut(s) | 386 |
| TseI | GCWGC | 1 cut(s) | 294 |
| TspGWI | ACGGA | 1 cut(s) | 404 |
| VpaK11BI | GGWCC | 2 cut(s) | 5, 366 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 397 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 256 |
| XhoI | CTCGAG | 1 cut(s) | 77 |