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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 95 |
| Acc36I | ACCTGC | 2 cut(s) | 310, 403 |
| Acc65I | GGTACC | 1 cut(s) | 419 |
| AccB1I | GGYRCC | 3 cut(s) | 74, 356, 419 |
| AccBSI | CCGCTC | 1 cut(s) | 88 |
| AccII | CGCG | 2 cut(s) | 120, 617 |
| AciI | CCGC | 4 cut(s) | 88, 120, 148, 617 |
| AcoI | YGGCCR | 1 cut(s) | 121 |
| AcuI | CTGAAG | 2 cut(s) | 272, 509 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 61, 429, 448 |
| AjnI | CCWGG | 2 cut(s) | 275, 462 |
| AluBI | AGCT | 5 cut(s) | 100, 331, 349, 487, 592 |
| AluI | AGCT | 5 cut(s) | 100, 331, 349, 487, 592 |
| Alw26I | GTCTC | 2 cut(s) | 216, 569 |
| Ama87I | CYCGRG | 1 cut(s) | 525 |
| AoxI | GGCC | 2 cut(s) | 121, 273 |
| ApeKI | GCWGC | 2 cut(s) | 566, 569 |
| Asp718I | GGTACC | 1 cut(s) | 419 |
| AspLEI | GCGC | 3 cut(s) | 96, 462, 617 |
| AspS9I | GGNCC | 1 cut(s) | 322 |
| AsuC2I | CCSGG | 1 cut(s) | 221 |
| AsuHPI | GGTGA | 3 cut(s) | 209, 280, 524 |
| AvaI | CYCGRG | 1 cut(s) | 525 |
| AvaII | GGWCC | 1 cut(s) | 322 |
| BanI | GGYRCC | 3 cut(s) | 74, 356, 419 |
| BbsI | GAAGAC | 1 cut(s) | 629 |
| BbvCI | CCTCAGC | 1 cut(s) | 228 |
| BbvI | GCAGC | 2 cut(s) | 553, 556 |
| BccI | CCATC | 2 cut(s) | 172, 605 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 23, 57, 149, 183, 506, 540 |
| BciT130I | CCWGG | 2 cut(s) | 277, 464 |
| BcnI | CCSGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 2 cut(s) | 216, 569 |
| BfmI | CTRYAG | 1 cut(s) | 59 |
| BfoI | RGCGCY | 1 cut(s) | 463 |
| BfuAI | ACCTGC | 2 cut(s) | 310, 403 |
| BisI | GCNGC | 4 cut(s) | 121, 567, 570, 618 |
| BlpI | GCTNAGC | 1 cut(s) | 603 |
| BlsI | GCNGC | 4 cut(s) | 122, 568, 571, 619 |
| Bme1390I | CCNGG | 3 cut(s) | 221, 277, 464 |
| Bme18I | GGWCC | 1 cut(s) | 322 |
| BmeT110I | CYCGRG | 1 cut(s) | 525 |
| BmgT120I | GGNCC | 1 cut(s) | 322 |
| BmiI | GGNNCC | 4 cut(s) | 76, 358, 378, 421 |
| BmrFI | CCNGG | 3 cut(s) | 221, 277, 464 |
| BmsI | GCATC | 1 cut(s) | 325 |
| BpiI | GAAGAC | 1 cut(s) | 629 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 361, 393 |
| BpmI | CTGGAG | 2 cut(s) | 206, 489 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 603 |
| BpuEI | CTTGAG | 2 cut(s) | 50, 578 |
| BpuMI | CCSGG | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 1 cut(s) | 276 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 61, 429, 448 |
| Bse1I | ACTGG | 1 cut(s) | 189 |
| BseBI | CCWGG | 2 cut(s) | 277, 464 |
| BseDI | CCNNGG | 1 cut(s) | 276 |
| BseGI | GGATG | 1 cut(s) | 183 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 61, 429, 448 |
| BseMII | CTCAG | 2 cut(s) | 12, 219 |
| BseNI | ACTGG | 1 cut(s) | 189 |
| BseRI | GAGGAG | 3 cut(s) | 152, 221, 278 |
| BseXI | GCAGC | 2 cut(s) | 553, 556 |
| Bsh1236I | CGCG | 2 cut(s) | 120, 617 |
| BshFI | GGCC | 2 cut(s) | 123, 275 |
| BshNI | GGYRCC | 3 cut(s) | 74, 356, 419 |
| BsiHKCI | CYCGRG | 1 cut(s) | 525 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BslFI | GGGAC | 1 cut(s) | 80 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 61, 429, 448 |
| BsmAI | GTCTC | 2 cut(s) | 216, 569 |
| BsmBI | CGTCTC | 1 cut(s) | 569 |
| BsmFI | GGGAC | 1 cut(s) | 80 |
| BsnI | GGCC | 2 cut(s) | 123, 275 |
| BsoBI | CYCGRG | 1 cut(s) | 525 |
| Bsp143I | GATC | 3 cut(s) | 40, 115, 388 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 603 |
| BspACI | CCGC | 4 cut(s) | 88, 120, 148, 617 |
| BspANI | GGCC | 2 cut(s) | 123, 275 |
| BspCNI | CTCAG | 2 cut(s) | 13, 220 |
| BspFNI | CGCG | 2 cut(s) | 120, 617 |
| BspLI | GGNNCC | 4 cut(s) | 76, 358, 378, 421 |
| BspMAI | CTGCAG | 1 cut(s) | 63 |
| BspMI | ACCTGC | 2 cut(s) | 310, 403 |
| BspT107I | GGYRCC | 3 cut(s) | 74, 356, 419 |
| BsrBI | CCGCTC | 1 cut(s) | 88 |
| BsrI | ACTGG | 1 cut(s) | 189 |
| BssECI | CCNNGG | 1 cut(s) | 276 |
| BssMI | GATC | 3 cut(s) | 40, 115, 388 |
| Bst2UI | CCWGG | 2 cut(s) | 277, 464 |
| Bst4CI | ACNGT | 2 cut(s) | 443, 628 |
| BstC8I | GCNNGC | 3 cut(s) | 98, 198, 564 |
| BstDEI | CTNAG | 4 cut(s) | 21, 228, 364, 603 |
| BstF5I | GGATG | 1 cut(s) | 183 |
| BstFNI | CGCG | 2 cut(s) | 120, 617 |
| BstH2I | RGCGCY | 1 cut(s) | 463 |
| BstHHI | GCGC | 3 cut(s) | 96, 462, 617 |
| BstKTI | GATC | 3 cut(s) | 43, 118, 391 |
| BstMAI | GTCTC | 2 cut(s) | 216, 569 |
| BstMBI | GATC | 3 cut(s) | 40, 115, 388 |
| BstNI | CCWGG | 2 cut(s) | 277, 464 |
| BstSCI | CCNGG | 3 cut(s) | 219, 275, 462 |
| BstSFI | CTRYAG | 1 cut(s) | 59 |
| BstUI | CGCG | 2 cut(s) | 120, 617 |
| BstV1I | GCAGC | 2 cut(s) | 553, 556 |
| BstV2I | GAAGAC | 1 cut(s) | 629 |
| BsuRI | GGCC | 2 cut(s) | 123, 275 |
| BtsCI | GGATG | 1 cut(s) | 183 |
| BtsI | GCAGTG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 2 cut(s) | 207, 633 |
| BveI | ACCTGC | 2 cut(s) | 310, 403 |
| Cac8I | GCNNGC | 3 cut(s) | 98, 198, 564 |
| CfoI | GCGC | 3 cut(s) | 96, 462, 617 |
| Cfr13I | GGNCC | 1 cut(s) | 322 |
| CseI | GACGC | 1 cut(s) | 586 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DdeI | CTNAG | 4 cut(s) | 21, 228, 364, 603 |
| DpnI | GATC | 3 cut(s) | 42, 117, 390 |
| DpnII | GATC | 3 cut(s) | 40, 115, 388 |
| EaeI | YGGCCR | 1 cut(s) | 121 |
| Eco147I | AGGCCT | 1 cut(s) | 275 |
| Eco47I | GGWCC | 1 cut(s) | 322 |
| Eco57I | CTGAAG | 2 cut(s) | 272, 509 |
| Eco88I | CYCGRG | 1 cut(s) | 525 |
| EcoRII | CCWGG | 2 cut(s) | 275, 462 |
| Esp3I | CGTCTC | 1 cut(s) | 569 |
| FaiI | YATR | 2 cut(s) | 302, 455 |
| FaqI | GGGAC | 1 cut(s) | 80 |
| FauI | CCCGC | 2 cut(s) | 81, 141 |
| Fnu4HI | GCNGC | 4 cut(s) | 121, 567, 570, 618 |
| FokI | GGATG | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 4 cut(s) | 121, 567, 570, 618 |
| FspI | TGCGCA | 1 cut(s) | 95 |
| GlaI | GCGC | 3 cut(s) | 95, 461, 616 |
| GluI | GCNGC | 4 cut(s) | 121, 567, 570, 618 |
| GsuI | CTGGAG | 2 cut(s) | 206, 489 |
| HaeII | RGCGCY | 1 cut(s) | 463 |
| HaeIII | GGCC | 2 cut(s) | 123, 275 |
| HapII | CCGG | 1 cut(s) | 221 |
| HgaI | GACGC | 1 cut(s) | 586 |
| HhaI | GCGC | 3 cut(s) | 96, 462, 617 |
| Hin6I | GCGC | 3 cut(s) | 94, 460, 615 |
| HinP1I | GCGC | 3 cut(s) | 94, 460, 615 |
| HinfI | GANTC | 1 cut(s) | 209 |
| HpaII | CCGG | 1 cut(s) | 221 |
| HphI | GGTGA | 3 cut(s) | 209, 280, 524 |
| Hpy188I | TCNGA | 1 cut(s) | 326 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 250, 284, 386, 595 |
| HpyAV | CCTTC | 7 cut(s) | 25, 168, 247, 265, 496, 547, 592 |
| HpyCH4III | ACNGT | 2 cut(s) | 443, 628 |
| HpyCH4V | TGCA | 3 cut(s) | 61, 200, 304 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 228, 364, 603 |
| HspAI | GCGC | 3 cut(s) | 94, 460, 615 |
| KpnI | GGTACC | 1 cut(s) | 423 |
| Kzo9I | GATC | 3 cut(s) | 40, 115, 388 |
| LmnI | GCTCC | 5 cut(s) | 85, 105, 187, 346, 382 |
| Lsp1109I | GCAGC | 2 cut(s) | 553, 556 |
| LweI | GCATC | 1 cut(s) | 325 |
| MaeIII | GTNAC | 1 cut(s) | 215 |
| MalI | GATC | 3 cut(s) | 42, 117, 390 |
| MbiI | CCGCTC | 1 cut(s) | 88 |
| MboI | GATC | 3 cut(s) | 40, 115, 388 |
| MboII | GAAGA | 1 cut(s) | 634 |
| MluCI | AATT | 3 cut(s) | 35, 153, 435 |
| MlyI | GAGTC | 1 cut(s) | 218 |
| MmeI | TCCRAC | 3 cut(s) | 291, 324, 384 |
| MspI | CCGG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 3 cut(s) | 221, 277, 464 |
| MvaI | CCWGG | 2 cut(s) | 277, 464 |
| MvnI | CGCG | 2 cut(s) | 120, 617 |
| NciI | CCSGG | 1 cut(s) | 221 |
| NdeII | GATC | 3 cut(s) | 40, 115, 388 |
| NlaIV | GGNNCC | 4 cut(s) | 76, 358, 378, 421 |
| NmeAIII | GCCGAG | 2 cut(s) | 103, 598 |
| NmuCI | GTSAC | 1 cut(s) | 215 |
| NsbI | TGCGCA | 1 cut(s) | 95 |
| PaeR7I | CTCGAG | 1 cut(s) | 525 |
| PceI | AGGCCT | 1 cut(s) | 275 |
| PkrI | GCNGC | 4 cut(s) | 122, 568, 571, 619 |
| PleI | GAGTC | 1 cut(s) | 217 |
| PpsI | GAGTC | 1 cut(s) | 217 |
| Psp6I | CCWGG | 2 cut(s) | 275, 462 |
| PspGI | CCWGG | 2 cut(s) | 275, 462 |
| PspN4I | GGNNCC | 4 cut(s) | 76, 358, 378, 421 |
| PspPI | GGNCC | 1 cut(s) | 322 |
| PspXI | VCTCGAGB | 1 cut(s) | 525 |
| PstI | CTGCAG | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SatI | GCNGC | 4 cut(s) | 121, 567, 570, 618 |
| Sau3AI | GATC | 3 cut(s) | 40, 115, 388 |
| Sau96I | GGNCC | 1 cut(s) | 322 |
| SchI | GAGTC | 1 cut(s) | 218 |
| ScrFI | CCNGG | 3 cut(s) | 221, 277, 464 |
| SfaNI | GCATC | 1 cut(s) | 325 |
| SfcI | CTRYAG | 1 cut(s) | 59 |
| Sfr274I | CTCGAG | 1 cut(s) | 525 |
| SinI | GGWCC | 1 cut(s) | 322 |
| SlaI | CTCGAG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 3 cut(s) | 29, 525, 593 |
| SmoI | CTYRAG | 3 cut(s) | 29, 525, 593 |
| Sse9I | AATT | 3 cut(s) | 35, 153, 435 |
| SseBI | AGGCCT | 1 cut(s) | 275 |
| SsiI | CCGC | 4 cut(s) | 88, 120, 148, 617 |
| StuI | AGGCCT | 1 cut(s) | 275 |
| StyD4I | CCNGG | 3 cut(s) | 219, 275, 462 |
| TaaI | ACNGT | 2 cut(s) | 443, 628 |
| TaqI | TCGA | 3 cut(s) | 235, 526, 556 |
| TaqII | GACCGA | 1 cut(s) | 69 |
| TasI | AATT | 3 cut(s) | 35, 153, 435 |
| TauI | GCSGC | 2 cut(s) | 123, 620 |
| TscAI | CASTG | 2 cut(s) | 207, 633 |
| TseFI | GTSAC | 1 cut(s) | 215 |
| TseI | GCWGC | 2 cut(s) | 566, 569 |
| Tsp45I | GTSAC | 1 cut(s) | 215 |
| TspDTI | ATGAA | 2 cut(s) | 17, 470 |
| TspRI | CASTG | 2 cut(s) | 207, 633 |
| VpaK11BI | GGWCC | 1 cut(s) | 322 |
| XhoI | CTCGAG | 1 cut(s) | 525 |