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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 146 |
| AccIII | TCCGGA | 1 cut(s) | 319 |
| AclWI | GGATC | 3 cut(s) | 14, 316, 414 |
| AcoI | YGGCCR | 1 cut(s) | 397 |
| AcyI | GRCGYC | 1 cut(s) | 147 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 48, 217, 281 |
| AluBI | AGCT | 4 cut(s) | 119, 195, 234, 270 |
| AluI | AGCT | 4 cut(s) | 119, 195, 234, 270 |
| Alw26I | GTCTC | 1 cut(s) | 129 |
| AlwI | GGATC | 3 cut(s) | 14, 316, 414 |
| Ama87I | CYCGRG | 2 cut(s) | 42, 69 |
| Aor13HI | TCCGGA | 1 cut(s) | 319 |
| AoxI | GGCC | 3 cut(s) | 39, 367, 397 |
| ApeKI | GCWGC | 2 cut(s) | 129, 553 |
| AspA2I | CCTAGG | 1 cut(s) | 479 |
| AspLEI | GCGC | 1 cut(s) | 149 |
| AspS9I | GGNCC | 3 cut(s) | 40, 367, 476 |
| AsuHPI | GGTGA | 1 cut(s) | 617 |
| AvaI | CYCGRG | 2 cut(s) | 42, 69 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| AvrII | CCTAGG | 1 cut(s) | 479 |
| BanI | GGYRCC | 1 cut(s) | 146 |
| BanII | GRGCYC | 2 cut(s) | 70, 574 |
| BauI | CACGAG | 2 cut(s) | 538, 573 |
| BbvI | GCAGC | 2 cut(s) | 116, 540 |
| BccI | CCATC | 5 cut(s) | 31, 180, 282, 357, 381 |
| BceAI | ACGGC | 1 cut(s) | 436 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 363, 397, 488, 522 |
| BcoDI | GTCTC | 1 cut(s) | 129 |
| BfaI | CTAG | 2 cut(s) | 281, 480 |
| BfoI | RGCGCY | 1 cut(s) | 150 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 530 |
| BisI | GCNGC | 4 cut(s) | 22, 130, 397, 554 |
| BlnI | CCTAGG | 1 cut(s) | 479 |
| BlsI | GCNGC | 4 cut(s) | 23, 131, 398, 555 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmeT110I | CYCGRG | 2 cut(s) | 42, 69 |
| BmgT120I | GGNCC | 3 cut(s) | 40, 367, 476 |
| BmiI | GGNNCC | 2 cut(s) | 148, 368 |
| BmsI | GCATC | 2 cut(s) | 540, 571 |
| BsaBI | GATNNNNATC | 1 cut(s) | 313 |
| BsaHI | GRCGYC | 1 cut(s) | 147 |
| BsaJI | CCNNGG | 6 cut(s) | 43, 133, 240, 275, 479, 585 |
| BsaWI | WCCGGW | 1 cut(s) | 319 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 488, 502, 518, 532 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 48, 217, 281 |
| Bse118I | RCCGGY | 3 cut(s) | 399, 529, 556 |
| Bse3DI | GCAATG | 1 cut(s) | 31 |
| Bse8I | GATNNNNATC | 1 cut(s) | 313 |
| BseAI | TCCGGA | 1 cut(s) | 319 |
| BseDI | CCNNGG | 6 cut(s) | 43, 133, 240, 275, 479, 585 |
| BseGI | GGATG | 5 cut(s) | 42, 88, 293, 368, 555 |
| BseJI | GATNNNNATC | 1 cut(s) | 313 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 48, 217, 281 |
| BseMI | GCAATG | 1 cut(s) | 31 |
| BseX3I | CGGCCG | 1 cut(s) | 397 |
| BseXI | GCAGC | 2 cut(s) | 116, 540 |
| Bsh1285I | CGRYCG | 1 cut(s) | 400 |
| BshFI | GGCC | 3 cut(s) | 41, 369, 399 |
| BshNI | GGYRCC | 1 cut(s) | 146 |
| BsiEI | CGRYCG | 1 cut(s) | 400 |
| BsiHKCI | CYCGRG | 2 cut(s) | 42, 69 |
| BsiSI | CCGG | 4 cut(s) | 320, 400, 530, 557 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 48, 217, 281 |
| BsmAI | GTCTC | 1 cut(s) | 129 |
| BsmBI | CGTCTC | 1 cut(s) | 129 |
| BsmI | GAATGC | 1 cut(s) | 249 |
| BsnI | GGCC | 3 cut(s) | 41, 369, 399 |
| BsoBI | CYCGRG | 2 cut(s) | 42, 69 |
| Bsp1286I | GDGCHC | 2 cut(s) | 70, 574 |
| Bsp13I | TCCGGA | 1 cut(s) | 319 |
| Bsp143I | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| BspANI | GGCC | 3 cut(s) | 41, 369, 399 |
| BspEI | TCCGGA | 1 cut(s) | 319 |
| BspLI | GGNNCC | 2 cut(s) | 148, 368 |
| BspPI | GGATC | 3 cut(s) | 14, 316, 414 |
| BspT107I | GGYRCC | 1 cut(s) | 146 |
| BsrDI | GCAATG | 1 cut(s) | 31 |
| BsrFI | RCCGGY | 3 cut(s) | 399, 529, 556 |
| BssAI | RCCGGY | 3 cut(s) | 399, 529, 556 |
| BssECI | CCNNGG | 6 cut(s) | 43, 133, 240, 275, 479, 585 |
| BssMI | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| BssNI | GRCGYC | 1 cut(s) | 147 |
| BssSI | CACGAG | 2 cut(s) | 538, 573 |
| BssT1I | CCWWGG | 4 cut(s) | 133, 240, 275, 479 |
| Bst2BI | CACGAG | 2 cut(s) | 538, 573 |
| Bst4CI | ACNGT | 2 cut(s) | 220, 326 |
| Bst6I | CTCTTC | 1 cut(s) | 81 |
| BstACI | GRCGYC | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 6 cut(s) | 257, 272, 459, 531, 558, 562 |
| BstF5I | GGATG | 5 cut(s) | 42, 88, 293, 368, 555 |
| BstH2I | RGCGCY | 1 cut(s) | 150 |
| BstHHI | GCGC | 1 cut(s) | 149 |
| BstKTI | GATC | 5 cut(s) | 9, 311, 409, 445, 537 |
| BstMAI | GTCTC | 1 cut(s) | 129 |
| BstMBI | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| BstMCI | CGRYCG | 1 cut(s) | 400 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 291, 300, 530, 550 |
| BstNSI | RCATGY | 1 cut(s) | 517 |
| BstV1I | GCAGC | 2 cut(s) | 116, 540 |
| BstX2I | RGATCY | 2 cut(s) | 6, 308 |
| BstYI | RGATCY | 2 cut(s) | 6, 308 |
| BstZI | CGGCCG | 1 cut(s) | 397 |
| BsuRI | GGCC | 3 cut(s) | 41, 369, 399 |
| BtsCI | GGATG | 5 cut(s) | 42, 88, 293, 368, 555 |
| Cac8I | GCNNGC | 6 cut(s) | 257, 272, 459, 531, 558, 562 |
| CfoI | GCGC | 1 cut(s) | 149 |
| Cfr10I | RCCGGY | 3 cut(s) | 399, 529, 556 |
| Cfr13I | GGNCC | 3 cut(s) | 40, 367, 476 |
| CviAII | CATG | 1 cut(s) | 514 |
| DinI | GGCGCC | 1 cut(s) | 148 |
| DpnI | GATC | 5 cut(s) | 8, 310, 408, 444, 536 |
| DpnII | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| EaeI | YGGCCR | 1 cut(s) | 397 |
| EagI | CGGCCG | 1 cut(s) | 397 |
| Eam1104I | CTCTTC | 1 cut(s) | 81 |
| EarI | CTCTTC | 1 cut(s) | 81 |
| EciI | GGCGGA | 3 cut(s) | 46, 300, 559 |
| EclXI | CGGCCG | 1 cut(s) | 397 |
| Eco130I | CCWWGG | 4 cut(s) | 133, 240, 275, 479 |
| Eco24I | GRGCYC | 2 cut(s) | 70, 574 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco52I | CGGCCG | 1 cut(s) | 397 |
| Eco88I | CYCGRG | 2 cut(s) | 42, 69 |
| EcoO109I | RGGNCCY | 2 cut(s) | 367, 476 |
| EcoT14I | CCWWGG | 4 cut(s) | 133, 240, 275, 479 |
| EcoT38I | GRGCYC | 2 cut(s) | 70, 574 |
| EgeI | GGCGCC | 1 cut(s) | 148 |
| EheI | GGCGCC | 1 cut(s) | 148 |
| ErhI | CCWWGG | 4 cut(s) | 133, 240, 275, 479 |
| Esp3I | CGTCTC | 1 cut(s) | 129 |
| FaeI | CATG | 1 cut(s) | 517 |
| FaiI | YATR | 3 cut(s) | 223, 494, 515 |
| FatI | CATG | 1 cut(s) | 513 |
| FauI | CCCGC | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 4 cut(s) | 22, 130, 397, 554 |
| FokI | GGATG | 5 cut(s) | 49, 95, 300, 375, 562 |
| FriOI | GRGCYC | 2 cut(s) | 70, 574 |
| Fsp4HI | GCNGC | 4 cut(s) | 22, 130, 397, 554 |
| FspBI | CTAG | 2 cut(s) | 281, 480 |
| GlaI | GCGC | 1 cut(s) | 148 |
| GluI | GCNGC | 4 cut(s) | 22, 130, 397, 554 |
| HaeII | RGCGCY | 1 cut(s) | 150 |
| HaeIII | GGCC | 3 cut(s) | 41, 369, 399 |
| HapII | CCGG | 4 cut(s) | 320, 400, 530, 557 |
| HhaI | GCGC | 1 cut(s) | 149 |
| Hin1I | GRCGYC | 1 cut(s) | 147 |
| Hin1II | CATG | 1 cut(s) | 517 |
| Hin6I | GCGC | 1 cut(s) | 147 |
| HinP1I | GCGC | 1 cut(s) | 147 |
| HincII | GTYRAC | 1 cut(s) | 208 |
| HindII | GTYRAC | 1 cut(s) | 208 |
| HpaI | GTTAAC | 1 cut(s) | 208 |
| HpaII | CCGG | 4 cut(s) | 320, 400, 530, 557 |
| HphI | GGTGA | 1 cut(s) | 617 |
| Hpy166II | GTNNAC | 2 cut(s) | 208, 329 |
| Hpy188I | TCNGA | 2 cut(s) | 199, 510 |
| Hpy188III | TCNNGA | 3 cut(s) | 320, 384, 538 |
| Hpy8I | GTNNAC | 2 cut(s) | 208, 329 |
| HpyAV | CCTTC | 2 cut(s) | 194, 365 |
| HpyCH4III | ACNGT | 2 cut(s) | 220, 326 |
| HpyCH4V | TGCA | 3 cut(s) | 249, 374, 601 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 291, 300, 530, 550 |
| Hsp92I | GRCGYC | 1 cut(s) | 147 |
| Hsp92II | CATG | 1 cut(s) | 517 |
| HspAI | GCGC | 1 cut(s) | 147 |
| KasI | GGCGCC | 1 cut(s) | 146 |
| Kpn2I | TCCGGA | 1 cut(s) | 319 |
| KroI | GCCGGC | 2 cut(s) | 529, 556 |
| KroNI | GCCGGC | 2 cut(s) | 531, 558 |
| KspAI | GTTAAC | 1 cut(s) | 208 |
| Kzo9I | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| LmnI | GCTCC | 3 cut(s) | 116, 496, 510 |
| LpnPI | CCDG | 4 cut(s) | 333, 413, 543, 570 |
| Lsp1109I | GCAGC | 2 cut(s) | 116, 540 |
| LweI | GCATC | 2 cut(s) | 540, 571 |
| MaeI | CTAG | 2 cut(s) | 281, 480 |
| MalI | GATC | 5 cut(s) | 8, 310, 408, 444, 536 |
| MboI | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| MboII | GAAGA | 2 cut(s) | 98, 353 |
| MflI | RGATCY | 2 cut(s) | 6, 308 |
| MhlI | GDGCHC | 2 cut(s) | 70, 574 |
| MluCI | AATT | 2 cut(s) | 379, 432 |
| Mly113I | GGCGCC | 1 cut(s) | 147 |
| MmeI | TCCRAC | 1 cut(s) | 384 |
| MnlI | CCTC | 8 cut(s) | 27, 38, 73, 170, 534, 540, 561, 580 |
| MroI | TCCGGA | 1 cut(s) | 319 |
| MroNI | GCCGGC | 2 cut(s) | 529, 556 |
| MseI | TTAA | 4 cut(s) | 207, 335, 378, 435 |
| MspI | CCGG | 4 cut(s) | 320, 400, 530, 557 |
| Mva1269I | GAATGC | 1 cut(s) | 249 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 291, 300, 530, 550 |
| NaeI | GCCGGC | 2 cut(s) | 531, 558 |
| NarI | GGCGCC | 1 cut(s) | 147 |
| NdeII | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| NgoMIV | GCCGGC | 2 cut(s) | 529, 556 |
| NlaIII | CATG | 1 cut(s) | 517 |
| NlaIV | GGNNCC | 2 cut(s) | 148, 368 |
| NmeAIII | GCCGAG | 1 cut(s) | 610 |
| NspI | RCATGY | 1 cut(s) | 517 |
| PctI | GAATGC | 1 cut(s) | 249 |
| PdiI | GCCGGC | 2 cut(s) | 531, 558 |
| PkrI | GCNGC | 4 cut(s) | 23, 131, 398, 555 |
| PluTI | GGCGCC | 1 cut(s) | 150 |
| PpuMI | RGGWCCY | 1 cut(s) | 476 |
| Psp5II | RGGWCCY | 1 cut(s) | 476 |
| PspN4I | GGNNCC | 2 cut(s) | 148, 368 |
| PspPI | GGNCC | 3 cut(s) | 40, 367, 476 |
| PspPPI | RGGWCCY | 1 cut(s) | 476 |
| PsuI | RGATCY | 2 cut(s) | 6, 308 |
| SaqAI | TTAA | 4 cut(s) | 207, 335, 378, 435 |
| SatI | GCNGC | 4 cut(s) | 22, 130, 397, 554 |
| Sau3AI | GATC | 5 cut(s) | 6, 308, 406, 442, 534 |
| Sau96I | GGNCC | 3 cut(s) | 40, 367, 476 |
| SduI | GDGCHC | 2 cut(s) | 70, 574 |
| SetI | ASST | 7 cut(s) | 49, 121, 197, 236, 272, 478, 607 |
| SfaNI | GCATC | 2 cut(s) | 540, 571 |
| SfoI | GGCGCC | 1 cut(s) | 148 |
| SinI | GGWCC | 1 cut(s) | 476 |
| Sse9I | AATT | 2 cut(s) | 379, 432 |
| SspDI | GGCGCC | 1 cut(s) | 146 |
| SspMI | CTAG | 2 cut(s) | 281, 480 |
| StyI | CCWWGG | 4 cut(s) | 133, 240, 275, 479 |
| TaaI | ACNGT | 2 cut(s) | 220, 326 |
| TaqI | TCGA | 3 cut(s) | 108, 383, 409 |
| TasI | AATT | 2 cut(s) | 379, 432 |
| TauI | GCSGC | 2 cut(s) | 24, 399 |
| Tru1I | TTAA | 4 cut(s) | 207, 335, 378, 435 |
| Tru9I | TTAA | 4 cut(s) | 207, 335, 378, 435 |
| TseI | GCWGC | 2 cut(s) | 129, 553 |
| TspDTI | ATGAA | 2 cut(s) | 99, 360 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XceI | RCATGY | 1 cut(s) | 517 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |
| XmaJI | CCTAGG | 1 cut(s) | 479 |
| XspI | CTAG | 2 cut(s) | 281, 480 |